1,264
Views
9
CrossRef citations to date
0
Altmetric
Articles

Phylogenetic relationships and species delimitation of New Zealand bluebells (Wahlenbergia, Campanulaceae) based on analyses of AFLP data

, &
Pages 365-378 | Received 29 Sep 2011, Accepted 27 Apr 2012, Published online: 21 Sep 2012

References

  • Broadhurst , LM , Young , AG and Murray , BG . 2008 . AFLPs reveal an absence of geographical genetic structure among remnant populations of pohutukawa (Metrosideros excelsa, Myrtaceae) . New Zealand Journal of Botany , 46 : 13 – 21 .
  • de Lange , PJ and Cameron , EK . 1999 . The vascular flora of Aorangi Island, Poor Knights Islands, northern New Zealand . New Zealand Journal of Botany , 37 : 433 – 468 .
  • de Queiroz , K . 2007 . Species concepts and species delimitation . Systematic Biology , 56 : 879 – 886 .
  • Després , L , Gielly , L , Redoutet , W and Taberlet , P . 2003 . Using AFLP to resolve phylogenetic relationships in a morphologically diversified plant species complex when nuclear and chloroplast sequences fail to reveal variability . Molecular Phylogenetics and Evolution , 27 : 185 – 196 .
  • Doyle , JJ and Doyle , JL . 1990 . Isolation of plant DNA from fresh tissue . Focus , 12 : 13 – 15 .
  • García-Pereira , MJ , Caballero , A and Quesada , H . 2010 . Evaluating the relationship between evolutionary divergence and phylogenetic accuracy in AFLP data sets . Molecular Biology and Evolution , 27 : 988 – 1000 .
  • Holland , B , Clarke , AC and Meudt , HM . 2008 . Optimizing automated AFLP scoring parameters to improve phylogenetic resolution . Systematic Biology , 57 : 347 – 366 .
  • Ishida , TA , Hattori , K , Sato , H and Kimura , MT . 2003 . Differentiation and hybridization between Quercus crispula and Q. dentata (Fagaceae): insights from morphological traits, amplified fragment length polymorphism markers, and leafminer composition . American Journal of Botany , 90 : 769 – 776 .
  • Koopman , WJM . 2005 . Phylogenetic signal in AFLP data sets . Systematic Biology , 54 : 197 – 217 .
  • Koopman , WJM , Wissemann , V , De Cock , K , Van Huylenbroeck , J , De Riek , J , Sabatlno , GJH , Visser , D , Vosman , B , Ritz , CM , Maes , B , Werlemark , G , Nybom , H , Debener , T , Linde , M and Smulders , MJM . 2008 . AFLP markers as a tool to reconstruct complex relationships: a case study in Rosa (Rosaceae) . American Journal of Botany , 95 : 353 – 366 .
  • Lockhart , PJ , McLenachan , PA , Havell , D , Glenny , D , Huson , D and Jensen , U . 2001 . Phylogeny, radiation, and transoceanic dispersal of New Zealand alpine buttercups: molecular evidence under split decomposition . Annals of the Missouri Botanical Garden , 88 : 458 – 477 .
  • Luo , RY , Hipp , AL and Larget , B . 2007 . A Bayesian model of AFLP marker evolution and phylogenetic inference . Statistical Applications in Genetics and Molecular Biology , 6 : 1 – 32 .
  • Mayden , RL . 1997 . “ A hierarchy of species concepts: the denouement in the saga of the species problem ” . In Species: The units of biodiversity , Edited by: Claridge , MF , Dawah , HA and Wilson , MR . 381 – 424 . London : Chapman and Hall .
  • Meudt , HM . 2011 . AFLP data reveal a history of auto- and allopolyploidy in New Zealand endemic species of Plantago (Plantaginaceae): new perspectives on a taxonomically challenging group . International Journal of Plant Sciences , 172 : 220 – 237 .
  • Meudt , HM and Bayly , MJ . 2008 . Phylogeographic patterns in the Australasian genus Chionohebe (Veronica s.l., Plantaginaceae) based on AFLP and chloroplast DNA sequences . Molecular Phylogenetics and Evolution , 47 : 319 – 338 .
  • Meudt , HM and Clarke , AC . 2007 . Almost forgotten or latest practice? AFLP applications, analyses and advances . Trends in Plant Science , 12 : 106 – 117 .
  • Meudt , HM , Lockhart , PJ and Bryant , D . 2009 . Species delimitation and phylogeny of a New Zealand plant species radiation . BMC Evolutionary Biology , 9 : 111
  • Meudt , HM and Simpson , BB . 2006 . The biogeography of the austral, subalpine genus Ourisia (Plantaginaceae) based on molecular phylogenetic evidence: South American origin and dispersal to New Zealand and Tasmania . Biological Journal of the Linnean Society , 87 : 479 – 513 .
  • Mitchell , AD and Heenan , PB . 2002 . Sophora sect. Edwardsia (Fabaceae): further evidence from nrDNA sequence data of a recent and rapid radiation around the southern oceans . Botanical Journal of the Linnean Society , 140 : 435 – 441 .
  • Mueller , UG and Wolfenbarger , LL . 1999 . AFLP genotyping and fingerprinting . Trends in Ecology & Evolution , 14 : 389 – 394 .
  • Perrie , LR , Brownsey , PJ , Lockhart , PJ , Brown , EA and Large , MF . 2003 . Biogeography of temperate Australasian Polystichum ferns as inferred from chloroplast sequence and AFLP . Journal of Biogeography , 30 : 1729 – 1736 .
  • Perrie , LR and Shepherd , LD . 2009 . Reconstructing the species phylogeny of Pseudopanax (Araliaceae), a genus of hybridising trees . Molecular Phylogenetics and Evolution , 52 : 774 – 783 .
  • Petterson , JA . 1997a . Revision of the genus Wahlenbergia (Campanulaceae) in New Zealand . New Zealand Journal of Botany , 35 : 9 – 54 .
  • Petterson , JA . 1997b . Identity of the original Wahlenbergia gracilis (Campanulaceae) and allied species. An historical review of early collections . New Zealand Journal of Botany , 35 ( 1 ) : 55 – 78 .
  • Petterson , JA , Williams , EG and Dawson , MI . 1995 . Contributions to a chromosome atlas of the New Zealand flora—34. Wahlenbergia (Campanulaceae) . New Zealand Journal of Botany , 33 : 489 – 496 .
  • Plunkett , GT , Bruhl , JJ and Telford , IRH . 2009 . Two new, sympatric species of Wahlenbergia (Campanulaceae) from the New England Tableland escarpment, New South Wales, Australia . Australian Systematic Botany , 22 : 319 – 331 .
  • Prebble JM 2010 . The evolution of Wahlenbergia (Campanulaceae) in Australasia. Unpublished Masters thesis . Victoria University of Wellington , New Zealand . http://researcharchive.vuw.ac.nz//handle/10063/1338 (accessed 3 August 2012).
  • Prebble , JM , Cupido , CN , Meudt , HM and Garnock-Jones , PJ . 2011 . First phylogenetic and biogeographical study of the southern bluebells (Wahlenbergia, Campanulaceae) . Molecular Phylogenetics and Evolution , 59 : 636 – 648 .
  • Prebble , JM , Meudt , HM and Garnock-Jones , PJ. 2012 . An expanded molecular phylogeny of the southern bluebells (Wahlenbergia, Campanulaceae) from Australia and New Zealand . Australian Systematic Botany , 25 : 11 – 30 .
  • Rambaut A , Drummond AJ 2007 . Tracer v1.4 . http://beast.bio.ed.ac.uk/Tracer (accessed 3 August 2012).
  • Raven , PH . 1973 . Evolution of the subalpine and alpine plant groups in New Zealand . New Zealand Journal of Botany , 11 : 177 – 200 .
  • Reeves , PA and Richards , CM . 2009 . Accurate inference of subtle population structure (and other genetic discontinuities) using principal coordinates . PLoS ONE , 4 : e4269
  • Rohlf FJ 1990 . NTSYS-pc: numerical taxonomy and multivariate analysis system . Applied Biostatistics , Setauket , NY .
  • Ronquist , F and Huelsenbeck , JP . 2003 . MRBAYES 3: Bayesian phylogenetic inference under mixed models . Bioinformatics , 19 : 1572 – 1574 .
  • Shaffer , H and Thomson , R . 2007 . Delimiting species in recent radiations . Systematic Biology , 56 : 896 – 906 .
  • Smissen , R and Breitwieser , I . 2008 . Species relationships and genetic variation in the New Zealand endemic Leucogenes (Asteraceae: Gnaphalieae) . New Zealand Journal of Botany , 46 : 65 – 76 .
  • Smith , PJ . 1992 . A revision of the genus Wahlenbergia (Campanulaceae) in Australia . Telopea , 5 : 91 – 175 .
  • Swofford DL 2002 . PAUP* . Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4 . Sinauer Associates , Sunderland , MA .
  • Tay , ML , Meudt , HM , Garnock-Jones , PJ and Ritchie , PA . 2010 . DNA sequences from three genomes reveal multiple long-distance dispersals and nonmonophyly of sections in Australasian Plantago (Plantaginaceae) . Australian Systematic Botany , 23 : 47 – 68 .
  • Vos , P , Hogers , R , Bleeker , M , Reijans , M , Vandelee , T , Hornes , M , Frijters , A , Pot , J , Peleman , J , Kuiper , M and Zabeau , M . 1995 . AFLP—a new technique for DNA-fingerprinting . Nucleic Acids Research , 23 : 4407 – 4414 .
  • Wagstaff , SJ , Bayly , MJ and Garnock-Jones , PJ . 2002 . Classification, origin, and diversification of the New Zealand hebes (Scrophulariaceae) . Annals of the Missouri Botanical Garden , 89 : 38 – 63 .
  • Wagstaff , SJ and Garnock-Jones , PJ . 1998 . Evolution and biogeography of the Hebe complex (Scrophulariaceae) inferred from ITS sequences . New Zealand Journal of Botany , 36 : 425 – 437 .
  • Webb , CJ and Simpson , MJA . 2001 . Seeds of New Zealand gymnosperms and dicotyledons , 154 – 156 . Christchurch : Manuka Press .
  • Winkworth , RC , Grau , J , Robertson , A and Lockhart , PJ . 2002 . The origins and evolution of the genus Myosotis L. (Boraginaceae) . Molecular Phylogenetics and Evolution , 24 : 180 – 193 .
  • Winkworth , RC , Robertson , AW and Ehrendorfer , F . 1999 . The importance of dispersal and recent speciation in the flora of New Zealand . Journal of Biogeography , 26 : 1323 – 1325 .
  • Winkworth , RC , Wagstaff , SJ and Glenny , D . 2005 . Evolution of the New Zealand mountain flora: origins, diversification and dispersal . Organisms Diversity & Evolution. , 5 : 237 – 247 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.