Systematics and ecology of the caecilian Crotaphatrema lamottei (Nussbaum) (Amphibia: Gymnophiona: Scolecomorphidae)

References

• Akaike , H. 1973 . “ Information theory as an extension of the maximum likelihood principle ” . In Second international symposium of information theory , Edited by: Petrov , BN and Csaki , F. Budapest, , Hungary : Akademiai Kiado .
   Google Scholar
• Bergl , RA , Oates , JF and Fotso , R. 2007 . Distribution and protected area coverage of endemic taxa in West Africa's Biafran forests and highlands . Biol Conserv , 134 : 195 – 208 .
   Web of Science ®Google Scholar
• Castresana , J. 2000 . Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis . Mol Biol Evol , 17 : 540 – 552 .
   PubMed Web of Science ®Google Scholar
• Chirio , L and LeBreton , M. 2007 . Atlas de Reptiles du Cameroun , Paris : Publications Scientifiques du MNHN .
   Google Scholar
• Corn , PS. 1994 . “ Straight-line drift fences and pitfall traps ” . In Measuring and Monitoring Biological Diversity: Standard Methods for Amphibians , Edited by: Heyer , WR , Donnelly , RW , McDairmid , RW , Hayleck , LC and Forster , MS. 109 – 117 . Washington, D.C : Smithsonian Institution .
   Google Scholar
• Felsenstein , J. 1981 . Evolutionary trees from DNA sequences: a maximum likelihood approach . J Mol Evol , 17 : 368 – 376 .
   PubMed Web of Science ®Google Scholar
• Felsenstein , J. 1985 . Confidence limits on phylogenies: an approach using the bootstrap . Evolution , 39 : 783 – 791 .
   PubMed Web of Science ®Google Scholar
• Gower , DJ , Loader , SP , Moncrieff , CB and Wilkinson , M. 2004 . Niche separation and comparative abundance of Boulengerula boulengeri and Scolecomorphus vittatus (Amphibia: Gymnophiona) in an East Usambara forest, Tanzania . Afr J Herpetol , 53 : 183 – 190 .
   Google Scholar
• Gower , DJ , Bahir , M , Mapatuna , Y , Pethiyagoda , R , Raheem , D and Wilkinson , M . 2005 . Molecular phylogenetics of Sri Lankan Ichthyophis (Amphibia: Gymnophiona: Ichthyophiidae), with discovery of a cryptic species . The Raffles Bull Zool , Suppl 12 : 153 – 161 .
   Google Scholar
• Gower , DJ and Wilkinson , M. 2005 . Conservation biology of caecilian amphibians . Conserv Biol , 19 : 45 – 55 .
   Web of Science ®Google Scholar
• Gower , DJ , Dharne , M , Bhatta , G , Giri , V , Vyas , R , Govindappa , V , Oommen , OV , George , J , Schouche , Y and Wilkinson , M . 2007 . Remarkable genetic homogeneity in unstriped, long-tailed Ichthyophis (Amphibia: Gymnophiona: Ichthyophiidae) along 1500 km of the Western Ghats, India . J Zool , 272 : 266 – 275 .
   Web of Science ®Google Scholar
• Gower , DJ , Wilkinson , M , Sherratt , E and Kok , PJR . 2010 . A new species of Rhinatrema Dumril & Bibron (Amphibia: Gymnophiona: Rhinatrematidae) from Guyana . Zootaxa , 2391 : 47 – 60 .
   Web of Science ®Google Scholar
• Herrmann , H-W , Schmidt , A , Herrmann , PA and Böhme , W. 2006 . Amphibians and reptiles of the Tchabal Mbabo Mountains, Adamaoua Plateau, Cameroon . Bonn Zool Beitr , 55 : 27 – 35 .
   Google Scholar
• Huelsenbeck , JP and Ronquist , FR. 2001 . MRBAYES: Bayesian inference of phylogenetic trees . Bioinformatics , 17 : 754 – 755 .
   PubMed Web of Science ®Google Scholar
• Huelsenbeck , JP , Ronquist , FR , Nielsen , R and Bollback , JP. 2001 . Bayesian inference of phylogeny and its impact on evolutionary biology . Science , 294 : 2310 – 2314 .
   PubMed Web of Science ®Google Scholar
• IUCN. 2010. IUCN Red List of Threatened Species [Internet]. Version 2010.1 http://www.iucnredlist.org (http://www.iucnredlist.org) (Accessed: 11 March 2011 ).
   Google Scholar
• Katoh , K , Misawa , K , Kuma , K and Miyata , T. 2002 . MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform . Nucleic Acids Res , 30 : 3059 – 3066 .
   PubMed Web of Science ®Google Scholar
• Katoh , K and Toh , H. 2008 . Recent developments in the MAFFT multiple sequence alignment program . Bioinformatics , 9 : 286 – 298 .
   PubMed Web of Science ®Google Scholar
• Kupfer , A. 2007 . “ Sexual size dimorphism in amphibians: an overview ” . In Sex, size, and gender roles. Evolutionary studies of sexual size dimorphism , Edited by: Fairbairn , DJ , Blanckenhorn , WU and Székely , T. 50 – 59 . Oxford : Oxford University Press .
   Google Scholar
• Kupfer , A. 2009 . Sexual size dimorphism in caecilian amphibians: analysis, review and directions for future research . Zoology , 112 : 362 – 369 .
   PubMed Web of Science ®Google Scholar
• Kupfer , A , Nabhitabhata , J and Himstedt , W. 2005 . Life history of amphibians in the seasonal tropics: habitat, community and population ecology of a caecilian (genus Ichthyophis) . J Zool , 266 : 237 – 247 .
   Web of Science ®Google Scholar
• Lawson , D. 2000 . A new caecilian from Cameroon, Africa (Amphibia: Gymnophiona: Scolecomorphidae) . Herpetology , 56 : 77 – 80 .
   Web of Science ®Google Scholar
• Loader , SP , Pisani , D , Cotton , JA , Gower , DJ , Day , JJ and Wilkinson , M. 2007 . Relative time scales reveal multiple origins of parallel disjunct distributions of African caecilian amphibians . Biol Lett , 3 : 505 – 508 .
   PubMed Web of Science ®Google Scholar
• Maisels , FG , Cheek , M and Wild , C. 2000 . Rare plants on Mount Oku summit, Cameroon . Oryx , 34 : 136 – 140 .
   Web of Science ®Google Scholar
• Maisels , F , Keming , M and Toh , C. 2001 . The extirpation of large mammals and implications for montane forest conservation: the case of the Kilum-Ijim Forest, North-west Province, Cameroon . Oryx , 35 : 322 – 331 .
   Web of Science ®Google Scholar
• Measey , GJ. 2004 . Are caecilians rare? An East African perspective . J E Afr Nat Hist , 93 : 1 – 21 .
   Google Scholar
• Measey , GJ. 2006 . Surveying biodiversity of soil herpetofauna: towards a standard quantitative methodology . Eur J Soil Biol , 42 : S103 – S110 .
   Web of Science ®Google Scholar
• Measey , GJ , Gower , DJ , Oommen , OV and Wilkinson , M. 2003 . Quantitative surveying of endogeic limbless vertebrates – a case study of Gegeneophis ramaswamii (Amphibia: Gymnophiona: Caeciliidae) in southern India . Appl Soil Ecol , 23 : 43 – 53 .
   Web of Science ®Google Scholar
• Molua , EL. 2006 . Climatic trends in Cameroon: implications for agricultural management . Climate Res , 30 : 255 – 262 .
   Web of Science ®Google Scholar
• Müller , H , Wilkinson , M , Loader , SP , Wirkner , CS and Gower , DJ. 2009 . Morphology and function of the head in foetal and juvenile Scolecomorphus kirkii (Amphibia: Gymnophiona: Scolecomorphidae) . Biol J Linn Soc , 96 : 491 – 504 .
   Web of Science ®Google Scholar
• Myers , N , Mittermeier , RA , Mittermeier , CG , Da Fonesca , GAB and Kent , J. 2000 . Biodiversity hotspots for conservation priorities . Nature , 403 : 853 – 858 .
   PubMed Web of Science ®Google Scholar
• Nussbaum , RA. 1981 . Scolecomorphus lamottei, a new caecilian from West Africa (Amphibia: Gymnophiona: Scolecomorphidae) . Copeia , 1981 : 265 – 269 .
   Google Scholar
• Nussbaum , RA. 1985 . Systematics of caecilians (Amphibia: Gymnophiona) of the family Scolecomorphidae . Occ Pap Mus Zool, Univ Mich , 713 : 1 – 49 .
   Google Scholar
• Oommen , OV , Measey , GJ , Gower , DJ and Wilkinson , M. 2000 . Distribution and abundance of Gegeneophis ramaswamii (Amphibia: Gymnophiona) in Kerala . Curr Sci , 79 : 1386 – 1389 .
   Web of Science ®Google Scholar
• Posada , D and Crandall , KA. 1998 . MODELTEST: testing the model of DNA substitution . Bioinformatics , 14 : 817 – 818 .
   PubMed Web of Science ®Google Scholar
• Reeves , JH. 1992 . Heterogeneity in the substitution process of amino acid sites of proteins coded for by mitochondrial DNA . J Mol Evol , 35 : 17 – 31 .
   PubMed Web of Science ®Google Scholar
• Rodríguez , F , Oliver , JF , Marín , A and Medina , JR. 1990 . The general stochastic model of nucleotide substitution . J Theor Biol , 142 : 485 – 501 .
   PubMed Web of Science ®Google Scholar
• Roelants , K , Gower , DJ , Wilkinson , M , Loader , SP , Biju , SD , Guillaume , K and Bossuyt , F . 2007 . Patterns of diversification in the history of modern amphibians . Proc Nat Acad Sci USA , 104 : 887 – 892 .
   PubMed Web of Science ®Google Scholar
• Ronquist , F and Huelsenbeck , JP. 2003 . MRBAYES 3: Bayesian phylogenetic inference under mixed models . Bioinformatics , 19 : 1572 – 1574 .
   PubMed Web of Science ®Google Scholar
• San Mauro , D , Gower , DJ , Massingham , T , Wilkinson , M , Zardoya , R and Cotton , JA. 2009 . Experimental design in caecilian systematics: Phylogenetic information of mitochondrial genomes and nuclear rag1 . Syst Biol , 58 : 425 – 438 .
   PubMed Web of Science ®Google Scholar
• San Mauro , D , Gower , DJ , Oommen , OV , Wilkinson , M and Zardoya , R. 2004 . Phylogeny of caecilian amphibians (Gymnophiona) based on complete mitochondrial genomes and nuclear RAG1 . Mol Phylogenet Evol , 33 : 413 – 427 .
   PubMed Web of Science ®Google Scholar
• Scholz , S , Orlik , M , Gonwouo , LN and Kupfer , A. 2009 . Demography and life history of a viviparous Central African caecilian amphibian . J Zool , 280 : 17 – 24 .
   Web of Science ®Google Scholar
• Stamatakis , A. 2006 . RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models . Bioinformatics , 22 : 2688 – 2690 .
   PubMed Web of Science ®Google Scholar
• Stamatakis , A , Blagojevic , F , Nikolopoulos , D and Antonopoulos , C. 2007 . Exploring new search algorithms and hardware for phylogenetics: RAxML meets the IBM Cell . J VLSI Signal Proc , 48 : 271 – 286 .
   Web of Science ®Google Scholar
• Stuart , SN , Hoffmann , M , Chanson , JS , Cox , NA , Berridge , RJ , Ramani , P and Young , BE. , eds. 2008 . Threatened Amphibians of the World , Barcelona : Lynx Edicions, with IUCN – The World Conservation Union, Conservation International and NatureServe .
   Google Scholar
• Taylor , EH. 1968 . The caecilians of the world , Lawrence, KS : University of Kansas Press .
   Google Scholar
• Wilkinson , M and Nussbaum , RA. 2006 . “ Caecilian phylogeny and classification ” . In Reproductive biology and phylogeny of Gymnophiona (Caecilians) , Edited by: Exbrayat , J-M. 39 – 78 . Enfield, NH : Science Publishers .
   Google Scholar
• Yang , Z. 1994 . Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods . J Mol Evol , 39 : 306 – 314 .
   PubMed Web of Science ®Google Scholar
• Zhang , P and Wake , MH . 2009 . A mitogenomic perspective on the phylogeny and biogeography of living caecilians (Amphibia: Gymnophiona) . Mol Phyl Evol , 53 : 479 – 491 .
   PubMed Web of Science ®Google Scholar