Phylogeny and diversity of Fomitiporella (Hymenochaetales, Basidiomycota)

LITERATURE CITED

• Amalfi M, Decock C. 2013. Fomitiporia castilloi sp. nov. and multiple clades around F. apiahyna and F. texana in Meso- and South America evidenced by multiloci phylogenetic inferences. Mycologia 105:873–887.
   Web of Science ®Google Scholar
• Amalfi M, Robledo G, Decock C. 2014. Fomitiporia baccharidis comb. nov., a little known species from high elevation Andean forests and its affinities within the neotropical Fomitiporia lineages. Mycological Progress 13:1075–1087.
   Web of Science ®Google Scholar
• Binder M, Hibbett DS, Larsson KH, Larsson E, Langer E, Langer G. 2005. The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes). Systematics and Biodiversity 3:113–157.
   Web of Science ®Google Scholar
• Chen JJ, Cui BK, Dai YC. 2016. Global diversity and molecular systematics of Wrightoporia s.l. (Russulales, Basidiomycota). Persoonia 37:21–36.
   PubMed Web of Science ®Google Scholar
• Dai YC. 1999. Phellinus sensu lato (Aphyllophorales, Hymenochaetaceae) in East Asia. Acta Botanica Fennica 166:1–115.
   Google Scholar
• Dai YC. 2010. Hymenochaetaceae (Basidiomycota) in China. Fungal Diversity 45:131–343.
   Web of Science ®Google Scholar
• Dai YC, Cui BK, Yuan HS, Li BD. 2007. Pathogenic wood-decaying fungi in China. Forest Pathology 37:105–120.
   Web of Science ®Google Scholar
• Dai YC, Yang ZL, Cui BK, Yu CJ, Zhou LW. 2009. Species diversity and utilization of medicinal mushrooms and fungi in China [review]. International Journal of Medicinal Mushrooms 11:287–302.
   Web of Science ®Google Scholar
• Darriba D, Taboada GL, Doallo R, Posada D. 2012. jModelTest 2: more models, new heuristics and parallel computing. Nature Methods 9:772.
   Web of Science ®Google Scholar
• Decock C, Amalfi M, Robledo G, Castillo G. 2013. Phylloporia nouraguensis, an undescribed species on Myrtaceae from French Guiana. Cryptogamie Mycologie 34:15–27.
   Web of Science ®Google Scholar
• Douanla-Meli C, Ryvarden L, Langer E. 2007. Studies of tropical African pore fungi (Basidiomycota, Aphyllophorales): three new species from Cameroon. Nova Hedwigia 84:409–420.
   Web of Science ®Google Scholar
• Gilbertson RL, Ryvarden L. 1986. North American polypores. Oslo, Norway: Fungiflora. 433 p.
   Google Scholar
• Guindon S, Gascuel O. 2003. A simple, fast and accurate method to estimate large phylogenies by maximum-likelihood. Systematics and Biodiversity 52:696–704.
   Google Scholar
• Hattori T, Sakayaroj J, Jones EBG, Suetrong S, Preedanon S, Klaysuban A. 2014. Three species of Fulvifomes (Basidiomycota, Hymenochaetales) associated with rots on mangrove tree Xylocarpus granatum in Thailand. Mycoscience 55:344–354.
   Web of Science ®Google Scholar
• Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30:772–780.
   PubMed Web of Science ®Google Scholar
• Katoh K, Toh H. 2008. Recent developments in the MAFFT multiple sequence alignment program. Brief Bioinformatics 9:286–298.
   PubMed Web of Science ®Google Scholar
• Kirk PM, Cannon PF, Minter DW, Stalpers JA. 2008. Dictionary of the fungi. 10th ed. Oxon, UK: CAB International. 771 p.
   Google Scholar
• Larsen MJ, Cobb-Poulle LA. 1990. Phellinus (Hymenochaetaceae). A survey of the world taxa. Synopsis Fungorum 3:1–206.
   Google Scholar
• Larsson KH, Parmasto E, Fischer M, Langer E, Nakasone K, Redhead S. 2006. Hymenochaetales: a molecular phylogeny for the hymenochaetoid clade. Mycologia 98:926–936.
   PubMed Web of Science ®Google Scholar
• Murrill WA. 1907. Polyporaceae 1. North American Flora 9:1–72.
   Google Scholar
• Núñez M, Ryvarden L. 2000. East Asian polypores 1. Ganodermataceae and Hymenochaetaceae. Synopsis Fungorum 13:1–168.
   Google Scholar
• Pattengale ND, Alipour M, Bininda-Emonds ORP, Moret BME, Stamatakis A. 2010. How many bootstrap replicates are necessary? Journal of Computational Biology 17:337–354.
   Google Scholar
• Petersen JH. 1996. The Danish Mycological Society’s color-chart. Greve, Danmark: Foreningen til Svampekundskabens Fremme. 6 p.
   Google Scholar
• Pilát A. 1940. Basidiomycetes chinenses. Annals of Microbiology 38:63–68.
   Google Scholar
• Rajchenberg M, Pildain MB, Bianchinotti MV, Barroetaveña C. 2015. The phylogenetic position of poroid Hymenochaetaceae (Hymenochaetales, Basidiomycota) from Patagonia, Argentina. Mycologia 107:754–767.
   PubMed Web of Science ®Google Scholar
• Ronquist F, Teslenko M, van der Mark P, Ayres D, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematics and Biodiversity 61:539–542.
   Google Scholar
• Ryvarden L. 1991. Genera of polypores. Nomenclature and taxonomy. Synopsis Fungorum 5:1–363.
   Google Scholar
• Ryvarden L. 2005. The genus Inonotus. Synopsis Fungorum 21:1–149.
   Google Scholar
• Ryvarden L, Gilbertson RL. 1994. European polypores. 2. Meripilus–Tyromyces. Synopsis Fungorum 7:394–743.
   Google Scholar
• Ryvarden L, Johansen I. 1980. A preliminary polypore flora of East Africa. Oslo, Norway: Fungifora. 636 p.
   Google Scholar
• Santana MC, Amalfi M, Robledo G, Silveira RMB, Decock C. 2014. Fomitiporia neotropica, a new species from South America evidenced by multilocus phylogenetic analyses. Mycological Progress 13:601–615.
   Google Scholar
• Silvestro D, Michalak I. 2012. raxmlGUI: a graphical front-end for RAxML. Organisms Diversity and Evolution 12:335–337.
   Google Scholar
• Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688–2690.
   PubMed Web of Science ®Google Scholar
• Wagner T, Fischer M. 2001. Natural groups and a revised system for the European poroid Hymenochaetales (Basidiomycota) supported by nSLU rDNA sequence data. Mycological Research 105:773–782.
   Web of Science ®Google Scholar
• Wagner T, Fischer M. 2002a. Proceedings towards a natural classification of the worldwide taxa Phellinus s.l. and Inonotus s.l., and phylogenetic relationships of allied genera. Mycologia 94:998–1016.
   PubMed Web of Science ®Google Scholar
• Wagner T, Fischer M. 2002b. Classification and phylogenetic relationships of Hymenochaete and allied genera of the Hymenochaetales, inferred from rDNA sequence data and nuclear behaviour of vegetative mycelium. Mycological Progress 94:93–104.
   Google Scholar
• White TJ, Bruns TD, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols, a guide to methods and applications. San Diego, CA: Academic Press. p. 315–322.
   Google Scholar
• Yombiyeni P, Douanla-Meli C, Amalfi M, Decock C. 2011. Poroid Hymenochaetaceae from Guineo-Congolian rainforest: Phellinus gabonensis sp. nov. from Gabon—taxonomy and phylogenetic relationships. Mycological Progress 10:351–362.
   Web of Science ®Google Scholar
• Yu HY, Zhao CL, Dai YC. 2013. Inonotus niveomarginatus and I. tenuissimus spp. nov. (Hymenochaetales), resupinate species from tropical China. Mycotaxon 124:61–68.
   Google Scholar
• Zhou LW. 2014a. Fomitiporella caviphila sp. nova (Hymenochaetaceae Basidiomycota) from Eastern Chain, with a preliminary discussion on the taxonomy of Fomitiporella. Annales Botanici Fennici 51:279–284.
   Google Scholar
• Zhou LW. 2014b. Fulvifomes hainanensis sp. nov. and F. indicus comb. nov. (Hymenochaetales, Basidiomycota) evidenced by a combination of morphology and phylogeny. Mycoscience 55:70–77.
   Google Scholar
• Zhou LW. 2014c. Notes on the taxonomic positions of some Hymenochaetaceae (Basidiomycota) species with colored basidiospores. Phytotaxa 177:183–187.
   Google Scholar
• Zhou LW. 2015a. Four new species of Phylloporia (Hymenochaetales, Basidiomycota) from tropical China with a key to Phylloporia species worldwide. Mycologia 107:1184–1192.
   PubMed Web of Science ®Google Scholar
• Zhou LW. 2015b. Fulvifomes imbricatus and F. thailandicus (Hymenochaetales, Basidiomycota): two new species from Thailand based on morphological and molecular evidence. Mycological Progress 14:89.
   Google Scholar
• Zhou LW, Dai YC. 2012. Phylogeny and taxonomy of Phylloporia (Hymenochaetales) with the description of five new species and a key to worldwide species. Mycologia 104:211–222.
   PubMed Web of Science ®Google Scholar
• Zhou LW, Vlasák J, Decock C, Assefa A, Stenlid J, Abate D, Wu SH, Dai YC. 2016. Global diversity and taxonomy of the Inonotus linteus complex (Hymenochaetales, Basidiomycota): Sanghuangporus gen. nov., Tropicoporus excentrodendri and T. guanacastensis gen. et spp. nov., and 17 new combinations. Fungal Diversity 77:335–347.
   Web of Science ®Google Scholar