Development of a Surface Plasmon Resonance-Based DNA Sensor and Its Application for Screening DNA-Targeted Anticancer Drugs

REFERENCES

• Agbandje , M. , and R. McKenna . 1992 . Comparative studies of intercalative DNA-drug interactions using molecular modeling and biophysical techniques . In Nucleic Acid Targeted Drug Design , ed. C. L. Propost and T. J. Perun . New York : Marcel Dekker .
   Google Scholar
• Antonini , I. , P. Polucci , T. C. Jenkins , L. R. Kelland , E. Menta , N. Pescalli , B. Stefanska , J. Mazerski , and S. Martelli . 1997 . 1-[(w-Aminoalkyl)amino]-4-[N-(w-aminoalkyl)carbamoyl]-9-oxo-9,10-dihydroacridines as intercalating cytotoxic agents: synthesis, DNA binding and biological evaluation . J. Med. Chem. 40 : 3749 – 3755 .
   PubMed Web of Science ®Google Scholar
• Boozer , C. , G. Kim , S. Cong , H. Guan , and T. Londergan . 2006. Looking towards label-free biomolecular interaction analysis in a high-throughput format: a review of new surface Plasmon resonance technologies. Curr. Opion Biotech. 17: 400–405.
   PubMed Web of Science ®Google Scholar
• Carrara , S. , L. Benini , V. Bhalla , C. Stagni , A. Ferretti , A. Cavallini , B. Ricco , and B. Samori . 2009 . New insights for using self-assembly materials to improve the detection stability in label-free DNA-chip and immuno-sensors . Biosen. Bioelec. 24 : 3425 – 3429 .
   Web of Science ®Google Scholar
• Choi S. H. , J. W. Lee , and S. J. Sim . 2005 . Enhanced performance of a surface plasmon resonance immunosensor for detecting Ab-GAD antibody based on the modified self-assembled monolayers . Biosen. Bioelec. 21 : 378 .
   PubMed Web of Science ®Google Scholar
• Cui , X. , R. Pei , Z. Wang , F. Yang , Y. Ma , S. Dong , and X. Yang . 2003 . Layer-by-layer assembly of multilayer films composed of avidin and biotin-labeled antibody for immunosensing . Biosen. Bioelec. 18 : 59 – 67 .
   PubMed Web of Science ®Google Scholar
• Gambari , R. G. Feriotto , C. Rutigliano , N. Bianchi , and C. Mischiati . 2000 . Biospecific interaction analysis (BIA) of low-molecular weight DNA-binding drugs . J. Pharmacol. Exp. Ther. 294 : 370 – 377 .
   PubMed Web of Science ®Google Scholar
• Feriotto G. , A. Ciucci , C. Mishiati , F. Animati , P. Lombardi , P. Giacomini , and R. Gambari . 1994 . Binding of Epstein-Barr virus nuclear antigen 1 to DNA: Inhibition by distamycin and two novel distamycin analogues . Eur. J. Pharmacol. 267 : 143 – 149 .
   Web of Science ®Google Scholar
• Huber , W. , S. Perspicace , J. Kohler , F. Muller , and D. Schlatter . 2004 . SPR-based interaction studies with small molecular weight ligands using hAGT fusion proteins . Anal. Biochem. 333 : 280 – 288 .
   PubMed Web of Science ®Google Scholar
• Maleev , V. , M. Semenov , E. Kruglova , T. Bolbukh , A. Gasan , E. Bereznyak , and A. Shestopalova . 2003 . Spectroscopic and colorimetric study of DNA interaction with a new series of actinocin derivatives . J. Mol. Struct. 645 : 145 – 158 .
   Web of Science ®Google Scholar
• Mannelli , I. , M. Minunni , S. Tmobelli , R. Wang , M. M. Spiriti , and M. Mascini . 2005 . Direct immobilization of DNA probes for the development of affinity biosensor . Bioelectrochem. 66 : 129 – 138 .
   PubMed Web of Science ®Google Scholar
• Minunni , M. , S. Tmobelli , M. Mascini , A. Bili , M. C. Bergonzib , and F. F. Vincierib . 2005 . An optical DNA-based biosensor for the analysis of bioactive constituents with application in drug and herbal drug screening . Talanta 65 : 578 – 585 .
   Web of Science ®Google Scholar
• Minunni , M. , S. Tmobelli , K. Scielzi , I. Mannelli , M. Mascini , and C. Gaudiano . 2003 . Detection of beta-thalassemia by a DNA piezoelectric biosensor coupled with polymerase chain reaction . Anal. Chim. Acta 481 : 55 – 64 .
   Web of Science ®Google Scholar
• Mischiati , C. , M. Borgatti , N. Bianchi , C. Rutigliano , M. Tomassetti , G. Feriotto , and R. Gambari . 1999 . Interaction of the human NF-κB p52 transcription factor with DNA-PNA hybrids mimicking the NF-κB binding sites of the human immunodeficiency virus type 1 promoter . J. Biol. Chem. 274 : 33114 – 33122 .
   PubMed Web of Science ®Google Scholar
• Nguyen , B. , F. A. Tanious , and W. D. Wilson . 2007 . Biosensor-surface plasmon resonance: quantitative analysis of small molecule-nucleic acid interactions . Methods 42 : 150 – 161 .
   PubMed Web of Science ®Google Scholar
• Odenthal , K. J. , and J. J. Gooding . 2007 . An introduction to electrochemical DNA biosensors . Analyst 132 : 603 – 610 .
   PubMed Web of Science ®Google Scholar
• Peeters , S. , T. Stakenborg , G. Reekmans , W. Laureyn , L. Lagae , A. Van Arschot , and M. Van Ranst . 2008 . Impact of spacers on the hybridization efficiency of mixed self-assembled DNA/alkanrthiol films . Biosen. Bioelec. 24 : 72 – 77 .
   Web of Science ®Google Scholar
• Pisarchick , M. L. , and N. L. Thompson . 1990 . Binding of a monoclonal antibody and its Fab fragment to supported phospholipid monolayers measured by total internal reflection fluorescence microscopy . Biophys. J. 58 : 1235 – 1249 .
   PubMed Web of Science ®Google Scholar
• Pugliese , L. , A. Coda , M. Malcovati , and M. Bologensi . 1993 . Three-dimensional structure of the tetragonal crystal form of egg-white avidin in its functional complex with biotin at 2.7 A° resolution . J. Mol. Bio. 231 : 698 – 710 .
   PubMed Web of Science ®Google Scholar
• Ricci , F. , R. Y. Lai , A. J. Heeger , K. W. Plaxo , and J. J. Sumner . 2007. Effect of molecular crowding on the response of an electrochemical DNA sensor. Langmuir 23: 6827–6834.
   PubMed Web of Science ®Google Scholar
• Sen , A. , A. Ray , and M. Maiti . 1996 . Thermodynamics of the interactions of sanguinarine with DNA: influence of ionic strength and base composition . Biophysical Chem. 59 : 155 – 170 .
   PubMed Web of Science ®Google Scholar
• Shchepinov , M. S. , S. C. Case-Green , and E. M. Southern . 1997 . Steric factors influencing hybridization of nucleic acids to oligonucleotide arrays . Nucleic Acid Res. 25 : 1155 – 1161 .
   PubMed Web of Science ®Google Scholar
• Tombelli , S. , M. Mascini , and A. P. F. Turner . 2002 . Improved procedures for immobilization of oligonucleotides on gold-coated piezoelectrid quartz crystals . Biosens. Bioelectron. 17 : 929 – 936 .
   PubMed Web of Science ®Google Scholar
• Tsai , W. C. , and P. J. R. Pai 2009 . Surface plasmon resonance-based immunosensor with oriented immobilized antibody fragments on a mixed self-assembled monolayer for determining staphylococcal enterotoxin B . Microchimica Acta 166 : 115 – 122 .
   Web of Science ®Google Scholar
• Watterson , J. H. , P. A. E. Piunno , and U. J. Krull . 2002 . Towards the optimization of an optical DNA sensor: control of selectivity coefficients and relative surface affinities . Anal. Chim. Acta 457 : 29 – 38 .
   Web of Science ®Google Scholar
• Watterson , J. H. , P. A. E. Piunno , C. C. Wust , and U. J. Krull . 2001 . Controlling the density of nucleic acid oligomers on fiber optic sensors for enhancement of selectivity and sensitivity . Sens. Actua. B 74 : 27 – 36 .
   Web of Science ®Google Scholar
• Wink , Th. , S. J. Van Zuilen , A. Bult , and W. P. Van Bennekom . 1997 . Self-assembled monolayers for biosensors . Analyst 12 : 43R – 50R .
   Google Scholar
• Yamasaki , R. , M. Ito , B. Lee , H. Jung , H. Y. Lee , and T. Kawai . 2007 . Single probe nucleic acid immobilization on chemically modified single protein by controlling ionic strength and pH . Anal. Chem. Acta 603 : 76 – 81 .
   Web of Science ®Google Scholar
• Yamasaki , R. , J. Kim , H. Jung , H. Y. Lee , and T. Kawai . 2006 . Dependence upon ionic strength in the immobilization of probing oligonucleotides onto streptavidin-modified probe surfaces . Biochem. Eng. J. 29 : 125 – 128 .
   Web of Science ®Google Scholar