Authentication of Dendrobium Officinale from Similar Species with Infrared and Ultraviolet-Visible Spectroscopies with Data Visualization and Mining

References

• Asahina, H., J. Shinozaki, K. Masuda, Y. Morimitsu, and M. Satake. 2010. Identification of medicinal Dendrobium species by phylogenetic analyses using matK and rbcL sequences. Journal of Natural Medicines 64:133–8. doi:10.1007/s11418-009-0379-8.
   PubMed Web of Science ®Google Scholar
• Berrueta, L. A., R. M. Alonso-Salces, and K. Héberger. 2007. Supervised pattern recognition in food analysis. Journal of Chromatography A 1158:196–214. doi:10.1016/j.chroma.2007.05.024.
   PubMed Web of Science ®Google Scholar
• Bhattacharyya, P., S. Kumaria, N. Job, and P. Tandon. 2015. Phyto-molecular profiling and assessment of antioxidant activity within micropropagated plants of Dendrobium thyrsiflorum: A threatened, medicinal orchid. Plant Cell, Tissue and Organ Culture 122:535–50. doi:10.1007/s11240-015-0783-6.
   Web of Science ®Google Scholar
• Bunte, K., S. Haase, M. Biehl, and T. Villmann. 2012. Stochastic neighbor embedding (SNE) for dimension reduction and visualization using arbitrary divergences. Neurocomputing 90:23–45. doi:10.1016/j.neucom.2012.02.034.
   Web of Science ®Google Scholar
• Cai, G., J. Li, S. Li, D. Huang, and X. Zhao. 2011. Applications of Dendrobium officinale in ancient and modern times. Journal of Traditional Chinese Medicine University of Hunan 31:77–81.
   Google Scholar
• Deng, X., J. Zhang, Y. Wang, M. Li, and G. Li. 2014. Ultraviolet spectrum identification of Dendrobium candidum from different regions. Journal of Yunnan University 36:912–9.
   Google Scholar
• Feng, S., J. Lu, L. Gao, J. Liu, and H. Wang. 2014. Molecular phylogeny analysis and species identification of Dendrobium (Orchidaceae) in China. Biochemical Genetics 52:127–36. doi:10.1007/s10528-013-9633-6.
   PubMed Web of Science ®Google Scholar
• Gad, H. A., S. H. El-Ahmady, M. I. Abou-Shoer, and M. M. Al-Azizi. 2013. Application of chemometrics in authentication of herbal medicines: A review. Phytochemical Analysis 24:1–24. doi:10.1002/pca.2378.
   PubMed Web of Science ®Google Scholar
• Gredilla, A., S. Fdez-Ortiz De Vallejuelo, N. Elejoste, A. de Diego, and J. M. Madariaga. 2016. Non-destructive spectroscopy combined with chemometrics as a tool for green chemical analysis of environmental samples: A review. TrAC Trends in Analytical Chemistry 76:30–9. doi:10.1016/j.trac.2015.11.011.
   Web of Science ®Google Scholar
• He, X., B. Xi, Z. Wei, X. Guo, M. Li, D. An, and H. Liu. 2011. Spectroscopic characterization of water extractable organic matter during composting of municipal solid waste. Chemosphere 82:541–8. doi:10.1016/j.chemosphere.2010.10.057.
   PubMed Web of Science ®Google Scholar
• Jiang, Y., B. David, P. Tu, and Y. Barbin. 2010. Recent analytical approaches in quality control of traditional Chinese medicines-a review. Analytica Chimica Acta 657:9–18. doi:10.1016/j.aca.2009.10.024.
   PubMed Web of Science ®Google Scholar
• Li, A., Y. Shen, X. Zhao, J. Pan, Z. Wang, and Y. Yang. 2011. Initial research of resource and original plant of 17 Fengdou in Yunnan Province. Lishenzhen Medicine and Materia Medica Research 22:723–5.
   Google Scholar
• Li, X., Y. Chen, Y. Lai, Q. Yang, H. Hu, and Y. Wang. 2015. Sustainable utilization of traditional Chinese medicine resources: Systematic evaluation on different production modes. Evidence-Based Complementary and Alternative Medicine 2015:1–10. doi:10.1155/2015/218901.
   Google Scholar
• Li, Y., and Y. Wang. 2018. Differentiation and comparison of Wolfiporia cocos raw materials based on multi-spectral information fusion and chemometric methods. Scientific Reports 8:1–14. http://doi.org/10.1038/s41598-018-31264-1.
   PubMed Web of Science ®Google Scholar
• Li, Y., J. Zhang, and Y. Wang. 2018. FT-MIR and NIR spectral data fusion: A synergetic strategy for the geographical traceability of Panax notoginseng. Analytical and Bioanalytical Chemistry 410:91–103. doi:10.1007/s00216-017-0692-0.
   PubMed Web of Science ®Google Scholar
• Li, Y., Z. Sun, Y. Liu, and C. Liu. 2009. Fingerprint analysis on different species of Herba Dendrobii by IR. Journal of Southwest University for Nationalities⋅(Natural Science Edition) 35:1024–7.
   Google Scholar
• Liang, Y., and W. Wang. 2011. Chromatographic fingerprinting coupled with chemometrics for quality control of traditional Chinese medicines. CHIMIA International Journal for Chemistry 65:944–51. doi:10.2533/chimia.2011.944.
   PubMed Web of Science ®Google Scholar
• Liang, Y., P. Xie, and F. Chau. 2010. Chromatographic fingerprinting and related chemometric techniques for quality control of traditional Chinese medicines. Journal of Separation Science 33:410–21. doi:10.1002/jssc.200900653.
   PubMed Web of Science ®Google Scholar
• Lin, P., Z. Bi, H. Xv, Z. Wang, and L. Xv. 2003. Advances in studies on pharmacology of plants from Dendrobium Sw. Chinese Traditional and Herbal Drugs 34:19–22.
   Google Scholar
• Liu, F., Y. Wang, C. Yang, and H. Jin. 2014. Identification of Dendrobium varieties by infrared spectroscopy. Spectroscopy and Spectral Analysis 34:2968–72.
   Web of Science ®Google Scholar
• Liu, F., Y. Wang, X. Deng, H. Jin, and C. Yang. 2014. Identification of Dendrobium varieties by Fourier transform infrared spectroscopy combined with spectral retrieval. Spectroscopy and Spectral Analysis 34:1548–52.
   Web of Science ®Google Scholar
• Liu, H., C. Feng, Y. Luo, B. Chen, Z. Wang, and H. Gu. 2010. Potential challenges of climate change to Orchid conservation in a wild Orchid hotspot in southwestern China. The Botanical Review 76:174–92. doi:10.1007/s12229-010-9044-x.
   Web of Science ®Google Scholar
• Liu, W., Z. Sun, C. Xu, S. Sun, X. Wei, L. Chen, and Y. Du. 2014. Study on Dendrobium loddigesii Rolfes from different regions and harvest period by FTIR. Spectroscopy and Spectral Analysis 34:1217–21.
   Web of Science ®Google Scholar
• Ma, L., Z. Zhang, X. Zhao, S. Zhang, and H. Lu. 2016. The rapid determination of total polyphenols content and antioxidant activity in Dendrobium officinale using near-infrared spectroscopy. Analytical Methods-UK 8:4584–9. doi:10.1039/C6AY00542J.
   Web of Science ®Google Scholar
• Mantanus, J., E. Rozet, K. Van Butsele, C. De Bleye, A. Ceccato, B. Evrard, P. Hubert, and E. Ziémons. 2011. Near infrared and Raman spectroscopy as process analytical technology tools for the manufacturing of silicone-based drug reservoirs. Analytica Chimica Acta 699:96–106. doi:10.1016/j.aca.2011.05.006.
   PubMed Web of Science ®Google Scholar
• Moros, J., S. Garrigues, and M. D. L. Guardia. 2010. Vibrational spectroscopy provides a green tool for multi-component analysis. TrAC Trends in Analytical Chemistry 29:578–91. doi:10.1016/j.trac.2009.12.012.
   Web of Science ®Google Scholar
• Ng, T. B., J. Liu, J. H. Wong, X. Ye, S. C. Wing Sze, Y. Tong, and K. Y. Zhang. 2012. Review of research on Dendrobium, a prized folk medicine. Applied Microbiology and Biotechnology 93:1795–803. doi:10.1007/s00253-011-3829-7.
   PubMed Web of Science ®Google Scholar
• Oliveri, P., and G. Downey. 2012. Multivariate class modeling for the verification of food-authenticity claims. TrAC Trends in Analytical Chemistry 35:74–86. doi:10.1016/j.trac.2012.02.005.
   Web of Science ®Google Scholar
• Otto, M. 2017. Chemometrics statistical and computer application in analytical chemistry-the third edition. New Jersey, USA: Wiley-VCH.
   Google Scholar
• Pongsrila, P., P. Chomnawang, N. Srisamoot, and P. Wiriyaampaiwong. 2014. DNA finger printing analysis of fourteen species of orchids using ISSR technique. Asia-Pacific Journal of Science and Technology 19:210–6.
   Google Scholar
• Rajer-Kandu, K., J. Zupan, and N. Majcen. 2003. Separation of data on the training and test set for modelling: A case study for modelling of five colour properties of a white pigment. Chemometrics and Intelligent Laboratory Systems 65:221–9.. (02)00110-7 doi:10.1016/S0169-7439(02)00110-7.
   Web of Science ®Google Scholar
• Saptoro, A., M. O. Tadé, and H. Vuthaluru. 2012. A modified Kennard-Stone algorithm for optimal division of data for developing artificial neural network models. Chemical Product and Process Modeling 7 (1):14. doi:10.1515/1934-2659.1645.
   Google Scholar
• Shao, L., H. Gao, Z. Liu, J. Feng, L. Tang, and H. Lin. 2018. Identification of antioxidant proteins with deep learning from sequence information. Frontiers in Pharmacology 9:1036. doi:10.3389/fphar.2018.01036.
   PubMed Web of Science ®Google Scholar
• Takamiya, T., P. Wongsawad, N. Tajima, N. Shioda, J. F. Lu, C. L. Wen, J. B. Wu, T. Handa, H. Iijima, S. Kitanaka, et al. 2011. Identification of Dendrobium species used for herbal medicines based on ribosomal DNA internal transcribed spacer sequence. Biological & Pharmaceutical Bulletin 34:779–82. doi:10.1248/bpb.34.779.
   PubMed Web of Science ®Google Scholar
• Tan, X. M., C. L. Wang, X. M. Chen, Y. Q. Zhou, Y. Q. Wang, A. X. Luo, Z. H. Liu, and S. X. Guo. 2014. In vitro seed germination and seedling growth of an endangered epiphytic orchid, Dendrobium officinale, endemic to China using mycorrhizal fungi (Tulasnella sp.). Scientia Horticulturae-Amsterdam 165:62–8. doi:10.1016/j.scienta.2013.10.031.
   Web of Science ®Google Scholar
• Tang, H., T. Zhao, Y. Sheng, T. Zheng, L. Fu, and Y. Zhang. 2017. Dendrobium officinale Kimura et Migo: A review on its ethnopharmacology, phytochemistry, pharmacology, and industrialization, Evidence-Based Complementary and Alternative Medicine 2017:1–19. doi:10.1155/2017/7436259.
   Google Scholar
• van der Maaten, L., and G. Hinton. 2008. Visualizing data using t-SNE. Journal of Machine Learning Research 9:2579–605.
   Web of Science ®Google Scholar
• Wang, P., and Z. Yu. 2015. Species authentication and geographical origin discrimination of herbal medicines by near infrared spectroscopy: A review. Journal of Pharmaceutical Analysis 5:277–84. doi:10.1016/j.jpha.2015.04.001.
   PubMedGoogle Scholar
• Wang, Y., H. Huang, Z. Zuo, and Y. Wang. 2018. Comprehensive quality assessment of Dendrubium officinale using ATR-FTIR spectroscopy combined with random forest and support vector machine regression. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 205:637–48. doi:10.1016/j.saa.2018.07.086.
   PubMed Web of Science ®Google Scholar
• Wang, Y., Z. Zuo, T. Shen, H. Huang, and Y. Wang. 2018. Authentication of Dendrobium species using near-infrared and ultraviolet-visible spectroscopy with chemometrics and data fusion. Analytical Letters 51:2790–819. http://doi.org/10.1080/00032719.2018.1451874.
   Web of Science ®Google Scholar
• Wei, Y., W. Fan, X. Zhao, W. Wu, and H. Lu. 2014. Rapid authentication of Dendrobium officinale by near-infrared reflectance spectroscopy and chemometrics. Analytical Letters 48:817–29. doi:10.1080/00032719.2014.963595.
   Web of Science ®Google Scholar
• Wu, X., Q. Zhang, and Y. Wang. 2018. Traceability of wild Paris polyphylla Smith var. yunnanensis based on data fusion strategy of FT-MIR and UV-Vis combined with SVM and random forest. Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 205:479–88. doi:10.1016/j.saa.2018.07.067.
   PubMed Web of Science ®Google Scholar
• Xing, X., S. W. Cui, S. Nie, G. O. Phillips, H. D. Goff, and Q. Wang. 2013. A review of isolation process, structural characteristics, and bioactivities of water-soluble polysaccharides from Dendrobium plants. Bioactive Carbohydrates and Dietary Fibre 1:131–47. doi:10.1016/j.bcdf.2013.04.001.
   Google Scholar
• Xu, J., Q. Han, S. Li, X. Chen, X. Wang, Z. Zhao, and H. Chen. 2013. Chemistry, bioactivity and quality control of Dendrobium, a commonly used tonic herb in traditional Chinese medicine. Phytochemistry Reviews 12:341–67. doi:10.1007/s11101-013-9310-8.
   Web of Science ®Google Scholar
• Yang, L., Z. Wang, and L. Xu. 2006. Simultaneous determination of phenols (bibenzyl, phenanthrene, and fluorenone) in Dendrobium species by high-performance liquid chromatography with diode array detection. Journal of Chromatography A 1104:230–7. doi:10.1016/j.chroma.2005.12.012.
   PubMed Web of Science ®Google Scholar
• Yang, Y., W. Bai, M. Li, and D. Feng. 1998. Brief introduction of the Lahu nationality medicine-Emujianaci. Chinese Journal of Ethnomedicine and Ethnopharmacy 34:38–46.
   Google Scholar
• Yuan, Y. H., B. W. Hou, H. J. Xu, J. Luo, and X. Y. Ding. 2011. Identification of the geographic origin of Dendrobium thyrsiflorum on Chinese herbal medicine market using trinucleotide microsatellite markers. Biological & Pharmaceutical Bulletin 34:1794–800. doi:10.1248/bpb.34.1794.
   PubMed Web of Science ®Google Scholar
• Zhang, G., Z. Bi, Z. Wang, L. Xv, and G. Xv. 2003. Advances in studies on chemical constituents from plants of Dendrobium Sw. Chinese Traditional and Herbal Drugs 34:5–8.
   Google Scholar
• Zhang, Y. B., J. Wang, Z. T. Wang, P. P. But, and P. C. Shaw. 2003. DNA microarray for identification of the herb of Dendrobium species from Chinese medicinal formulations. Planta Medica 69:1172–4. http://doi.org/10.1055/s-2003-818015.
   PubMed Web of Science ®Google Scholar