Molecular insights into fungal diversity reveal three novel species of Leucocoprinus from southern Punjab, Pakistan

LITERATURE CITED

• Ahmad S, Iqbal SH, Khalid AN. 1997. Fungi of Pakistan, 1000 Sultan Ahmad Mycological Society of Pakistan. Punjab University Press: Department of Botany, University of the Punjab, Quaid-e-Azam Campus, Lahore; p. 248.
   Google Scholar
• Amin A, Nasim W, Mubeen M, Sarwar S, Urich P, Ahmad A, Ali QS, Khaliq T, Rasul F, Hammad HM. 2018. Regional climate assessment of precipitation and temperature in Southern Punjab (Pakistan) using SimCLIM climate model for different temporal scales. Theor Appl Climatol. 131(1–2):121–131. doi:10.1007/s00704-016-1960-1.
   Web of Science ®Google Scholar
• Amjad M, Shah H, Bakhsh E 1992. Report on tree growth on farmlands of the Punjab. Peshawar: Forest Economics Branch, Pakistan Forest Institute.
   Google Scholar
• Ashraf S, Naseer A, Usman M, Khalid AN. 2023. Two new species of genus Leucoagaricus (Agaricaceae, Agaricales) from Pakistan. MycoKeys. 96:159–171. doi:10.3897/mycokeys.96.101745.
   PubMedGoogle Scholar
• Asif M, Niazi AR, Izhar A, Khalid AN, Bashir H. 2021. Leucoagaricus fragilis sp. nov.(Agaricaceae) from Punjab, Pakistan. Phytotaxa. 501(1):140–150. doi:10.11646/phytotaxa.501.1.5.
   Web of Science ®Google Scholar
• Baig SA, Akhter NA, Ashfaq M, Asi MR, Ashfaq U. 2012. Imidacloprid residues in vegetables, soil, and water in the southern Punjab, Pakistan. J Agric Technol. 8:903–916.
   Google Scholar
• Bas C. 1969. Morphology and subdivision of Amanita and a monograph of its section Lepidella. Persoonia. 5:285–573.
   Google Scholar
• Berkeley MJ, Broome CE. 1871. The fungi of Ceylon (Hymenomycetes, from Agaricus to Cantharellus). Bot J Linn Soc. 11(56):494–567. doi:10.1111/j.1095-8339.1871.tb00163.x.
   Google Scholar
• Birkebak JM. 2010. The genus Leucocoprinus in western Washington. Mycotaxon. 112(1):83–102. doi:10.5248/112.83.
   Google Scholar
• Bon M. 1977. Les Lépiotes de l’herbier « Boudier » au Muséum national d’Histoire naturelle de Paris. Documents mycologiques. 7(27/28):11–22.
   Google Scholar
• Bon M, Boiffard J. 1974. Lépiotes de Vendée et de la cote Atlantique française. Bulletin de la Société Mycologique de France. 90:287–306.
   Google Scholar
• Chapela IH, Rehner SA, Schultz TR, Mueller UG. 1994. Evolutionary history of the symbiosis between fungus-growing ants and their fungi. Science. 266(5191):1691–1694. doi:10.1126/science.266.5191.1691.
   PubMed Web of Science ®Google Scholar
• Chiu WF. 1948. The Amanitaceae of Yunnan. The Science Reports of National TsingHua University. Series B, Biological Psychol Sci. 3:165–178.
   Google Scholar
• Darriba D, Taboada GL, Doallo R, Posada D. 2012. JModelTest 2: more models, new heuristics, and parallel computing. Nature Meth. 9(8):772. doi:10.1038/nmeth.2109.
   PubMed Web of Science ®Google Scholar
• Dovana F, Contu M, Angeli P, Brandi A, Mucciarelli M. 2017. Leucoagaricus ariminensis sp. nov. a lilac species from Italy. Mycotaxon. 132(1):205–216. doi:10.5248/132.205.
   Web of Science ®Google Scholar
• Dizkirici A, Kalmer A, İsmail ACAR. 2019. Morphologic and molecular diagnosis of some Leucoagaricus species and revealing a new record from Turkey. Mantar Dergisi. 10: 143–150.
   Google Scholar
• Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32(5):1792–1797. doi:10.1093/nar/gkh340.
   PubMed Web of Science ®Google Scholar
• El-Fallal A, El-Sayed AK, El-Gharabawy HM. 2019. Podaxis pistillaris (L.) Fr. and Leucocoprinus birnbaumii (Corda) Singer; new addition to macrofungi of Egypt. Egypt J Bot. 59:413–423.
   Web of Science ®Google Scholar
• Fries EM. 1874. Hymenomycetes europaei sive Epicriseos systematis mycologici. Ed. altera. Ed. Berling: Upsaliae.
   Google Scholar
• Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Mol Ecol. 2(2):113–118. doi:10.1111/j.1365-294X.1993.tb00005.x.
   PubMed Web of Science ®Google Scholar
• Ge ZW. 2010. Leucoagaricus orientiflavus, a new yellow lepiotoid species from southwestern China. Mycotaxon. 111(1):121–126. doi:10.5248/111.121.
   Google Scholar
• Ge ZW, Yang ZL, Qasim T, Nawaz R, Khalid AN, Vellinga EC. 2015. Four new species in Leucoagaricus (Agaricaceae, Basidiomycota) from Asia. Mycologia. 107(5):1033–1044. doi:10.3852/14-351.
   PubMed Web of Science ®Google Scholar
• Guinberteau J, Boisselet P, Dupuy G. 1998. Leucoagaricus idea-fragum, sp. nov. un nouveau Leucoagaricus des dunes atlantiques françaises de coloration rose framboise. Bulletin Trimestriel de la Societé Mycologique de France. 114:1–18.
   Google Scholar
• Heinemann P. 1978. title Bulletin du Jardin botanique National de Belgique/Bulletin van de Nationale Plantentuin van België. 48:399–407.
   Google Scholar
• Huijsman HSC. 1955. A New Species of Leucoagaricus from the Netherlands. Fungus, Wageningen. 25:34.
   Google Scholar
• Hussain S, Jabeen S, Khalid AN, Ahmad H, Afshan NUS, Sher H, Pfister DH. 2018. Underexplored regions of Pakistan yield five new species of Leucoagaricus. Mycologia. 110(2):387–400. doi:10.1080/00275514.2018.1439651.
   PubMed Web of Science ®Google Scholar
• Ijaz H, Mureed M, Yasmeen A, Naseer A, Hussain A, Jabeen S. 2023. Molecular phylogeny and morphological characterization of Leucocoprinus birnbaumii from Punjab, Pakistan. Adv Life Sci. 10:148–151.
   Web of Science ®Google Scholar
• Jabeen S, Waseem B, Hamid M, Yasmeen A, Yasmeen A. 2020. First record of Leucoagaricus nivalis from Pakistan. Bangladesh J Plant Taxon. 27(2):453–459. doi:10.3329/bjpt.v27i2.50684.
   Web of Science ®Google Scholar
• Javaid A, Bajwa R, Anjum TJM. 2004. Tree dieback in Punjab, Pakistan. Mycopath. 2:1–5.
   Google Scholar
• Johnson J. 1999. Phylogenetic relationships within Lepiota sensu lato based on morphological and molecular data. Mycologia. 91(3):443–458. doi:10.1080/00275514.1999.12061038.
   Web of Science ®Google Scholar
• Josserand M. 1974. Une nouvelle espèce de Lepiota rougissante: lepiota jubilaei petite étude du groupe. Travaux Mycologiques didibi R. Kühner. Numéro Special du Bulletin de la Socieété Linneeénne de Lyon. 43:205–216.
   Google Scholar
• Justo A, Angelini C, Bizzi A. 2021. The genera Leucoagaricus and Leucocoprinus in the Dominican Republic. Mycologia. 113(2):348–389. doi:10.1080/00275514.2020.1819142.
   PubMed Web of Science ®Google Scholar
• Khalil H, Ayyub M, Akram A, Thorn G, Niazi AR. 2023. A new species of Leucoagaricus (Agaricaceae, Basidiomycota) from Changa Manga Forest, Pakistan. Phytotaxa. 620(1):87–93. doi:10.11646/phytotaxa.620.1.8.
   Web of Science ®Google Scholar
• Khan Z, Izhar A, Khalid AN. 2023. Leucoagaricus thalensis (Agaricaceae; Basidiomycota), a new species from Punjab, Pakistan. Phytotaxa. 594(3):163–177. doi:10.11646/phytotaxa.594.3.1.
   Web of Science ®Google Scholar
• Kumaresan V, Veeramohan R, Ganesan T. 2011. Diversity of white-spored agarics in Puducherry. J Mycol Plant Pathol. 41:518–523.
   Google Scholar
• Kumar TA, Manimohan P. 2009. The genera Leucoagaricus and Leucocoprinus (Agaricales, Basidiomycota) in Kerala State, India. Mycotaxon. 108(1):385–428. doi:10.5248/108.385.
   Google Scholar
• Latha KD, Raj KA, Manimohan P. 2020. Leucoagaricus callainitinctus—a new species of Leucoagaricus section Piloselli (Agaricaceae) from tropical India. Phytotaxa. 442(2):111–120. doi:10.11646/phytotaxa.442.2.6.
   Web of Science ®Google Scholar
• Liang JF, Yang ZL, Xu J, Ge ZW. 2010. Two new unusual Leucoagaricus species (Agaricaceae) from tropical China with blue-green staining reactions. Mycologia. 102(5):1141‒1152. doi:10.3852/09-021.
   PubMed Web of Science ®Google Scholar
• Loquin M. 1952. Sur la non-validité de quelques genres d’Agaricales”. Bulletin de la Société Mycologique de France. 68:165–169.
   Google Scholar
• Ma Y, Liu T, Yu X, Wei T, Ge ZW. 2022. Six new species of Leucoagaricus (Agaricaceae) from Northeastern China. Diversity. 14(5):314. doi:10.3390/d14050314.
   Google Scholar
• Malysheva EF, Svetasheva TY, Bulakh EM. 2013. Fungi in the Russian Far East. I. Leucoagaricus lateritiopurpureus and new species of Leucoagaricus (Agaricaceae) with reddish brown basidiocarps. Mikol Fitopatol. 47:169–179.
   Google Scholar
• Miller MA, Holder MT, Vos R, Midford PE, Liebowvitz T, Chan L, Hoover P, Warnow T 2010. The CIPRES Portals. Available from: https://www.phylo.org/ accessed 12 April 2023).
   Google Scholar
• Muñoz G, Caballero A, Contu M, Vizzini A. 2012. A new Leucoagaricus species of section Piloselli (Agaricales, Agaricaceae) from Spain. IMA Fungus. 3(2):117–123. doi:10.5598/imafungus.2012.03.02.03.
   PubMed Web of Science ®Google Scholar
• Munsell. 1975. Munsell soil color charts. Macbeth Division of Kollmorgen Corporation. Baltimore (Maryland): U.S. Dept. of Agriculture.
   Google Scholar
• Naseer A, Ali M, Niazi AR, Khalid AN. 2023. Leucoagaricus swaticus from Himalayan temperate forests of Pakistan. Nordic J Bot. 2023(7):e03983. doi:10.1111/njb.03983.
   Web of Science ®Google Scholar
• Orton PD. 1960. New check list of British Agarics and Boleti. Part III. Notes on genera and species in the list. Trans Br Mycol Soc. 43(2):159–439. doi:10.1016/S0007-1536(60)80065-4.
   Google Scholar
• Qasim T, Amir T, Nawaz R, Niazi AR, Khalid AN. 2015. Leucoagaricus lahorensis, a new species of L. sect. Rubrotincti. Rubrotincti. Mycotaxon. 130(2):533–541. doi:10.5248/130.533.
   Web of Science ®Google Scholar
• Rambaut A. 2014. FigTree 1.4. 2 software. Institute of Evolutionary Biology, University of Edinburgh.
   Google Scholar
• Rambaut A, Suchard MA, Xie D, Drummond, AJ. 2014. Tracer v. 1.6. [accessed 2023 Sep 9]. http://beast.bio.ed.ac.uk/Tracer.
   Google Scholar
• Redhead SA. 2023. Nomenclatural novelties. Index Fungorum. 551:1.
   Google Scholar
• Rehman A, Usman M, Afshan NUS, Khalid AN. 2023. Leucoagaricus gujratensis sp. nov. (Agaricaceae, Agaricales) from Pakistan. Phytotaxa. 589(1):39–50. doi:10.11646/phytotaxa.589.1.4.
   Google Scholar
• Reid DA. 1990. The Leucocoprinus badhamii complex in Europe: species which redden on bruising or become green in ammonia fumes. Mycol Res. 94(5):641–670. doi:10.1016/S0953-7562(09)80666-7.
   Google Scholar
• Ronquist F, Teslenko M, Van Der Mark P, Ayres DL, Darling A, Höhna S, Larget B, Liu L, Suchard MA, Huelsenbeck JP. 2012. MrBayes 32: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst Biol. 61(3):539–542. doi:10.1093/sysbio/sys029.
   PubMed Web of Science ®Google Scholar
• Singer R. 1986. The Agaricales in modern taxonomy. 4th ed. Koeltz Scientific Books; 981.
   Google Scholar
• Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics. 30(9):1312–1313. doi:10.1093/bioinformatics/btu033.
   PubMed Web of Science ®Google Scholar
• Ullah Z, Jabeen S, Faisal M, Ahmad H, Khalid AN. 2019. Leucoagaricus brunneus sp. nov. from Khyber Pakhtunkhwa, Pakistan. Mycotaxon. 134(4):601–611. doi:10.5248/134.601.
   Web of Science ®Google Scholar
• Usman M, Khalid AN. 2018. Leucoagaricus pabbiensis sp. nov. from Punjab, Pakistan. Pakistan.Mycotaxon. 133(2):354–363. doi:10.5248/133.355.
   Web of Science ®Google Scholar
• Varga T, Krizsán K, Földi C, Dima B, Sánchez-García M, Sánchez-Ramírez S, Nagy LG, Szarkándi JG, Papp V, Albert L. 2019. Megaphylogeny resolves global patterns of mushroom evolution. Nat Ecol Evol. 3(4):668–678. doi:10.1038/s41559-019-0834-1.
   PubMed Web of Science ®Google Scholar
• Vellinga EC. 2000. Notes on Lepiota and Leucoagaricus. Type studies on Lepiota magnispora, Lepiota barssii, and Agaricus americanus. Mycotaxon. 76:429–438.
   Web of Science ®Google Scholar
• Vellinga EC. 2001b. Notulae ad Floram agaricinam neerlandicam—XXXVIII. Leucoagaricus subgenus Sericeomyces Persoonia. 17:473–480.
   Web of Science ®Google Scholar
• Vellinga EC. 2004. Genera in the family Agaricaceae: evidence from nrITS and nrLSU sequences. Mycol Res. 108(4):354–377. doi:10.1017/S0953756204009700.
   PubMed Web of Science ®Google Scholar
• Vellinga EC, Contu M, Vizzini A. 2010. Leucoagaricus decipiens and La. erythrophaeus, a new species pair in sect. Piloselli. Mycologia. 102(2):447–454. doi:10.3852/09-164.
   PubMed Web of Science ®Google Scholar
• Vellinga EC, de Kok RPJ, Bruns TD. 2003. Phylogeny and taxonomy of Macrolepiota (Agaricaceae). Mycologia. 95(3):442–456. doi:10.1080/15572536.2004.11833089e.
   PubMed Web of Science ®Google Scholar
• Vellinga EC, Kuyper TW, Ammirati J, Desjardin DE, Halling RE, Justo A, Læssœe T, Lebel T, Lodge DJ, Matheny PB, et al. 2015. Six simple guidelines for introducing new genera of fungi. IMA Fungus. 6(2):66–68. doi:10.1007/BF03449356.
   Web of Science ®Google Scholar
• Vellinga EC. 2001a. Leucoagaricus; Leucocoprinus. In: Noordeloos ME, Th W, Kuyper EC, Vellinga AA, editors. Flora Agaricina Neerlandica 5. Rotterdam: Balkema Publishers; p. 76–108.
   Google Scholar
• Vellinga EC, Sysouphanthong P, Hyde KD. 2011. The family Agaricaceae: phylogeneis and two new white-spored genera. Mycologia. 103(3):494–509. doi:10.3852/10-204.
   PubMed Web of Science ®Google Scholar
• Vu D, Groenewald M, De Vries M, Gehrmann T, Stielow B, Eberhardt U, Verkley GJM, Groenewald JZ, Cardinali G, Houbraken J. 2019. Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher taxon delimitation. Stud Mycol. 92(1):135–154. doi:10.1016/j.simyco.2018.05.001.
   PubMed Web of Science ®Google Scholar
• Walther G, Garnica S, Wei M. 2005. The systematic relevance of conidiogenesis modes in the gilled Agaricales. Mycol Res. 109(5):525–544. doi:10.1017/S0953756205002868.
   PubMed Web of Science ®Google Scholar
• White TJ, Bruns T, Lee S, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, editors. PCR protocols: a guide to methods and applications. New York: Academic Press; p. 315–322.
   Google Scholar
• Yang ZL, Ge ZW. 2017. Six new combinations of lepiotaceous fungi from China. Mycosystema. 36:542–551. doi:10.13346/j.mycosystema.160221.
   Google Scholar
• Yoo S, Cho Y, Kim JS, Kim M, Lim YW. 2022. Fourteen unrecorded species of Agaricales Underw. (Agaricomycetes, Basidiomycota) from the Republic of Korea. Mycobiology. 50(4):219–230. doi:10.1080/12298093.2022.2097364.
   PubMed Web of Science ®Google Scholar
• Yu F, Liang JF, Ge ZW, Li YK. 2016. Morphological and molecular evidence for a new species of Leucoagaricus from China. Sydowia. 68:41–47.
   Web of Science ®Google Scholar
• Zhao RL, Karunarathna SC, Raspe O, Parra LA, Guinberteau J, Moinard M, Kesel AD, Barroso R, Courtecuisse R, Hyde KD, et al. 2011. Major clades in tropical Agaricus. Fungal Divers. 51:279–296. doi:10.1007/s13225-011-0136-7
   Google Scholar