Application of tyramide signal amplification-fluorescence in situ hybridisation and flow cytometry to detection of Heterosigma akashiwo (Raphidophyceae) in natural waters

References

• Asai , R , Ootani , K , Nomura , Y , Nakamura , C , Ikebukuro , K , Arikawa , Y , Miyake , J and Karube , I . 2003 . PCR-based ribosomal DNA detection technique for microalga (Heterosigma carterae) causing red tide and its application to a biosensor using labeled probe . Marine Biotechnology , 5 : 417 – 423 .
   Web of Science ®Google Scholar
• Akase , SI , Yoshikawa , T , Hayakawa , N , Maeda , H and Sakata , T . 2004 . Molecular identification of red tide-causing microalga Heterosigma akashiwo strains based on their chloroplast DNA sequences . Fisheries Science , 70 : 1043 – 1050 .
   Web of Science ®Google Scholar
• Bearon , RN , Grunbaum , D and Cattolico , RA . 2006 . Effects of salinity structure on swimming behavior and harmful algal bloom formation in Heterosigma akashiwo, a toxic raphidophyte . Marine Ecology Progress Series , 306 : 153 – 163 .
   Web of Science ®Google Scholar
• Biegala , IC , Not , F , Vaulot , D and Simon , N . 2003 . Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification-fluorescence in situ hybridization and flow cytometry . Applied and Environmental Microbiology , 69 : 5519 – 5529 .
   PubMed Web of Science ®Google Scholar
• Binder , B . 2000 . Cell cycle regulation and the timing of chromosome replication in a marine Synechococcus (cyanobacteria) during light- and nitrogen-limited growth . Journal of Phycology , 36 : 120 – 126 .
   Web of Science ®Google Scholar
• Binder , BJ and Chisholm , SW . 1995 . Cell cycle regulation in marine Synechococcus sp. strains . Applied and Environmental Microbiology , 61 : 708 – 717 .
   PubMed Web of Science ®Google Scholar
• Bruyant , F , Babin , M , Genty , B , Prasil , O , Behrenfeld , MJ , Claustre , H , Bricaud , A , Garczarek , L , Holtzendorff , J , Koblizek , M , Dousova , H and Partensky , F . 2005 . Diel variations in the photosynthetic parameters of Prochlorococcus strain PCC9511: combined effects of light and cell cycle . Limnology and Oceanography , 50 : 850 – 863 .
   Web of Science ®Google Scholar
• Campbell , L and Carpenter , EJ . 1986 . Diel patterns of cell division in marine Synechococcus spp. (Cyanobacteria): use of the frequency of dividing cells technique to measure growth rate . Marine Ecology Progress Series , 32 : 139 – 148 .
   Web of Science ®Google Scholar
• Chang , FH , Anderson , C and Bousted , NC . 1990 . First record of a Heterosigma (Raphidophyceae) bloom with associated mortality of cage-reared salmon in Big Glory Bay, New Zealand . New Zealand Journal of Marine and Freshwater Research , 24 : 461 – 469 .
   Web of Science ®Google Scholar
• Chang , J and Carpenter , EJ . 1991 . Species-specific phytoplankton growth rates via diel DNA synthesis cycles. V. Application to natural populations in Long Island Sound . Marine Ecology Progress Series , 78 : 115 – 122 .
   Web of Science ®Google Scholar
• Chen , GF , Wang , GC , Zhang , CY , Zhang , BY , Wang , XK and Zhou , BC . 2008 . Development of rRNA and rDNA-targeted probe for fluorescence in situ hybridization to detect Heterosigma akashiwo (Raphidophycea) . Journal of Experimental Marine Biology and Ecology , 355 : 66 – 75 .
   Web of Science ®Google Scholar
• Chisholm , SW . 1995 . Cell cycle regulation in marine Synechococcus sp. strains . Applied and Environmental Microbiology , 61 : 708 – 717 .
   Web of Science ®Google Scholar
• Collier , JL . 2000 . Flow cytometry and the single cell in phycology . Journal of Phycology , 36 : 628 – 644 .
   PubMed Web of Science ®Google Scholar
• Collier , JL and Campbell , L . 1999 . Flow cytometry in molecular aquatic ecology . Hydrobiologia , 401 : 33 – 53 .
   Web of Science ®Google Scholar
• Giovannoni , SJ , DeLong , EF , Olsen , GJ and Pace , NR . 1988 . Phylogenetic group-specific oligodeoxynucleotide probes for identification of single microbial cells . Journal of Bacteriology , 170 : 720 – 726 .
   PubMed Web of Science ®Google Scholar
• Han , MS and Furuya , K . 2000 . Size and species-specific primary productivity and community structure of phytoplankton in Tokyo Bay . Journal of Plankton Research , 22 : 1221 – 1235 .
   Web of Science ®Google Scholar
• Han , MS , Furuya , K and Nemoto , T . 1992 . Species-specific productivity of Skeletonema costatum (Bacillariophyceae) in the inner part of Tokyo Bay . Marine Ecology Progress Series , 79 : 267 – 273 .
   Web of Science ®Google Scholar
• Hard , JJ , Connell , L , Hershberger , WK and Harrell , LW . 2000 . Genetic variation in mortality of chinook salmon during a bloom of the marine alga Heterosigma akashiwo . Journal of Fish Biology , 56 : 1387 – 1397 .
   Web of Science ®Google Scholar
• Honjo , T . 1993 . “ Overview on bloom dynamics and physiological ecology of Heterosigma akashiwo ” . In Toxic phytoplankton blooms in the sea , Edited by: Smayda , TJ and Shimizu , Y . 33 – 41 . Elsevier : New York .
   Google Scholar
• Honjo , T and Tabata , K . 1985 . Growth dynamics of Olisthodiscus luteus in outdoor tanks with flowing coastal water and in small vessels . Limnology and Oceanography , 30 : 653 – 664 .
   Web of Science ®Google Scholar
• Hugenholtz , P , Tyson , GW and Blackall , LL . 2001 . Design and evaluation of 16S rRNA-targeted oligonucleotide probes for fluorescence in situ hybridization . Methods in Molecular Biology , 176 : 29 – 41 .
   Google Scholar
• Jacquet , S , Partensky , F , Lennon , JF and Vaulot , D . 2001 . Diel patterns of growth and division in marine picoplankton in culture . Journal of Phycology , 37 : 357 – 369 .
   Web of Science ®Google Scholar
• Jacquet , S , Partensky , F , Marie , D , Casotti , R and Vaulot , D . 2001 . Cell cycle regulation by light in Prochlorococcus strains . Applied Environmental Microbiology , 67 : 782 – 790 .
   PubMed Web of Science ®Google Scholar
• Khan , S , Arakawa , O and Onoue , Y . 1997 . Neurotoxins in a toxic red tide of Heterosigma akashiwo (Raphidophyceae) in Kagoshima Bay, Japan . Aquaculture Research , 28 : 9 – 14 .
   Web of Science ®Google Scholar
• Lange , M , Guillou , L , Vaulot , D , Simon , N , Amann , R , Ludwig , W and Medlin , LK . 1996 . Identification of the class Prymnesiophyceae and the genus Phaeocystis with ribsomal RNA-targeted nucleic acid probes 1 detected by flow cytometery . Journal of Phycology , 32 : 858 – 868 .
   Web of Science ®Google Scholar
• McDuff , RE and Chisholm , SW . 1982 . The calculation of in situ growth rates of phytoplankton populations from fractions of cells undergoing mitosis: a clarification . Limnology and Oceanography , 27 : 783 – 788 .
   Web of Science ®Google Scholar
• Miller , PE and Scholin , CA . 1998 . Identification and enumeration of cultured and wild Pseudo-nitzschia (Bacillariophyceae) using species-specific LSU rRNA-targeted fluorescent probes and filter-based whole cell hybridization . Journal of Phycology , 34 : 371 – 382 .
   Web of Science ®Google Scholar
• Not , F , Simon , N , Biegala , IC and Vaulot , D . 2002 . Application of fluorescent in situ hybridization coupled with tyramide signal amplification (FISH-TSA) to assess eukaryotic picoplankton composition . Aquatic Microbial Ecology , 28 : 157 – 166 .
   Web of Science ®Google Scholar
• Pan Y , Cembella AD 1997 . Flow cytometric determination of cell cycles and growth rates of Prorocentrum spp . In: Reguera B , Blanco J , Fernandez M , Wyatt T . Proceedings of the VIII international conference on Harmful Algae, Vigo, Spain, 25–29 June 1997 . Xanta de Galicia and Intergovermental Oceanographic Commission of UNESCO . Pp. 173 – 176 .
   Google Scholar
• Parsons , ML , Scholin , CA , Miller , PE , Doucette , GJ , Powell , CL , Fryxell , GA , Dortch , Q and Soniat , TM . 1999 . Pseudo-nitzchia species (Bacillariophyceae) in Louisiana coastal waters: molecular probe field trials, genetic variability, and domoic acid analysis . Journal of Phycology , 35 : 1368 – 1378 .
   Web of Science ®Google Scholar
• Peperzak L , Sandee B , Jonker R , Legrand C 1997 . Measurement of Prorocentrum micans growth rate by flow cytometric analysis of the diel DNA cycle . In: Reguera B , Blanco J , Fernandez M , Wyatt T . Proceedings of the VIII international conference on Harmful Algae, Vigo, Spain, 25–29 June 1997 . Xanta de Galicia and Intergovermental Oceanographic Commission of UNESCO . Pp. 177 – 178 .
   Google Scholar
• Pernthaler , A , Pernthaler , J and Amann , R . 2002 . Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria . Applied and Environmental Microbiology , 68 : 3094 – 3101 .
   PubMed Web of Science ®Google Scholar
• Przysiezniak , J and Spencer , AN . 1989 . Primary culture of identified neurons from a cnidarians . Journal of Experimental Biology , 142 : 97 – 113 .
   Web of Science ®Google Scholar
• Reguera , B , Garces , E , Pazos , Y , Bravo , I , Ramilo , I and González-Gil , S . 2003 . Cell cycle patterns and estimates of in situ division rates of dinoflagellates of the genus Dinophysis by a postmitotic index . Marine Ecology Progress Series , 249 : 117 – 131 .
   Web of Science ®Google Scholar
• Rhodes , LL , Haywood , AJ , Ballantine , WJ and MacKenzie , AL . 1993 . Algal blooms and climate anomalies in north-east New Zealand, August–December 1992 . New Zealand Journal of Marine and Freshwater Research , 27 : 419 – 430 .
   Web of Science ®Google Scholar
• Rivkin , RB and Seliger , HH . 1981 . Liquid scintillation counting for C uptake of single algal cells isolated from natural samples . Limnology and Oceanography , 26 : 780 – 785 .
   Web of Science ®Google Scholar
• Tiffany , M , Barlow , S , Matey , V and Hurlbert , S . 2001 . Chattonella marina (Raphidophyceae), a potentially toxic alga in the Salton Sea, California . Hydrobiology , 466 : 187 – 194 .
   Web of Science ®Google Scholar
• Tyrrell , JV , Bergquist , PR , Bergquist , PL and Scholin , CA . 2001 . Detection and enumeration of Heterosigma akashiwo and Fibrocapsa japnoca (Raphidophyceae) using rRNA-targeted oligonucleotide probes . Phycologia , 40 : 457 – 467 .
   Web of Science ®Google Scholar
• Tyrrell , JV , Connell , LB and Scholin , CA . 2002 . Monitoring for Heterosigma akashiwo using a sandwich hybridization assay . Harmful Algae , 1 : 205 – 214 .
   Google Scholar
• Wallner , G , Amann , R and Beisker , W . 1993 . Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms . Cytometry , 14 : 136 – 143 .
   PubMedGoogle Scholar
• Yang , H , Wanner , IB , Roper , SD and Chaudhari , N . 1999 . An optimized method for in situ hybridization with signal amplification that allows the detection of rare mRNAs . Journal of Histochemistry and Cytochemistry , 47 : 431 – 445 .
   PubMed Web of Science ®Google Scholar