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Plant Pathogens

Comparison of AFLP fingerprints and ITS sequences as phylogenetic markers in Ustilaginomycetes

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Pages 510-521 | Accepted 28 Dec 1999, Published online: 04 Jun 2019

LITERATURE CITED

  • Aarts HJM, van Lith LAJT, Keijer J. 1998. High-resolution genotyping of Salmonella strains by AFLP-fingerprinting. Lett Appl Microbiol 26: 131–135.
  • Agrios GN. 1988. Plant pathology. 3rd ed. New York: Academic Press. 803 p.
  • Albertson RC, Markert JA, Danley PD, Kocher TD. 1999. Phylogeny of a rapidly evolving clade: the cichlid fishes of Lake Malawi, East Africa. Proc Natl Acad Sci USA 96: 5107–5110.
  • Bakkeren G, Gibbard B, Yee A, Froeliger E, Leong S, Kronstad JW. 1992. The a and b loci of Ustilago maydis hybridize with DNA sequences from other smut fungi. Mol Pl-Microbe Interact 5: 347–355.
  • Bakkeren G, Gibbard B, Yee A, Froeliger E, Leong S, Kronstad JW., Kronstad JW. 1993. Conservation of the b mating-type gene complex among bipolar and tetrapolar smut fungi. Pl Cell 5: 123–136.
  • Bakkeren G, Gibbard B, Yee A, Froeliger E, Leong S, Kronstad JW., Kronstad JW.. 1994. Linkage of mating-type loci distinguishes bipolar from tetrapolar mating in basidiomycetous smut fungi. Proc Natl Acad Sci USA 91: 7085–7089.
  • Bakkeren G, Gibbard B, Yee A, Froeliger E, Leong S, Kronstad JW., Kronstad JW.. 1996. The pheromone cell signalling components of the Ustilago a mating-type loci determine intercompatibility between species. Genetics 143: 1601–1613.
  • Bauer R, Oberwinkler F, Vanky K. 1997. Ultrastructural markers and systematics in smut fungi and allied taxa. Can J Bot 75: 1273–1314.
  • Baum B. 1986. Numerical taxonomic analyses of the Poaceae. In: Soderstrom TR, Hilu KW, Campell CS, Barkworth ME, eds. Grass systematics and evolution. Washington, DC: Smithsonian Institution Press. p 334–342.
  • Begerow D, Bauer R, Oberwinkel F. 1997. Phylogenetic studies on nuclear large subunit ribosomal DNA sequences of smut fungi and related taxa. Can J Bot 75: 2045–2056.
  • Berbee ML, Taylor JW. 1992. Dating the evolutionary radiations of the true fungi. Can J Bot 71: 1114–1127.
  • Blanz PA, Gottschalk M. 1984. A comparison of 5S ribosomal RNA nucleotide sequences from smut fungi. Syst Appl Microbiol 5: 518–526.
  • Boidin J. 1986. Intercompatibility and the species concept in the saprobic basidiomycotina. Mycotaxon 26: 319–336.
  • Caetano-Anolles G, Gresshoff PM, eds. 1997. DNA markers, protocols, applications and overviews. New York: Wiley-Liss. 364 p.
  • Davis JI, Soreng RJ. 1993. Phylogenetic structure in the grass family (Poaceae) as inferred from chloroplast DNA restriction site variation. Am J Bot 80: 1444–1454.
  • Devereux JP, Haeberli I, Smithies O. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucl Acids Res 12: 387–395.
  • Durán R. 1987. Ustilaginales of Mexico. Pullman, Washington: Washington State University. 331 p.
  • Ferris VR, Ferris JM, Faghihi J. 1993. Variation in spacer ribosomal DNA in some cyst-forming species of plant-parasitic nematodes. Fundam Appl Nematol 16: 177–184.
  • Fischer JW. 1953. Manual of the North American smut fungi. New York: The Ronald Press. 343 p.
  • Fischer JW., Holton CS. 1957. Biology and control of the smut fungi. New York: The Ronald Press. 622 p.
  • Fullerton RA, Nielsen J. 1973. Identical genes for virulence in the smuts Ustilago hordei and U. nigra, and inheritance of virulence on the barley cultivars Keystone and Conquest. Can J Plant Sci 54: 253–257.
  • Guimaraes CT, Sills GRB, Sobral WS. 1997. Comparative mapping of Andropogoneae: Saccharum L. (sugarcane) and its relation to sorghum and maize. Proc Natl Acad Sci USA 94: 14261–14266.
  • Holliday P. 1992. A dictionary of plant pathology. Cambridge, UK: Cambridge University Press. 369 p.
  • Hsiao C, Chatterton NJ, Asay KH, Jensen KB. 1995a. Phylogenetic relationships of the monogenomic species of the wheat tribe, Triticeae (Poaceae), inferred from nuclear rDNA (internal transcribed spacer) sequences. Genome 38: 211–223.
  • Hsiao C, Chatterton NJ, Asay KH, Jensen KB.. 1995b. Molecular phylogeny of the Pooideae (Poaceae) based on nuclear rDNA (ITS) sequences. Theor Appl Genet 90: 389–398.
  • Huang H-Q, Nielsen J. 1984. Hybridization of the seedling-infecting Ustilago spp. pathogenic on barley and oats, and a study of the genotypes conditioning the morphology of their spore walls. Can J Bot 62: 603–608.
  • Huys G, Coopman R, Janssen P, Kersters K 1996. Highresolution genotypic analysis of the genus Aeromonas by AFLP fingerprinting. Int J Syst Bacteriol 46: 572–580.
  • Janssen P, Coopman R, Huys G, Swings J, Bleeker M, Vos P, Zabeau M, Kersters K 1996. Evaluation of the DNA fingerprinting method AFLP as a new tool in bacterial taxonomy. Microbiology 142: 1881–1893.
  • Kim WK Rohringer R, Nielsen J. 1983. Comparison of polypeptides in Ustilago spp. pathogenic on wheat, barley and oats: a chemotaxonomic study. Can J Bot 62: 1431–1437.
  • Kolmer JA, Liu JQ, Sies M. 1995. Virulence and molecular polymorphism in Puccinia recondita f. sp. tritici in Canada. Phytopathology 85: 276–285.
  • Kronstad JW, Leong SA. 1989. Isolation of two alleles of the b locus of Ustilago maydis. Proc Natl Acad Sci USA 86: 978–982.
  • Kropp BR, Hansen DR, Wolf PG, Flint KM, Thomson SV. 1997. A study on the phylogeny of the Dyer's woad rust fungus and other species of Puccinia from crucifers. Phytopathology 87: 565–571.
  • Lee N, Bakkeren G, Wong K Sherwood JE, Kronstad JW. 1999. The mating-type and pathogenicity locus of the fungus Ustilago hordei spans a 500-kb region. Proc Natl Acad Sci USA 96: 15026–15031.
  • Liang H, Hilu KW. 1996. Application of the matK gene sequences to grass systematics. Can J Bot 74: 125–134.
  • Majer D, Mithen R, Lewis BG, Vos P, Oliver RP. 1996. The use of AFLP fingerprinting for the detection of genetic variation in fungi. Mycol Res 100: 1107–1111.
  • McCluskey K Mills D. 1990. Identification and characterization of chromosome length polymorphisms among strains representing fourteen races of Ustilago hordei. Mol Pl-Microbe Interact 3: 366–373.
  • Metcalf DR. 1962. Inheritance of resistance to loose smut, covered smut and false loose smut in the barley variety Jet. Can J Pl Sci 42: 176–189.
  • Nielsen J. 1968. Experiments on vegetative dissociation of the dikaryon and on lysis of hybrid sporidia of the cross Ustilago avenae X U. kolleri. Can J Bot 46: 487–496.
  • Nielsen J.. 1978. Two grasses as common hosts for all species of Ustilago parasitic on wheat, barley and oats. Can J Bot 56: 2712–2716.
  • Nielsen J.. 1993. Host specificity of Ustilago avenae and U. hordei on eight species of Avena. Can J Pl Pathol 15: 14–16.
  • Rehner SA, Uecker FA. 1994. Nuclear ribosomal internal transcribed spacer phylogeny and host diversity in the ceolomycete Phomopsis. Can J Bot 72: 1666–1674.
  • Roux C, Almaraz T, Durrieu G. 1998. Phylogeny of some smut fungi based on ITS sequence analysis. Compt Rend Acad Sci Ser III-Life Sci 311: 603–609.
  • Seymour AB. 1929. Host index of the fungi of North America. Cambridge, Massachusetts: Harvard University Press. 732 p.
  • Swann E, Taylor JW. 1993. Higher taxa of basidiomycetes: an 18S rRNA gene perspective. Mycologia 85: 923–936.
  • Swann EC, Frieders EM, McLaughlin DJ. 1999. Microbotryum, Kriegeria and the changing paradigm in basidiomycete classification. Mycologia 91: 51–66.
  • Swofford DL. 1999. PAUP: Phylogenetic Analysis Using Parsimony. Version 4.0b2. Sunderland, Massachusetts: Sinauer Associates.
  • Tapke VF. 1945. New physiologic races of Ustilago hordei. Phytopathology 35: 970–976.
  • Tapke VF.. 1951. New physiologic races of Ustilago nigra from the United States and Israel. Phytopathology 41: 139–141.
  • Thomas PL. 1989. Genetic modification of echinulation on teliospores of Ustilago hordei X U. nigra hybrids. Bot Gaz 150: 319–322.
  • Thomas PL., Huang H-Q, 1985. Inheritance of virulence on barley in the hybrids Ustilago aegilopsidis X U. hordei and U. aegilopsidis x U. nigra. Can J Genet Cytol 27: 312–317.
  • van der Lee T, de Witte I, Drenth A, Alfonso C, Govers F. 1997. AFLP linkage map of the Oomycete Phytophthora infestans. Fungal Genet Biol 21: 278–291.
  • Vánky K. 1994. European smut fungi. New York: Gustav Fischer. 570 p.
  • Vos P, Hogers R, Bleeker M, Reljans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Ruiper M, Zabeau M. 1995. AFLP: a new technique for DNA fingerprinting. Nucl Acids Res 23: 4407–4414.
  • Vos P, Hogers R, Bleeker M, Reljans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Ruiper M, Zabeau M., Kuiper M. 1997. AFLP analysis. In: Caetano-Anolles G, Gresshoff PM, eds. DNA markers, protocols, applications and overviews. New York: Wiley-Liss. p 115–132.
  • White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innes MA, Gelfand DA, Sninsky JJ, White TJ, eds. PCR protocols, a guide to methods and applications. New York: Academic Press Inc. p 315–322.
  • Williams JGK, Hanafey MK, Rafalski JA, Tingey SV. 1993. Genetic analysis using random amplified polymorphic DNA markers. Methods Enzymol 218: 704–740.
  • Willits DA, Sherwood JE. 1999. Polymerase chain reaction detection of Ustilago hordei in leaves of susceptible and resistant barley varieties. Phytopathology 89: 212–217.
  • Zabeau M, Vos P. 1993. Selective restriction fragment amplification: a general method for DNA fingerprinting. European Patent Office, publication 0 534 858 Al.
  • Zambino PJ, Szabo LJ. 1993. Phylogenetic relationships of selected cereal and grass rusts based on rDNA sequence analysis. Mycologia 85: 401–414.

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