37
Views
1
CrossRef citations to date
0
Altmetric
Original Articles

Microarray subgrid detection: a novel algorithm

, &
Pages 669-678 | Received 21 Sep 2006, Accepted 14 Dec 2006, Published online: 02 Jul 2007

References

  • Brown , P. O. and Botstein , D. 1999 . Exploring the new world of the genome with DNA microarrays . Nature Genetics , 21 : 33 – 37 .
  • Morris , D. 2008 . Truly blind microarray gridding . IEEE Transactions on Systems, Man and Cybernetics, Part C , to appear
  • Bajcsy , P. 2006 . An overview of DNA microarray grid alignment and foreground separation approaches . EURASIP Journal on Applied Signal Processing , : 1 – 13 .
  • Axon Instruments Inc . 2005 . GenePix Pro, Product Description . Available online at: http://www.axon.com/GN_Genomics.html
  • Bajcsy , P. 2004 . Gridline: automatic grid alignment in DNA microarray scans . IEEE Transactions on Image Processing , 13 : 15 – 25 .
  • Blekas , K. , Galatsanos , N. and Georgiou , I. 2003 . “ An unsupervised artifact correction approach for the analysis of DNA microarray images ” . In Proceedings of IEEE International Conference on Image Processing , Vol. 2 , 165 – 168 . Washington, DC : IEEE .
  • Bozinov , D. 2003 . Autonomous system for web based microarray image analysis . IEEE Transactions on Nanobioscience , 2 : 215 – 220 .
  • Brändle , N. , Lapp , H. and Bischof , H. 2000 . Fully automatic grid fitting for genetic spot array images containing guide spots . Technical Report PRIP-TR-58, Pattern Recognition and Image Processing Group, Institute of Computer Aided Automation, Vienna University of Technology
  • Fabbri , R. , Costa , L. and Barrera , J. 2002 . “ Towards nonparametric gridding of microarray images ” . In Proceedings of IEEE Digital Signal Processing Conference , Vol. 2 , 623 – 626 . Washington, DC : IEEE .
  • Hirata , R. , Barrera , J. , Hashimoto , R. and Dantas , D. 2001 . “ Microarray gridding by mathematical morphology ” . In Proceedings of Symposium on Computer Graphics and Image Processing , 112 – 119 . Washington, DC : IEEE .
  • Li , Q. , Fraley , C. , Baumgartner , R. , Yeung , K. and Raftery , A. 205 . Robust model-based segmentation of microarray images . Bioinformatics , 21 : 2875 – 2882 .
  • Lonardi , S. and Luo , Y. Gridding and compression of microarray images . Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conference . pp. 122 – 130 . Washington, DC : IEEE .
  • Steinfath , M. , Wruck , W. , Seidel , H. , Lehrach , H. , Radelof , U. and O’Brien , J. 2001 . Automated image analysis for array hybridization experiments . Bioinformatics , 17 : 634 – 641 .
  • Wang , Y.-K. and Huang , C.-W. DNA microarray image analysis using active contour model . Proceedings of the 2004 IEEE Computational Systems Bioinformatics Conferenc , pp. 549 – 550 . Washington, DC : IEEE .
  • Antoniol , G. and Ceccarelli , M. 2005 . “ Microarray image addressing based on the radon transform ” . In Proceedings of IEEE International Conference on Image Processing , 13 – 16 . Washington, DC : IEEE .
  • Fraser , K. , O’Neill , P. , Wang , Z. and Liu , X. 2004 . Copasetic analysis: a framework for the blind analysis of microarray imagery . IEE Systems Biology , 1 : 190 – 196 .
  • Rahnenführer , J. and Bozinov , D. 2004 . Hybrid clustering for microarray image analysis combining intensity and shape features . BMC Bioinformatics , 5

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.