Preliminary phylogeny of Coemansia (Kickxellales), with descriptions of four new species from Taiwan

LITERATURE CITED

• Bainier G. 1879. Note sur le Martensella (Coemansia) spiralis. Bulletin de la Société botanique de France 26:245–246.
   Google Scholar
• Bainier G. 1906. Mycothèque de l’Ecole de Pharmacie.—VIII. Recherches sur les Coemansia et sur l’Acrostalagmus nigripes n. sp. Bulletin de la Société Mycologique de France 22:216–223.
   Google Scholar
• Benjamin RK. 1958. Sexuality in the Kickxellaceae. Aliso 4:149–169.
   Google Scholar
• Benjamin RK. 1959. The merosporangiferous Mucorales. Aliso 4:321–433.
   Google Scholar
• Benjamin RK. 1963. Addenda to “The merosporangiferous Mucorales” II. Aliso 5:273–278.
   Google Scholar
• Benjamin RK. 1966. The merosporangium. Mycologia 58:1–42.
   Google Scholar
• Benjamin RK. 1979. Zygomycetes and their spores. In: Kendrick B, ed. The whole fungus. The sexual-asexual synthesis. Vol. 2. Ottawa, Canada: National Museums of Canada. p. 573–616.
   Google Scholar
• Benny GL, Aldrich HC. 1975. Ultrastructural observations on septal and merosporangial ontogeny in Linderina pennispora (Kickxellales; Zygomycetes). Canadian Journal of Botany 53:2325–2335.
   Google Scholar
• Benny GL, Ho H-M, Lazarus KL, Smith ME. 2016. Five new species of the obligate mycoparasite Syncephalis (Zoopagales, Zoopagomycotina) from soil. Mycologia 108:1114–1129.
   PubMed Web of Science ®Google Scholar
• Cheng JY, Wu FM. 1964. The Mucorales of China I. Choanephoraceae. Acta Phytotaxonomica Sinica 9:13–30.
   Google Scholar
• Chien CY. 1971. A new species of Coemansia. Mycologia 63:1046–1050.
   Google Scholar
• Chuang SC, Ho HM. 2011. The merosporangiferous fungi from Taiwan (VIII): two new records of Coemansia (Kickxellales, Kickxellomycotina). Taiwania 56:295–300.
   Google Scholar
• Chuang SC, Ho HM, Benny GL, Lee CF. 2013. Two new Ramicandelaber species from Taiwan. Mycologia 105:320–334.
   Web of Science ®Google Scholar
• Coemans E. 1862. Spigilége Mycologique. N° III.—Notice sur un champignon nouveau: Kickxella alabastrina, Cms. Bulletin de la Société royale de botanique de Belgique 1:155–159.
   Google Scholar
• Coemans E. 1863. Quelques Hyphomyètes nouveaux.—Ire notice.—1. Mortierella polycephala et II. Martensella pectinata. Bulletins de l'Académie royale des sciences, des lettres et des beaux-arts de Belgique, Série 2, 15:536–544.
   Google Scholar
• Eidam E. 1887. Coemansia spiralis. Jahres-Bericht der Schlesischen Gesellschaft für Vaterländische Cultur 65:262–263.
   Google Scholar
• Edgar RC. 2004a. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113.
   PubMed Web of Science ®Google Scholar
• Edgar RC. 2004b. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32:1792–1797.
   PubMed Web of Science ®Google Scholar
• Graham GC, Mayers P, Henry RJ. 1994. A simplified method for preparation of fungal genomic DNA for PCR and RAPD analysis. Biotechniques 16:48–50.
   PubMed Web of Science ®Google Scholar
• Hillis DM, Bull JJ. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Systematic Biology 42:182–192.
   Web of Science ®Google Scholar
• Ho HM, Benny GL. 2007. Two new species of Syncephalis from Taiwan, with a key to the Syncephalis found in Taiwan. Botanical Studies 48:319–324.
   Web of Science ®Google Scholar
• Ho HM, Kirk PM. 2009. Piptocephalis formosana, a new species from Taiwan. Botanical Studies 50:69–72.
   Web of Science ®Google Scholar
• Kirk PM. 1984. A monograph of the Choanephoraceae. Mycological Papers 152:1–61.
   Google Scholar
• Kurihara Y, Sukarno N, Ilyas M, Yuniarti E, Mangunwardoyo W, Park JY, Saraswati R, Widyastuti Y, Ando K. 2008. Indonesian Kickxellales: two species of Coemansia and Linderina. Mycoscience 49:250–257.
   Web of Science ®Google Scholar
• Kurihara Y, Tokumasu S, Chien CY. 2000. Coemansia furcata sp. nov. and its distribution in Japan and Taiwan. Mycoscience 41:579–583.
   Google Scholar
• Kwaśna H, Bateman GL, Dawson WAJM. 1999. Coemansia species from the rhizospheres of wheat and barley in the United Kingdom. Mycological Research 103:896–900.
   Google Scholar
• Kwaśna H, Richardson MJ, Bateman GL. 2002. Morphological variation in the Coemansia spiralis complex. Mycological Research 106:252–256.
   Web of Science ®Google Scholar
• Lanfear R, Calcott B, Ho SYW, Guindon S. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution 29:1695–1701.
   PubMed Web of Science ®Google Scholar
• Lichtwardt RW. 1986. The Trichomycetes, fungal associates of arthropods. New York: Springer. 343 p.
   Google Scholar
• Linder DH. 1943. The genera Kickxella, Martensella, and Coemansia. Farlowia 1:49–77.
   Google Scholar
• Maddison WP, Maddison DR. 2016. Mesquite: a modular system for evolutionary analysis. Version 3.10. [cited 2016 06 06]. Available from: http://mesquiteproject.org
   Google Scholar
• Milko AA. 1974. Identification of Mucoralean Fungi. Kiev, USSR: Academy of Science Ukrainian S. S. R. 303 p. Russian.
   Google Scholar
• Miller MA, Schwartz T, Pickett BE, He S, Klem EB, Scheuermann RH, Passarotti M, Kaufman S, O'Leary MA. 2015. A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway. Evolutionary Bioinformatics 11:43–48.
   Google Scholar
• O’Donnell K. 1993. Fusarium and its near relatives. In: Reynolds DR, Taylor JW, eds. The fungal holomorph: mitotic, meiotic and pleomorphic speciation in fungal systematics. Wallingford, UK: CAB International. p. 225–233.
   Google Scholar
• O’Donnell K, Cigelnik E, Benny GL. 1998. Phylogenetic relationships among the Harpellales and Kickxellales. Mycologia 90:624–639.
   Web of Science ®Google Scholar
• Schwarzman CP. 1957. A new type of fungus Coemansia almaatensis S. Schwarzman sp. nov. In: Shwarzman CP, Leonova NM, Antipova GN, eds. Trudy Instituta botaniki Akademii nauk Kazakhskoǐ SSR, Alma-Ata, Kazakhstan [Works of the Botanical Institute of the Academy of Sciences of the Kazakh SSR, Almaty, Kazakhstan]. 4:83–93 (In Russian).
   Google Scholar
• Stamatakis A. 2014. RAxML Version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30(9): 1312–1313. [cited 2014 05 01]. Available from: http://bioinformatics.oxfordjournals.org/content/early/2014/01/21/bioin formatics.btu033
   Google Scholar
• Tretter ED, Johnson EM, Benny GL, Lichtwardt RW, Wang Y, Kandel P, Novak SJ, Smith JF, White MM. 2014. An eight-gene molecular phylogeny of the Kickxellomycotina, including the first phylogenetic placement of Asellariales. Mycologia 106:912–935.
   Google Scholar
• Tretter ED, Johnson EM, Wang Y, Kandel P, White MM. 2013. Examining new phylogenetic markers to uncover the evolutionary history of early-diverging fungi: comparing MCM7, TSR1 and rRNA genes for single- and multi-gene analyses of Kickxellomycotina. Persoonia 30:106–125.
   Google Scholar
• van Tieghem P, Le Monnier G. 1873. Recherches sur les Mucorinées. Annales des Sciences Naturelles; Botanique, Série V 17:261–399.
   Google Scholar
• White MM, James TY, O’Donnell K, Cafaro MJ, Tanabe Y, Sugiyama J. 2006. Phylogeny of the Zygomycota based on nuclear ribosomal sequence data. Mycologia 98:872–884.
   PubMed Web of Science ®Google Scholar
• White MM, Lichtwardt RW. 2004. Fungal symbionts (Harpellales) in Norwegian aquatic insect larvae. Mycologia 96:891–910.
   Web of Science ®Google Scholar
• White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR methods and protocols: a guide to methods and applications. New York: Academic Press. p. 315–322.
   Google Scholar
• Young TWK. 1968. Electron microscopic study of asexual spores in Kickxellaceae. New Phytologist 67:823–836.
   Web of Science ®Google Scholar
• Young TWK. 1970. Ultrastructure of the spore wall of Linderina pennispora. Transactions of the British Mycological Society 54:15–25.
   Google Scholar