Dynamic Load Balancing for Short-range Parallel Molecular Dynamics Simulations

References

• Zeyao , Mo and Baolin , Zhang . 2001 . Multilevel averaging weight method for dynamic load imbalance problems . Intern. J. Computer Math. , 77 to appear
   Google Scholar
• Kohring , G. A. 1995 . Dynamic load balancing for parallelized particle simulations on MIMD computers . Parallel Computing , 21 : 683 – 693 .
   Web of Science ®Google Scholar
• Heerman , D. W. 1990 . Computer simulation methods in Theoretical Physics , 2nd edition , Tokyo : Springer-Verlag .
   Google Scholar
• Plimpton , S. 1995 . Fast parallel algorithms for short-range molecular dynamics . J. of Comp. Phys. , 117 : 1 – 19 .
   Web of Science ®Google Scholar
• Tamayo , P. , Mesirov , J. P. and Boghosian , B. M. Parallel approaches to short range molecular dynamics simulations . Proceedings of supercomputing '91 . pp. 462 – 470 .
   Google Scholar
• Beazley , D. M. and Lomdahl , P. S. 1994 . Message-passing multi-cell molecular dynamics on the Connection Machine 5 . Parallel Computing , 20 : 173 – 195 .
   Web of Science ®Google Scholar
• Bruge , F. and Fornili , S. L. 1990 . Concurrent molecular dynamics simulation of spinodal phase transition on transputer arrays . Computer Physics Communications , 60 : 31 – 38 .
   Web of Science ®Google Scholar
• Matsubara , M. , Itakura , K. and Boku , T. Large scale molecular dynamics simulations on CP-PACS . Proceedings of HPC ASIA '98 . pp. 321 – 331 .
   Google Scholar
• Hayashi , R. and Horiguchi , S. Relationships between efficiency of dynamic load balancing and particle concentration for parallel molecular dynamics simulation . Proceedings of HPC ASIA '99 . pp. 976 – 983 .
   Google Scholar
• Fonlupt , C. , Marquet , P. and Dekeyser , J. 1998 . Data-parallel load balancing strategies . Parallel Computing , 24 : 1665 – 1684 .
   Web of Science ®Google Scholar
• Ciccotti , G. and Hoover , W. G. , eds. 1986 . Molecular dynamics simulations of Statistical-Mechanical systems , Amsterdam : North-Holland .
   Google Scholar
• Gropp , W. , Lusk , E. and Skjellum , A. 1994 . Using MPI: portable parallel programming with the message-passing interface , Cambridge , MA : MIT Press .
   Google Scholar