Phylogeny and taxonomy of Podosphaera cerasi, sp. nov., and Podosphaera prunicola sensu lato

LITERATURE CITED

• Abasova LV, Aghayeva DN, Takamatsu S. 2018. Erysiphe azerbaijanica and E. linderae: two new powdery mildew species (Erysiphales) belonging to the Microsphaera lineage of Erysiphe. Mycoscience 59:181–187
   Google Scholar
• Blumer S. 1967. Echte Mehltaupilze (Erysiphaceae), Ein Bestimmungsbuch für die in Europa vorkommenden Arten. Jena, Germany: Fischer Verlag. 436 p.
   Google Scholar
• Braun U, Cook RTA. 2012. The taxonomic manual of the Erysiphales (Powdery mildews). CBS Biodiversity Series No. 11. Utrecht, The Netherlands: Westerdijk Fungal Biodiversity Institute. 707 p.
   Google Scholar
• Braun U, Takamatsu S. 2000. Phylogeny of Erysiphe, Microsphaera, Uncinula (Erysipheae) and Cystotheca, Podosphaera, Sphaerotheca (Cystotheceae) inferred from rDNA ITS sequences—some taxonomic consequences. Schlechtendalia 4:1–33.
   Google Scholar
• Calabro JM, Spotts RA, Grove GG. 2009. Effects of training system, rootstock and cultivar on sweet cherry powdery mildew foliar infections. Hortscience 44:481–482
   Web of Science ®Google Scholar
• Calmin, Belbahri L, Lefort F. 2007. Direct PCR for DNA barcoding in the genera Phytophopthora and Pythium. Biotechnology Biotechnological Equipment 21:40–42.
   Web of Science ®Google Scholar
• Edgar RC. 2004. Muscle: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32:1792–1797.
   PubMed Web of Science ®Google Scholar
• Farr DF, Rossman AY. Fungal databases. U.S. National Fungus Collections, ARS, USDA. [cited 2019 May 9]. Available from: https://nt.ars-grin.gov/fungaldatabases/
   Google Scholar
• Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes—application to the identification of mycorrhizae and rusts. Molecular Ecology 2:113–118, doi:10.1111/j.1365-294X.1993.tb00005.x
   PubMed Web of Science ®Google Scholar
• Ginns JH. 1968. Compendium of plant disease and decay fungi in Canada 1960–1980. Research Branch Agriculture Canada 1813–416.
   Google Scholar
• Grove GG. 1991. Powdery mildew of sweet cherry—influence of temperature and wetness duration on release and germination of ascospores of Podosphaera clandestina. Phytopathology 81:1271–1275.
   Web of Science ®Google Scholar
• Grove GG, Boal RJ. 1991. Overwinter survival of Podosphaera clandestina in Eastern Washington. Phytopathology 81:385–391.
   Google Scholar
• Hamby R, Sims L, Issel L, Zimmer E. 1988. Direct ribosomal RNA sequencing: optimization of extraction and sequencing methods for work with higher plants. Plant Molecular Biology Reporter 6:175–192.
   Google Scholar
• Hirata T, Takamatsu S. 1996. Nucleotide sequence diversity of rDNA internal transcribed spacers extracted from conidia and cleistothecia of several powdery mildew fungi. Mycoscience 37:283–288.
   Google Scholar
• Kishino H, Hasegawa M. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and branching order in Hominoidea. Journal of Molecular Evolution 9:170–179.
   Google Scholar
• Kumar S, Stecher G, Tamura K. 2016. MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Molecular Biology and Evolution 33:1870–1874.
   PubMed Web of Science ®Google Scholar
• Maurizio AM. 1927. Zur Biologie und Systematik der Pomaceen bewohnenden Podosphaeren. Zentralblatt für Bakteriologie, Parasitenkunde und Infektionskrankheiten Abteilung 2 72:129–148
   Google Scholar
• Mori Y, Sato Y, Takamatsu S. 2000. Evolutionary analysis of the powdery mildew fungi (Erysiphales) using nucleotide sequences of the nuclear ribosomal DNA. Mycologia 92:74–93, doi:10.2307/3761452
   Web of Science ®Google Scholar
• Saenz GS, Taylor JW. 1999. Phylogeny of the Erysiphales (powdery mildews) inferred from internal transcribed spacer ribosomal DNA sequences. Canadian Journal of Botany 77:150–168
   Google Scholar
• Shi S, Li J, Sun J, Yu J, Zhou S. 2013. Phylogeny and classification of Prunus sensu lato (Rosaceae). Journal of Integrative Plant Biology 55:1069–1079
   PubMed Web of Science ®Google Scholar
• Shimodaira H, Hasegawa M. 1999. Multiple comparisons of log-likelihood with applications to phylogenetic inference. Molecular Biology and Evolution 16:1114–1116.
   Web of Science ®Google Scholar
• Silvestro D, Michalak I. 2012. RaxmlGUI: a graphical front-end for RAxML. Organisms Diversity & Evolution 12:335–337.
   Web of Science ®Google Scholar
• Swofford DL. 2002. PAUP*: Phylogenetic Analyses Using Parsimony (*and other methods) 4.0b10. Sunderland, Massachusetts: Sinauer Associates.
   Google Scholar
• Takamatsu S, Kano Y. 2001. PCR primers useful for nucleotide sequencing of rDNA of the powdery mildew fungi. Mycoscience 42:135–139, doi:10.1007/BF02463987
   Google Scholar
• Takamatsu S, Matsuda S, Grigaliūnaitė B. 2013. Comprehensive phylogenetic analysis of the genus Golovinomyces (Ascomycota: Erysiphales) reveals close evolutionary relationships with host plants. Mycologia 105:1135–1152.
   PubMed Web of Science ®Google Scholar
• Takamatsu S, Niinomi S, Harada M, Havrylenko M. 2010. Molecular phylogenetic analyses reveal a close evolutionary relationship between Podosphaera (Erysiphales: Erysiphaceae) and its rosaceous hosts. Persoonia 24:38–48, doi:10.3767/003158510X494596
   PubMed Web of Science ®Google Scholar
• Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution 30:2725–2729, doi:10.1093/molbev/mst197
   PubMed Web of Science ®Google Scholar
• [USDA NASS] United States Department of Agriculture National Agricultural Statistics Service. n.d. Statistics by Subject Results. 2018. [ cited 2018 Apr]. Available from: https://www.nass.usda.gov/Statistics_by_Subject/result.php?BD3483E9-91B7-3EC4-9E33-C12833CB949D&sector=CROPS&group=FRUIT %26 TREE NUTS&comm=CHERRIES
   Google Scholar
• Vilgalys R, Hester M. 1990. Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 172:4238–4246.
   PubMed Web of Science ®Google Scholar
• Walsh SP, Metzger DA, Higuchi R. 1991. Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques 10:506–513.
   PubMed Web of Science ®Google Scholar