References
- A.M. Kretulskie and T.E. Spratt, Biochemistry 45, 3740 (2006).
- A.K. Showalter and M.-D. Tsai, J. Am. Chem. Soc. 123, 1776 (2001).
- B.A.S. Benitez, K. Arora, L. Balistreri, and T. Schlick, J. Mol. Biol. 384, 1086 (2008).
- F. Aboul-ela, D. Koh, I. Tinoco, and F.H. Martin, Nucleic Acids Res. 13, 4811 (1985).
- K.L.B. Borden, T.C. Jenkins, J.V. Skelly, T. Brown, and A.N. Lane, Biochemistry 31, 5411 (1992).
- M. Sharma, A.V. Predeus, S. Mukherjee, and M. Feig, J. Phys. Chem. B 117, 6194 (2013).
- J. Sagi, J. Biomol. Struct. Dyn. 32, 477 (2013).
- J.A. Cognet, J. Gabarro-Arpa, M. Le Bret, G.A. van der Marel, J.H. van Boom, and G.V. Fazakerley, Nucleic Acids Res. 19, 6771 (1991).
- J.V. Skelly, K.J. Edwards, T.C. Jenkins, and S. Neidle, Proc. Natl. Acad. Sci. USA 90, 804 (1993).
- S.J. Johnson and L.S. Beese, Cell 116, 803 (2004).
- G. Natrajan, M.H. Lamers, J.H. Enzlin, H.H. Winterwerp, A. Perrakis, and T.K. Sixma, Nucleic Acids Res. 31, 4814 (2003).
- A.N. Lane and B. Peck, Eur. J. Biochem. 230, 1073–1087 (1995).
- J.A. Ippolito and T. Steitz, J. Mol. Biol. 295, 711 (2000).
- L.-W. Hung, E.L. Holbrook, and S.R. Holbrook, Proc. Natl. Acad. Sci. USA 97, 5107 (2000).
- B.S. Schuwirth, M.A. Borovinskaya, C.W. Hau, W. Zhang, A. Vila-Sanjurjo, J.M. Holton, and J.H. Cate, Science 310, 827 (2005).
- Y. Timsit and S. Bombard, RNA 13, 2098 (2007).
- M.E. Burkard and D.H. Turner, Biochemistry 39, 11748 (2000).
- O.O. Brovarets’, Ph. D. Thesis, Taras Shevchenko National University of Kyiv, Kyiv, 2010.
- O.O. Brovarets’ and D.M. Hovorun, Ukr. Biokhim. Zh. 82, 55 (2010).
- O.S. Kochina, Y.P. Yurenko, and D.M. Hovorun, Biopolym. Cell 23, 167 (2007).
- M.O. Platonov, S.P. Samijlenko, O.O. Sudakov, I.V. Kondratyuk, and D.M. Hovorun, Spectrochim. Acta A: Mol. Biomol. Spectrosc. 62, 112 (2005).
- D. Kosenkov, Y. Kholod, L. Gorb, O. Shishkin, D.M. Hovorun, M. Mons, and J. Leszczynski, J. Phys. Chem. B 113, 6140 (2009).
- A. Furmanchuk, O. Isayev, L. Gorb, O.V. Shishkin, D.M. Hovorun, and J. Leszczynski, Phys. Chem. Chem. Phys. 13, 4311 (2011).
- O.O. Brovarets’, R.O. Zhurakivsky, and D.M. Hovorun, J. Comput. Chem. 35, 451 (2014).
- O.O. Brovarets’, I.M. Kolomiets’, and D.M. Hovorun, in Quantum Chemistry – Molecules for Innovations, edited by T. Tada (In Tech Open Access, Rijeka, 2012), pp. 59–102.
- T.Y. Nikolaienko, L.A. Bulavin, and D.M. Hovorun, Phys. Chem. Chem. Phys. 14, 7441 (2012).
- O.O. Brovarets’, R.O. Zhurakivsky, and D.M. Hovorun, J. Mol. Model. 19, 4223 (2013).
- P.-O. Löwdin, Rev. Mod. Phys. 35, 724 (1963).
- O.O. Brovarets’ and D.M. Hovorun, J. Biomol. Struct. Dyn. 32, 127 (2014).
- O.O. Brovarets’, D.M. Hovorun, J. Biomol. Struct. Dyn. 32, 1474 (2014).
- O.O. Brovarets’, R.O. Zhurakivsky, and D.M. Hovorun, J. Mol. Model. 19, 4119 (2013).
- O.O. Brovarets’, R.O. Zhurakivsky, and D.M. Hovorun, Mol. Phys. (2014). DOI: 10.1080/00268976.2013.877170.
- O.O. Brovarets’, R.O. Zhurakivsky, and D.M. Hovorun, J. Biomol. Struct. Dyn. (2014). DOI: 10.1080/07391102.2014.897259.
- M.J. Frisch, G.W. Trucks, H.B. Schlegel, G.E. Scuseria, M.A. Robb, J.R. Cheeseman, G. Scalmani, V. Barone, B. Mennucci, G.A. Petersson, H. Nakatsuji, M. Caricato, X. Li, H.P. Hratchian, A.F. Izmaylov, J. Bloino, G. Zheng, J.L. Sonnenberg, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, T. Vreven, J.A. Montgomery, Jr., J.E. Peralta, F. Ogliaro, M. Bearpark, J.J. Heyd, E. Brothers, K.N. Kudin, V.N. Staroverov, T. Keith, R. Kobayashi, J. Normand, K. Raghavachari, A. Rendell, J.C. Burant, S.S. Iyengar, J. Tomasi, M. Cossi, N. Rega, J.M. Millam, M. Klene, J.E. Knox, J.B. Cross, V. Bakken, C. Adamo, J. Jaramillo, R. Gomperts, R.E. Stratmann, O. Yazyev, A.J. Austin, R. Cammi, C. Pomelli, J.W. Ochterski, R.L. Martin, K. Morokuma, V.G. Zakrzewski, G.A. Voth, P. Salvador, J.J. Dannenberg, S. Dapprich, A.D. Daniels, O. Farkas, J.B. Foresman, J.V. Ortiz, J. Cioslowski, and D.J. Fox, GAUSSIAN 09 (Revision B.01) (Gaussian Inc., Wallingford, CT, 2010).
- R.G. Parr and W. Yang, Density-Functional Theory of Atoms and Molecules (Oxford University Press, Oxford, 1989).
- J. Tirado-Rives and W.L. Jorgensen, J. Chem. Theory Comput. 4, 297 (2008).
- A.D. Becke, Phys. Rev. A 38, 3098 (1988).
- C. Lee, W. Yang, and R.G. Parr, Phys. Rev. B 37, 785 (1988).
- O.O. Brovarets’ and D.M. Hovorun, Ukr. Biokhim. Zh. 82, 55 (2010).
- O.O. Brovarets’ and D.M. Hovorun, Biopolym. Cell 26, 72 (2010).
- O.O. Brovarets’ and D.M. Hovorun, Biopolym. Cell 26, 295 (2010).
- O.O. Brovarets’ and D.M. Hovorun, Biopolym. Cell 27, 221 (2011).
- O.O. Brovarets’, R.O. Zhurakivsky, and D.M. Hovorun, Biopolym. Cell 26, 398 (2010).
- O.O. Brovarets’ and D.M. Hovorun, Opt. Spectrosc. 111, 750 (2011).
- S.P. Samijlenko, Y.P. Yurenko, A.V. Stepanyugin, and D.M. Hovorun, J. Phys. Chem. B 114, 1454 (2011).
- O.O. Brovarets’ and D.M. Hovorun, J. Biomol. Struct. Dyn. 31, 91 (2013).
- O.O. Brovarets’ and D.M. Hovorun, J. Biomol. Struct. Dyn. (2013). DOI: 10.1080/07391102.2013.852133.
- C.F. Matta, J. Comput. Chem. 31, 1297 (2010).
- A.A. Arabi and C.F. Matta, Phys. Chem. Chem. Phys. 13, 13738 (2011).
- M. Lozynski, D. Rusinska-Roszak, and H.-G. Mack, J. Phys. Chem. A 102, 2899 (1998).
- O.O. Brovarets’, R.O. Zhurakivsky, and D.M. Hovorun, Chem. Phys. Lett. 578, 126 (2013).
- O.O. Brovarets’, R.O. Zhurakivsky, and D.M. Hovorun, Chem. Phys. Lett. 592, 247 (2014).
- M.J. Frisch, M. Head-Gordon, and J.A. Pople, Chem. Phys. Lett. 166, 281 (1990).
- M.J. Frisch, J.A. Pople, and J.S. Binkley, J. Chem. Phys. 80, 3265 (1984).
- P.C. Hariharan and J.A. Pople, Theor. Chim. Acta 28, 213 (1973).
- R. Krishnan, J.S. Binkley, R. Seeger, and J.A. Pople, J. Chem. Phys. 72, 650 (1980).
- T.H. Dunning Jr., J. Chem. Phys. 90, 1007 (1989).
- R.A. Kendall, Jr., T.H. Dunning, and R.J. Harrison, J. Chem. Phys. 96, 6796 (1992).
- C. Peng and H.B. Schlegel, Isr. J. Chem. 33, 449 (1993).
- C. Peng, P.Y. Ayala, H.B. Schlegel, and M.J. Frisch, J. Comput. Chem. 17, 49 (1996).
- H.P. Hratchian and H.B. Schlegel, J. Chem. Phys. 120, 9918 (2004).
- H.P. Hratchian and H.B. Schlegel, in Theory and Applications of Computational Chemistry: The First 40 Years, edited by C.E. Dykstra, G. Frenking, K.S. Kim, and G. Scuseria (Elsevier, Amsterdam, 2005), pp. 195–249.
- H.P. Hratchian and H.B. Schlegel, J. Chem. Theory Comput. 1, 61 (2005).
- S.F. Boys and F. Bernardi, Mol. Phys. 19, 553 (1970).
- M. Gutowski, J.H. Van Lenthe, J. Verbeek, F.B. Van Duijneveldt, and G. Chalasinski, Chem. Phys. Lett. 124, 370 (1986).
- J.A. Sordo, S. Chin, and T.L. Sordo, Theor. Chim. Acta 74, 101 (1988).
- J.A. Sordo, J. Mol. Struct. (THEOCHEM) 537, 245 (2001).
- P.W. Atkins, Physical Chemistry (Oxford University Press, Oxford, 1998).
- O.O. Brovarets’ and D.M. Hovorun, J. Comput. Chem. 34, 2577 (2013).
- O.O. Brovarets’ and D.M. Hovorun, Phys. Chem. Chem. Phys. 15, 20091 (2013).
- O.O. Brovarets’, R.O. Zhurakivsky, and D.M. Hovorun, Phys. Chem. Chem. Phys. 16, 3715 (2014).
- E. Wigner, Zeit. Physik. Chem. B 19, 203 (1932).
- R.F.W. Bader, Atoms in Molecules: A Quantum Theory (Oxford University Press, Oxford, 1990).
- T.A. Keith (2011) AIMAll (Version 11.12.19). http://aim.tkgristmill.com.
- A.G. Ponomareva, Y.P. Yurenko, R.O. Zhurakivsky, T. van Mourik, and D.M. Hovorun, Phys. Chem. Chem. Phys. 14, 6787 (2012).
- A.G. Ponomareva, Y.P. Yurenko, R.O. Zhurakivsky, T. van Mourik, and D.M. Hovorun, J. Biomol. Struct. Dyn. 32, 730 (2014).
- O.O. Brovarets’, Y.P. Yurenko, and D.M. Hovorun, J. Biomol. Struct. Dyn. 32, 993 (2014).
- A.V. Iogansen, Spectrochim. Acta A: Mol. Biomol. Spectrosc. 55, 1585 (1999).
- E. Espinosa, E. Molins, and C. Lecomte, Chem. Phys. Lett. 285, 170 (1998).
- I. Mata, I. Alkorta, E. Espinosa, and E. Molins, Chem. Phys. Lett. 507, 185 (2011).
- C.F. Matta, N. Castillo, and R.J. Boyd, J. Phys. Chem. B 110, 563 (2006).
- W. Saenger, Principles of Nucleic Acid Structure (Springer, New York, 1984).
- O.O. Brovarets’ and D.M. Hovorun, Phys. Chem. Chem. Phys. 16, 9074 (2014).
- V. Zoete and M. Meuwly, J. Chem. Phys. 121, 4377 (2004).
- O.O. Brovarets’, Y.P. Yurenko, I. Ya. Dubey, and D.M. Hovorun, J. Biomol. Struct. Dyn. 29, 1101 (2012).
- D.N. Govorun, V.D. Danchuk, Ya.R. Mishchuk, I.V. Kondratyuk, N.F. Radomsky, and N.V. Zheltovsky, J. Mol. Struct. 267, 99 (1992).
- T.Y. Nikolaienko, L.A. Bulavin, and D.M. Hovorun, J. Biomol. Struct. Dyn. 29, 563 (2011).
- O.V. Shishkin, A. Pelmenschikov, D.M. Hovorun, and J. Leszczynski, Chem. Phys. 260, 317 (2000).
- A.J. Bondi, J. Phys. Chem. 68, 441 (1964).
- P. Politzer, J.S. Murray, and P. Jaque, J. Mol. Model. 19, 4111 (2013).