Characterization of Bacteria Inducing Chronic Sinusitis Using Surface-Enhanced Raman Spectroscopy (SERS) with Multivariate Data Analysis

References

• Ai, J., Q. Wu, M. Battino, W. Bai, and L. Tian. 2021. Using untargeted metabolomics to profile the changes in roselle (Hibiscus sabdariffa L.) anthocyanins during wine fermentation. Food Chemistry 364:130425. doi:10.1016/j.foodchem.2021.130425.
   PubMed Web of Science ®Google Scholar
• Akanny, E., A. Bonhommé, C. Commun, A. Doleans‐Jordheim, C. Farre, F. Bessueille, S. Bourgeois, and C. Bordes. 2020. Surface‐enhanced Raman spectroscopy using uncoated gold nanoparticles for bacteria discrimination. Journal of Raman Spectroscopy 51 (4):619–29. doi:10.1002/jrs.5827.
   Web of Science ®Google Scholar
• Bari, R. Z. A., H. Nawaz, M. I. Majeed, N. Rashid, M. Iqbal, M. Akram, N. Yaqoob, S. Yousaf, A. Mushtaq, F. Almas, et al. 2022. Surface-enhanced Raman spectroscopic analysis of centrifugally filtered HBV serum samples. Photodiagnosis and Photodynamic Therapy 38:102808. doi:10.1016/j.pdpdt.2022.102808.
   PubMed Web of Science ®Google Scholar
• Batool, F., H. Nawaz, M. I. Majeed, N. Rashid, S. Bashir, S. Bano, F. Tahir, A. U. Haq, M. Saleem, M. Z. Nawaz, et al. 2021. Surface-enhanced Raman spectral analysis for comparison of PCR products of hepatitis B and hepatitis C. Photodiagnosis and Photodynamic Therapy 35:102440. doi:10.1016/j.pdpdt.2021.102440.
   PubMed Web of Science ®Google Scholar
• Brook, I. 2007. Acute and chronic bacterial sinusitis. Infectious Disease Clinics of North America 21 (2):427–48, vii. doi:10.1016/j.idc.2007.02.001.
   PubMed Web of Science ®Google Scholar
• Chen, X., M. Tang, Y. Liu, J. Huang, Z. Liu, H. Tian, Y. Zheng, M. L. de la Chapelle, Y. Zhang, and W. Fu. 2019. Surface-enhanced Raman scattering method for the identification of methicillin-resistant Staphylococcus aureus using positively charged silver nanoparticles. Microchimica Acta 186 (2):1–8.
   Web of Science ®Google Scholar
• Clement, P. A., C. D. Bluestone, F. Gordts, R. P. Lusk, F. W. Otten, H. Goossens, G. K. Scadding, H. Takahashi, F. L. van Buchem, P. Van Cauwenberge, et al. 1998. Management of rhinosinusitis in children: Consensus meeting, Brussels, Belgium, September 13, 1996. Archives of Otolaryngology-Head & Neck Surgery 124 (1):31–4. doi:10.1001/archotol.124.1.31.
   PubMedGoogle Scholar
• De Gelder, J., K. De Gussem, P. Vandenabeele, and L. Moens. 2007a. Reference database of Raman spectra of biological molecules. Journal of Raman Spectroscopy 38 (9):1133–47. doi:10.1002/jrs.1734.
   Web of Science ®Google Scholar
• De Gelder, J., K. De. Gussem, P. Vandenabeele, M. Vancanneyt, P. De Vos, and L. Moens. 2007b. Methods for extracting biochemical information from bacterial Raman spectra: Focus on a group of structurally similar biomolecules—fatty acids. Analytica Chimica Acta 603 (2):167–75. doi:10.1016/j.aca.2007.09.049.
   PubMed Web of Science ®Google Scholar
• De Gussem, K., P. Vandenabeele, A. Verbeken, and L. Moens. 2005. Raman spectroscopic study of Lactarius spores (Russulales, Fungi). Spectrochimica Acta: Part A, Molecular and Biomolecular Spectroscopy 61 (13–14):2896–908. doi:10.1016/j.saa.2004.10.038.
   PubMed Web of Science ®Google Scholar
• DeMuri, G. P, and E. R. Wald. 2012. Acute bacterial sinusitis in children. New England Journal of Medicine 367 (12):1128–34. doi:10.1056/NEJMcp1106638.
   PubMed Web of Science ®Google Scholar
• Edwards, H., N. Russell, R. Weinstein, and D. Wynn‐Williams. 1995. Fourier transform Raman spectroscopic study of fungi. Journal of Raman Spectroscopy 26 (8–9)‐:911–6. doi:10.1002/jrs.1250260843.
   Web of Science ®Google Scholar
• Efrima, S, and L. Zeiri. 2009. Understanding SERS of bacteria. Journal of Raman Spectroscopy 40 (3):277–88. doi:10.1002/jrs.2121.
   Web of Science ®Google Scholar
• Galat, A. 1980. Study of the Raman scattering and infrared absorption spectra of branched polysaccharides. Acta Biochimica Polonica. 27 (2):135–42.
   PubMed Web of Science ®Google Scholar
• Giana, H. E., L. Silveira, R. A. Zângaro, and M. T. T. Pacheco. 2003. Rapid identification of bacterial species by fluorescence spectroscopy and classification through principal components analysis. Journal of Fluorescence 13 (6):489–93. doi:10.1023/B:JOFL.0000008059.74052.3c.
   Web of Science ®Google Scholar
• Goeller, L. J, and M. R. Riley. 2007. Discrimination of bacteria and bacteriophages by Raman spectroscopy and surface-enhanced Raman spectroscopy. Applied Spectroscopy 61 (7):679–85. doi:10.1366/000370207781393217.
   PubMed Web of Science ®Google Scholar
• Granger, J. H., N. E. Schlotter, A. C. Crawford, and M. D. Porter. 2016. Prospects for point-of-care pathogen diagnostics using surface-enhanced Raman scattering (SERS). Chemical Society Reviews 45 (14):3865–82. doi:10.1039/c5cs00828j.
   PubMed Web of Science ®Google Scholar
• Gunasekera, T., P. Attfield, and D. Veal. 2000. A flow cytometry method for rapid detection and enumeration of fungal spores in the atmosphere. Applied and Environmental Microbiology 66 (3):1228–32. doi:10.1128/AEM.66.3.1228-1232.2000.
   PubMed Web of Science ®Google Scholar
• Kashif, M., M. I. Majeed, M. A. Hanif, and A. ur Rehman. 2020. Surface Enhanced Raman Spectroscopy of the serum samples for the diagnosis of Hepatitis C and prediction of the viral loads. Spectrochimica Acta: Part A, Molecular and Biomolecular Spectroscopy 242:118729. doi:10.1016/j.saa.2020.118729.
   PubMed Web of Science ®Google Scholar
• Laucks, M. L., A. Sengupta, K. Junge, E. J. Davis, and B. D. Swanson. 2005. Comparison of psychro-active arctic marine bacteria and common mesophillic bacteria using surface-enhanced Raman spectroscopy. Applied Spectroscopy 59 (10):1222–8. doi:10.1366/000370205774430891.
   PubMed Web of Science ®Google Scholar
• Le Ru, E, and P. Etchegoin. 2008. Principles of surface-enhanced Raman spectroscopy: And related plasmonic effects. UK: Elsevier.
   Google Scholar
• Lê, L., M. Berge, A. Tfayli, P. Prognon, and E. Caudron. 2018. Discriminative and quantitative analysis of antineoplastic taxane drugs using a handheld Raman spectrometer. BioMed Research International 2018:8746729. doi:10.1155/2018/8746729.
   PubMed Web of Science ®Google Scholar
• Liu, S.-Y., R.-L. Zhang, H. Kang, Z.-J. Fan, and Z. Du. 2013. Human liver tissue metabolic profiling research on hepatitis B virus-related hepatocellular carcinoma. World Journal of Gastroenterology 19 (22):3423. doi:10.3748/wjg.v19.i22.3423.
   PubMed Web of Science ®Google Scholar
• López-Díez, E. C, and R. Goodacre. 2004. Characterization of microorganisms using UV resonance Raman spectroscopy and chemometrics. Analytical Chemistry 76 (3):585–91. doi:10.1021/ac035110d.
   PubMed Web of Science ®Google Scholar
• Maquelin, K., C. Kirschner, L.-P. Choo-Smith, N. A. Ngo-Thi, T. van Vreeswijk, M. Stämmler, H. P. Endtz, H. A. Bruining, D. Naumann, and G. J. Puppels. 2003. Prospective study of the performance of vibrational spectroscopies for rapid identification of bacterial and fungal pathogens recovered from blood cultures. Journal of Clinical Microbiology 41 (1):324–9. doi:10.1128/JCM.41.1.324-329.2003.
   PubMed Web of Science ®Google Scholar
• Melen, I. 1994. Chronic sinusitis: Clinical and pathophysiological aspects. Acta Oto-Laryngologica 114 (Suppl 515):45–8.
   Google Scholar
• Movasaghi, Z., S. Rehman, and I. U. Rehman. 2007. Raman spectroscopy of biological tissues. Applied Spectroscopy Reviews 42 (5):493–541. doi:10.1080/05704920701551530.
   Web of Science ®Google Scholar
• Nawaz, H., N. Rashid, M. Saleem, M. Asif Hanif, M. Irfan Majeed, I. Amin, M. Iqbal, M. Rahman, O. Ibrahim, S. M. Baig, et al. 2017. Prediction of viral loads for diagnosis of Hepatitis C infection in human plasma samples using Raman spectroscopy coupled with partial least squares—regression analysis. Journal of Raman Spectroscopy 48 (5):697–704. doi:10.1002/jrs.5108.
   Web of Science ®Google Scholar
• Nelson, W., R. Manoharan, and J. Sperry. 1992. UV resonance Raman studies of bacteria. Applied Spectroscopy Reviews 27 (1):67–124. doi:10.1080/05704929208018270.
   Web of Science ®Google Scholar
• Neugebauer, U., U. Schmid, K. Baumann, W. Ziebuhr, S. Kozitskaya, V. Deckert, M. Schmitt, and J. Popp. 2007. Towards a detailed understanding of bacterial metabolism—spectroscopic characterization of Staphylococcus epidermidis. Chemphyschem: A European Journal of Chemical Physics and Physical Chemistry 8 (1):124–37. doi:10.1002/cphc.200600507.
   PubMed Web of Science ®Google Scholar
• Nishijima, K., A. Alvarez, P. Hepperly, M. Shintaku, L. Keith, D. Sato, B. Bushe, J. Armstrong, and F. Zee. 2004. Association of Enterobacter cloacae with rhizome root of edible ginger in Hawaii. Plant Disease 88 (12):1318–27. doi:10.1094/PDIS.2004.88.12.1318.
   PubMed Web of Science ®Google Scholar
• Özbalci, B., İ H. Boyaci, A. Topcu, C. Kadılar, and U. Tamer. 2013. Rapid analysis of sugars in honey by processing Raman spectrum using chemometric methods and artificial neural networks. Food Chemistry 136 (3–4):1444–52. doi:10.1016/j.foodchem.2012.09.064.
   PubMed Web of Science ®Google Scholar
• Pahlow, S., S. Meisel, D. Cialla-May, K. Weber, P. Rösch, and J. Popp. 2015. Isolation and identification of bacteria by means of Raman spectroscopy. Advanced Drug Delivery Reviews 89:105–20. doi:10.1016/j.addr.2015.04.006.
   PubMed Web of Science ®Google Scholar
• Pandak, N., I. Pajić-Penavić, A. Sekelj, M. Tomić-Paradžik, I. Čabraja, and B. Miklaušić. 2011. Bacterial colonization or infection in chronic sinusitis. Wiener Klinische Wochenschrift 123 (23–24):710–3. doi:10.1007/s00508-011-0093-x.
   PubMed Web of Science ®Google Scholar
• Paret, M. L., S. K. Sharma, L. M. Green, and A. M. Alvarez. 2010. Biochemical characterization of Gram-positive and Gram-negative plant-associated bacteria with micro-Raman spectroscopy. Applied Spectroscopy 64 (4):433–41. doi:10.1366/000370210791114293.
   PubMed Web of Science ®Google Scholar
• Schulz, H., M. Baranska, and R. Baranski. 2005. Potential of NIR‐FT‐Raman spectroscopy in natural carotenoid analysis. Biopolymers: Original Research on Biomolecules 77 (4):212–21. doi:10.1002/bip.20215.
   PubMed Web of Science ®Google Scholar
• Schuster, K. C., E. Urlaub, and J. Gapes. 2000. Single-cell analysis of bacteria by Raman microscopy: Spectral information on the chemical composition of cells and on the heterogeneity in a culture. Journal of Microbiological Methods 42 (1):29–38. doi:10.1016/S0167-7012(00)00169-X.
   PubMed Web of Science ®Google Scholar
• Shahid, M., I. Naureen, M. Riaz, F. Anjum, H. Fatima, and M. A. Rafiq. 2021. Biofilm inhibition and antibacterial potential of different varieties of garlic (Allium sativum) against sinusitis isolates. Dose-Response: A Publication of International Hormesis Society 19 (4):. doi:10.1177/15593258211050491.
   Web of Science ®Google Scholar
• Sockalingum, G. D., H. Lamfarraj, A. Beljebbar, P. Pina, M. Delavenne, F. Witthuhn, P. Allouch, M. Manfait. 1999. “Vibrational spectroscopy as a probe to rapidly detect, identify, and characterize micro-organisms,” Proc. SP IE 3608, Biomedical Applications of Raman Spectroscopy. doi:10.1117/12.345401.
   Google Scholar
• Stiles, P. L., J. A. Dieringer, N. C. Shah, and R. P. Van Duyne. 2008. Surface-enhanced Raman spectroscopy. Annual Review of Analytical Chemistry (Palo Alto, Calif.) 1:601–26. doi:10.1146/annurev.anchem.1.031207.112814.
   PubMed Web of Science ®Google Scholar
• Synytsya, A., J. Čopı́ková, P. Matějka, and V. Machovič. 2003. Fourier transform Raman and infrared spectroscopy of pectins. Carbohydrate Polymers 54 (1):97–106. doi:10.1016/S0144-8617(03)00158-9.
   Web of Science ®Google Scholar
• Tahir, M., M. I. Majeed, H. Nawaz, S. Ali, N. Rashid, M. Kashif, I. Ashfaq, W. Ahmad, K. Ghauri, F. Sattar, et al. 2020. Raman spectroscopy for the analysis of different exo-polysaccharides produced by bacteria. Spectrochimica Acta: Part A, Molecular and Biomolecular Spectroscopy 237:118408. doi:10.1016/j.saa.2020.118408.
   PubMed Web of Science ®Google Scholar
• Talari, A. C. S., Z. Movasaghi, S. Rehman, and I. U. Rehman. 2015. Raman spectroscopy of biological tissues. Applied Spectroscopy Reviews 50 (1):46–111. doi:10.1080/05704928.2014.923902.
   Web of Science ®Google Scholar
• Wang, J., J. Gao, D. Liu, D. Han, and Z. Wang. 2012. Phenylboronic acid functionalized gold nanoparticles for highly sensitive detection of Staphylococcus aureus. Nanoscale 4 (2):451–4. doi:10.1039/c2nr11657j.
   PubMed Web of Science ®Google Scholar
• Williams, A, and H. Edwards. 1994. Fourier transform Raman spectroscopy of bacterial cell walls. Journal of Raman Spectroscopy 25 (7–8):673–7. doi:10.1002/jrs.1250250730.
   Web of Science ®Google Scholar
• Wu, Q., T. Hamilton, W. H. Nelson, S. Elliott, J. F. Sperry, and M. Wu. 2001. UV Raman spectral intensities of E. coli and other bacteria excited at 228.9, 244.0, and 248.2 nm. Analytical Chemistry 73 (14):3432–40. doi:10.1021/ac001268b.
   PubMed Web of Science ®Google Scholar
• Zeiri, L., B. Bronk, Y. Shabtai, J. Eichler, and S. Efrima. 2004. Surface-enhanced Raman spectroscopy as a tool for probing specific biochemical components in bacteria. Applied Spectroscopy 58 (1):33–40. doi:10.1366/000370204322729441.
   PubMed Web of Science ®Google Scholar
• Zhu, L., J. He, X. Cao, K. Huang, Y. Luo, and W. Xu. 2016. Development of a double-antibody sandwich ELISA for rapid detection of Bacillus Cereus in food. Scientific Reports 6 (1):16092–10. doi:10.1038/srep16092.
   PubMed Web of Science ®Google Scholar