Vitamin B₂ (riboflavin) increases drought tolerance of Agaricus bisporus

LITERATURE CITED

• Abbas CA, Sibirny AA. 2011. Genetic control of biosynthesis and transport of riboflavin and flavin nucleotides and construction of robust biotechnological producers. Microbiology and Molecular Biology Reviews 75:321–360.
   PubMed Web of Science ®Google Scholar
• Allaman I, Bélanger M, Magistretti PJ. 2015. Methylglyoxal, the dark side of glycolysis. Frontiers in Neuroscience 9:23.
   PubMed Web of Science ®Google Scholar
• Allison SD, Lu Y, Weihe C, Goulden ML, Martiny AC, Treseder KK, Martiny JBH. 2013. Microbial abundance and composition influence litter decomposition response to environmental change. Ecology 94:714–725.
   PubMed Web of Science ®Google Scholar
• Alster CJ, German DP, Lu Y, Allison SD. 2013. Microbial enzymatic responses to drought and to nitrogen addition in a southern California grassland. Soil Biology and Biochemistry 64:68–79.
   Web of Science ®Google Scholar
• Ashoori M, Saedisomeolia A. 2014. Riboflavin (vitamin B2) and oxidative stress: a review. British Journal of Nutrition 111:1985–1991.
   PubMed Web of Science ®Google Scholar
• Baldrian P, Větrovský T, Cajthaml T, Dobiášová P, Petránková M, Šnajdr J, Eichlerová I. 2013. Estimation of fungal biomass in forest litter and soil. Fungal Ecology 6:1–11.
   Web of Science ®Google Scholar
• Beutler E. 1969. Effect of flavin compounds on glutathione reductase activity: in vivo and in vitro studies. Journal of Clinical Investigation 48:1957–1966.
   PubMed Web of Science ®Google Scholar
• Bhavsar RB, Makley LN, Tsonis PA. 2010. The other lives of ribosomal proteins. Human Genomics 4:327.
   PubMedGoogle Scholar
• Boretsky YR, Protchenko OV, Prokopiv TM, Mukalov IO, Fedorovych DV, Sibirny AA. 2007. Mutations and environmental factors affecting regulation of riboflavin synthesis and iron assimilation also cause oxidative stress in the yeast Pichia guilliermondii. Journal of Basic Microbiology 47:371–377.
   PubMed Web of Science ®Google Scholar
• Borken W, Davidson EA, Savage K, Gaudinski J, Trumbore SE. 2003. Drying and wetting effects on carbon dioxide release from organic horizons. Soil Science Society of America Journal 67:1888–1896.
   Web of Science ®Google Scholar
• Burton KS, Smith JF, Wood DA, Thurston CF. 1997. Extracellular proteinases from the mycelium of the cultivated mushroom Agaricus bisporus. Mycological Research 101:1341–1347.
   Web of Science ®Google Scholar
• Cao J, Yan Q. 2012. Histone ubiquitination and deubiquitination in transcription, DNA damage response, and cancer. Frontiers in Oncology 2:26.
   PubMedGoogle Scholar
• Chandrasekharan MB, Huang F, Sun Z-W. 2009. Ubiquitination of histone H2B regulates chromatin dynamics by enhancing nucleosome stability. Proceedings of the National Academy of Sciences of the United States of America 106:16686–16691.
   Google Scholar
• Chang ST, Miles PG. 1986. Mushroom technology. Mushroom Newsletter for the Tropics 6:6–11.
   Google Scholar
• Chavez MM, Pereira JS, Maroco J, Rodrigues ML, Ricardo CP, Osorio ML, Carvalho I, Faria T, Pinheiro C. 2002. How plants cope with water stress in the field? Photosynthesis and growth. Annals of Botany 89:907–916.
   PubMed Web of Science ®Google Scholar
• Chiocchetti AG, Haslinger D, Boesch M, Karl T, Wiemann S, Freitag CM, Poustka F, Scheibe B, Bauer JW, Hintner H, Breitenbach M, Kellermann J, Lottspeich F, Klauck SM, Breitenbach-Koller L. 2014. Protein signatures of oxidative stress response in a patient specific cell line model for autism. Molecular Autism 5:10.
   PubMed Web of Science ®Google Scholar
• Ciechanover A. 2015. The unravelling of the ubiquitin system. Nature Reviews Molecular Cell Biology 16:322–324.
   PubMed Web of Science ®Google Scholar
• Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M. 2005. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21:3674–3676.
   PubMed Web of Science ®Google Scholar
• Cooper RA. 1984. Metabolism of methylglyoxal in microorganisms. Annual Review of Microbiology 38:49–68.
   PubMed Web of Science ®Google Scholar
• Crowther TW, Boddy L, Hefin Jones T. 2012. Functional and ecological consequences of saprotrophic fungus-grazer interactions. The ISME Journal 6:1992–2001.
   PubMed Web of Science ®Google Scholar
• Dawson TE. 1993. Hydraulic lift and water use by plants: implications for water balance, performance and plant-plant interactions. Oecologia 95:565–574.
   PubMed Web of Science ®Google Scholar
• Deng B, Jin X, Yang Y, Lin Z, Zhang Y. 2014. The regulatory role of riboflavin in the drought tolerance of tobacco plants depends on ROS production. Journal of Plant Growth Regulation 72:269–277.
   Web of Science ®Google Scholar
• Di Martino C, Delfine S, Pizzuto R, Loreto F, Fuggi A. 2003. Free amino acids and glycine betaine in leaf osmoregulation of spinach responding to increasing salt stress. New Phytologist 158:455–463.
   PubMed Web of Science ®Google Scholar
• Domec J-C, Warren JM, Meinzer FC, Brooks JR, Coulombe R. 2004. Native root xylem embolism and stomatal closure in stands of Douglas-fir and ponderosa pine: mitigation by hydraulic redistribution. Oecologia 141:7–16.
   PubMed Web of Science ®Google Scholar
• Eden A, Benvenisty N. 1999. Involvement of branched-chain amino acid aminotransferase (Bcat1/Eca39) in apoptosis. FEBS Letters 457:255–261.
   PubMed Web of Science ®Google Scholar
• Fischer M, Bacher A. 2005. Biosynthesis of flavocoenzymes. Natural Product Reports 22:324–350.
   PubMed Web of Science ®Google Scholar
• García-Martínez J, Delgado-Ramos L, Ayala G, Pelechano V, Medina DA, Carrasco F, González R, Andrés-León E, Steinmetz L, Warringer J, Chávez S, Pérez-Ortín JE. 2015. The cellular growth rate controls overall mRNA turnover, and modulates either transcription or degradation rates of particular gene regulons. Nucleic Acids Research 44:3643–3658.
   PubMed Web of Science ®Google Scholar
• Grigoriev IV, Nikitin R, Haridas S, Kuo A, Ohm R, Otillar R, Riley R, Salamov A, Zhao X, Korzeniewski F, Smirnova T, Nordberg H, Dubchak I, Shabalov I. 2014. MycoCosm portal: gearing up for 1000 fungal genomes. Nucleic Acids Research 42:D699–D704.
   PubMed Web of Science ®Google Scholar
• Guhr A, Borken W, Spohn M, Matzner E. 2015. Redistribution of soil water by a saprotrophic fungus enhances carbon mineralization. Proceedings of the National Academy of Sciences of the United States of America 112:14647–14651.
   Google Scholar
• Hakuno F, Hughes DA, Yamamoto M. 1996. The Schizosaccharomyces pombe mra1 gene, which is required for cell growth and mating, can suppress the mating inefficiency caused by a deficit in the Ras1 activity. Genes to Cells 1:303–315.
   PubMed Web of Science ®Google Scholar
• Hättenschwiler S, Tiunov AV, Scheu S. 2005. Biodiversity and litter decomposition in terrestrial ecosystems. Annual Review of Ecology, Evolution, and Systematics 36:191–218.
   Web of Science ®Google Scholar
• Haurwitz B. 1945. Insolation in relation to cloudiness and cloud density. Journal of Meteorology 2:154–166.
   Google Scholar
• Henderson A, Hershey JW. 2011. Eukaryotic translation initiation factor (eIF) 5A stimulates protein synthesis in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences of the United States of America 108:6415–6419.
   Google Scholar
• Hengartner CJ, Thompson CM, Zhang J, Chao DM, Liao SM, Koleske AJ, Okamura S, Young RA. 1995. Association of an activator with an RNA polymerase II holoenzyme. Genes and Development 9:897–910.
   PubMed Web of Science ®Google Scholar
• Herzog C, Peter M, Pritsch K, Günthardt-Goerg MS, Egli S. 2013. Drought and air warming affects abundance and exoenzyme profiles of Cenococcum geophilum associated with Quercus robur, Q. petraea and Q. pubescens. Plant Biology 15:230–237.
   PubMed Web of Science ®Google Scholar
• Hossain MA, Hossain MZ, Fujita M. 2009. Stress-induced changes of methylglyoxal level and glyoxalase I activity in pumpkin seedlings and cDNA cloning of glyoxalase I gene. Australian Journal of Crop Science 3:53–64.
   Web of Science ®Google Scholar
• Hothorn T, Bretz F, Westfall P. 2008. Simultaneous inference in general parametric models. Biometrical Journal 50:346–363.
   PubMed Web of Science ®Google Scholar
• Ingram J, Bartels D. 1996. The molecular basis of dehydration tolerance in plants. Annual Review of Plant Physiology and Plant Molecular Biology 47:377–403.
   PubMed Web of Science ®Google Scholar
• Kim J-M, Sasaki T, Ueda M, Sako K, Seki M. 2015. Chromatin changes in response to drought, salinity, heat, and cold stresses in plants. Frontiers in Plant Science 6:114.
   PubMed Web of Science ®Google Scholar
• Koltun LV, Shavlovskiĭ GM, Kashchenko VE, Trach VM. 1983. Changes in the enzyme activity of flavinogenesis in the process of culturing the fungus Eremothecium ashbyii. Mikrobiologiia 53:43–47.
   Google Scholar
• Kramer ER, Scheuringer N, Podtelejnikov AV, Mann M, Peters J-M. 2000. Mitotic regulation of the APC activator proteins CDC20 and CDH1. Molecular Biology of the Cell 11:1555–1569.
   PubMed Web of Science ®Google Scholar
• Kuo M-H, Allis CD. 1998. Roles of histone acetyltransferases and deacetylases in gene regulation. Bioessays 20:615–626.
   PubMed Web of Science ®Google Scholar
• Lesage G, Bussey H. 2006. Cell wall assembly in Saccharomyces cerevisiae. Microbiology and Molecular Biology Reviews 70:317–343.
   PubMed Web of Science ®Google Scholar
• Li CH, Ohn T, Ivanov P, Tisdale S, Anderson P. 2010. eIF5A promotes translation elongation, polysome disassembly and stress granule assembly. PLoS ONE 5:e9942.
   PubMed Web of Science ®Google Scholar
• Lindström MS. 2009. Emerging functions of ribosomal proteins in gene-specific transcription and translation. Biochemical and Biophysical Research Communications 379:167–170.
   PubMed Web of Science ®Google Scholar
• Magnus G. 1844. Versuche uber die Spannkrafte des Wasserdampfes. Annalen der Physik und Chemie 61:225–248.
   Google Scholar
• Malatrasi M, Corradi M, Svensson JT, Close TJ, Gulli M, Marmiroli N. 2006. A branched-chain amino acid aminotransferase gene isolated from Hordeum vulgare is differentially regulated by drought stress. Theoretical and Applied Genetics 113:965–976.
   PubMed Web of Science ®Google Scholar
• Manzoni S, Schimel JP, Porporato A. 2012. Responses of soil microbial communities to water stress: results from a meta-analysis. Ecology 93:930–938.
   PubMed Web of Science ®Google Scholar
• Martins AMT, Cordeiro CAA, Ponces Freire AMJ. 2001. In situ analysis of methylglyoxal metabolism in Saccharomyces cerevisiae. FEBS Letters 499:41–44.
   PubMed Web of Science ®Google Scholar
• Mello JA, Almouzni G. 2001. The ins and outs of nucleosome assembly. Current Opinion in Genetics and Development 11:136–141.
   PubMed Web of Science ®Google Scholar
• Mittler R. 2002. Oxidative stress, antioxidants and stress tolerance. Trends in Plant Science 7:405–410.
   PubMed Web of Science ®Google Scholar
• Mori T, Sakurai M. 1995. Effects of riboflavin and increased sucrose on anthocyanin production in suspended strawberry cell cultures. Plant Science 110:147–153.
   Web of Science ®Google Scholar
• Morin E, Kohler A, Baker AR, Foulongne-Oriol M, Lombard V, Nagy LG, Ohm RA, Patyshakuliyeva A, Brun A, Aerts AL, Bailey AM, Billette C, Coutinho PM, Deakin G, Doddapaneni H, Floudas D, Grimwood J, Hildén K, Kües U, Labutti KM, Lapidus A, Lindquist EA, Lucas SM, Murat C, Riley RW, Salamov AA, Schmutz J, Subramanian V, Wösten, Han A B, Xu J, Eastwood DC, Foster GD, Sonnenberg, Anton S M, Cullen D, de Vries, Ronald P, Lundell T, Hibbett DS, Henrissat B, Burton KS, Kerrigan RW, Challen MP, Grigoriev IV, Martin F. 2012. Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proceedings of the National Academy of Sciences of the United States of America 109:17501–17506.
   Google Scholar
• Muhr J, Franke J, Borken W. 2010. Drying–rewetting events reduce C and N losses from a Norway spruce forest floor. Soil Biology and Biochemistry 42:1303–1312.
   Web of Science ®Google Scholar
• Oliveros JC. 2015. Venny. An interactive tool for comparing lists with Venn’s diagrams. Venny 2.1. [cited 2016 Apr 12]. Available from: http://bioinfogp.cnb.csic.es/tools/venny
   Google Scholar
• Osakabe Y, Osakabe K, Shinozaki K, Tran L-SP. 2014. Response of plants to water stress. Frontiers in Plant Science 5:86.
   PubMed Web of Science ®Google Scholar
• Park MH, Lee YB, Joe YA. 1997. Hypusine is essential for eukaryotic cell proliferation. Biological Signals 6:115–123.
   PubMedGoogle Scholar
• Pereverzev MO, Vygodina TV, Konstantinov AA, Skulachev VP. 2003. Cytochrome c, an ideal antioxidant. Biochemical Society Transactions 31:1312–1315.
   PubMed Web of Science ®Google Scholar
• Pinheiro J, Bates D, DebRoy S, Sarkar, D. and the R Development Core Team. 2014. nlme: linear and nonlinear mixed effects models. nlme 3.1-117. [cited 2014 Jun 24]. Available from https://cran.r-project.org/web/packages/nlme
   Google Scholar
• Protchenko OV, Boretsky Y, Romanyuk TM, Fedorovych DV. 1999. Oversynthesis of riboflavin by yeast Pichia guilliermondii in response to oxidative stress. Ukrains’ kyi biokhimichnyi zhurnal 72:19–23.
   Google Scholar
• Querejeta JI, Egerton-Warburton LM, Allen MF. 2003. Direct nocturnal water transfer from oaks to their mycorrhizal symbionts during severe soil drying. Oecologia 134:55–65.
   PubMed Web of Science ®Google Scholar
• Richard JP. 1993. Mechanism for the formation of methylglyoxal from triose phosphates. Biochemical Society Transactions 21:549–553.
   PubMed Web of Science ®Google Scholar
• Rochette P, Ellert B, Gregorich EG, Desjardins RL, Pattey E, Lessard R, Johnson BG. 1997. Description of a dynamic closed chamber for measuring soil respiration and its comparison with other techniques. Canadian Journal of Soil Science 77:195–203.
   Web of Science ®Google Scholar
• Sandoval FJ, Zhang Y, Roje S. 2008. Flavin nucleotide metabolism in plants: monofunctional enzymes synthesize fad in plastids. Journal of Biological Chemistry 283:30890–30900.
   PubMed Web of Science ®Google Scholar
• Schimel J, Balser TC, Wallenstein M. 2007. Microbial stress-response physiology and its implications for ecosystem function. Ecology 88:1386–1394.
   PubMed Web of Science ®Google Scholar
• Schlösser T, Wiesenburg A, Gätgens C, Funke A, Viets U, Vijayalakshmi S, Nieland S, Stahmann K-P. 2007. Growth stress triggers riboflavin overproduction in Ashbya gossypii. Applied Microbiology and Biotechnology 76:569–578.
   PubMed Web of Science ®Google Scholar
• Sheik CS, Beasley WH, Elshahed MS, Zhou X, Luo Y, Krumholz LR. 2011. Effect of warming and drought on grassland microbial communities. The ISME Journal 5:1692–1700.
   PubMed Web of Science ®Google Scholar
• Singh BK, Shaner DL. 1995. Biosynthesis of branched chain amino acids: from test tube to field. Plant Cell 7:935–944.
   PubMed Web of Science ®Google Scholar
• Smirnoff N. 1993. The role of active oxygen in the response of plants to water deficit and desiccation. New Phytologist 125:27–58.
   PubMed Web of Science ®Google Scholar
• Smyth GK. 2005. limma: linear models for microarray data. In: Gentleman R, Carey V, Huber W, Irizarry R, Dudoit S, eds. Bioinformatics and computational biology solutions using R and Bioconductor. New York: Springer. p. 397–420.
   Google Scholar
• Synetos D, Dabeva MD, Warner JR. 1992. The yeast ribosomal protein S7 and its genes. Journal of Biological Chemistry 267:3008–3013.
   PubMed Web of Science ®Google Scholar
• Taheri P, Tarighi S. 2010. Riboflavin induces resistance in rice against Rhizoctonia solani via jasmonate-mediated priming of phenylpropanoid pathway. Journal of Plant Physiology 167:201–208.
   PubMed Web of Science ®Google Scholar
• Tarwadi KV, Agte VV. 2011. Effect of micronutrients on methylglyoxal-mediated in vitro glycation of albumin. Biological Trace Element Research 143:717–725.
   PubMed Web of Science ®Google Scholar
• The UniProt Consortium. 2015. UniProt: a hub for protein information. Nucleic Acids Research 43:D204–D212.
   PubMed Web of Science ®Google Scholar
• Thornalley PJ. 2003. Glyoxalase I—structure, function and a critical role in the enzymatic defence against glycation. Biochemical Society Transactions 31:1343–1348.
   PubMed Web of Science ®Google Scholar
• Ventii KH, Wilkinson KD. 2008. Protein partners of deubiquitinating enzymes. Biochemical Journal 414:161–175.
   PubMed Web of Science ®Google Scholar
• Warner JR. 1999. The economics of ribosome biosynthesis in yeast. Trends in Biochemical Sciences 24:437–440.
   PubMed Web of Science ®Google Scholar
• Xue S, Barna M. 2012. Specialized ribosomes: a new frontier in gene regulation and organismal biology. Nature Reviews Molecular Cell Biology 13:355–369.
   PubMed Web of Science ®Google Scholar
• Yang S, Vanderbeld B, Wan J, Huang Y. 2010. Narrowing down the targets: towards successful genetic engineering of drought-tolerant crops. Molecular Plant 3:469–490.
   PubMed Web of Science ®Google Scholar
• Yuste J, Peñuelas J, Estijarte M, Garcia-Mas J, Mattana S, Ogaya R, Pujol M, Sardans J. 2011. Drought-resistant fungi control soil organic matter decomposition and its response to temperature. Global Change Biology 17:1475–1486.
   Web of Science ®Google Scholar
• Zhang Y. 2003. Transcriptional regulation by histone ubiquitination and deubiquitination. Genes and development17:2733–2740.
   Google Scholar