Reviewing the far-reaching ecological impacts of human-induced terrigenous sedimentation on shallow marine ecosystems in a northern-New Zealand embayment

References

• Adkins SC, Marsden ID, Pirker JG. 2014. Variation in population structure and density of Austrovenus stutchburyi (Veneridae) from Canterbury, New Zealand. Journal of Shellfish Research. 33:343–354. doi: 10.2983/035.033.0204
   Web of Science ®Google Scholar
• Adkins SC, Marsden ID, Pirker JG. 2016. Reproduction, growth and size of a burrowing intertidal clam exposed to varying environmental conditions in estuaries. Invertebrate Reproduction & Development. 60:223–237. doi: 10.1080/07924259.2016.1198833
   Web of Science ®Google Scholar
• Anderson A, Binney J, Harris A. 2014. Tangata Whenua. An illustrated history. Wellington: Bridget Williams Books.
   Google Scholar
• Anderson MJ. 2008. Animal-sediment relationships re-visited: Characterising species’ distributions along an environmental gradient using canonical analysis and quantile regression splines. Journal of Experimental Marine Biology and Ecology. 366:16–27. doi: 10.1016/j.jembe.2008.07.006
   Web of Science ®Google Scholar
• Babirat C, Mouritsen KN, Poulin R. 2004. Equal partnership: two trematode species, not one, manipulate the burrowing behaviour of the New Zealand cockle, Austrovenus stutchburyi. Journal of Helminthology. 78:195–199. doi: 10.1079/JOH2003231
   PubMed Web of Science ®Google Scholar
• Balke T, Bouma TJ, Horstman EM, Webb EL, Erftemeijer PLA, Herman PMJ. 2011. Windows of opportunity: thresholds to mangrove seedling establishment on tidal flats. Marine Ecology Progress Series. 440:1–9. doi: 10.3354/meps09364
   Web of Science ®Google Scholar
• Ballantine B. 2014. Fifty years on: Lessons from marine reserves in New Zealand and principles for a worldwide network. Biological Conservation. 176:297–307. doi: 10.1016/j.biocon.2014.01.014
   Web of Science ®Google Scholar
• Bamford N. 2016. Coastal Sediment Monitoring Programme Whāngārei Harbour and Bay of Islands. 2016 results. Northland Regional Council. https://www.nrc.govt.nz/media/11213/boiandwhangareisedimentreport2016final.pdf.
   Google Scholar
• Berkenbusch K, Neubauer P. 2015. Intertidal shellfish monitoring in the northern North Island region, 2014–15. New Zealand Fisheries Assessment Report 2015/59.
   Google Scholar
• Berkenbusch K, Neubauer P. 2016. Intertidal shellfish monitoring in the northern North Island region, 2016–17. New Zealand Fisheries Assessment Report 2017/51.
   Google Scholar
• Best E. 1929. Fishing methods and devices of the Maori. Dominion Museum Bulletin No. 12.
   Google Scholar
• Booth JD. 1972. Studies on New Zealand bivalve larvae, with observations on the adults and on the hydrology of Bay of Islands and Wellington Harbour. Unpublished PhD thesis in Zoology, Victoria University of Wellington.
   Google Scholar
• Booth JD. 2016. Ecological consequences of pre-Contact harvesting of Bay of Islands fish and shellfish, and other marine taxa, based on midden evidence. Journal of Pacific Archaeology. 7:73–86.
   Web of Science ®Google Scholar
• Booth JD. 2017. Characterising fisheries and other marine harvesting in the Bay of Islands, with ecological consequences, from first human settlement to the present. New Zealand Aquatic Environment and Biodiversity Report No. 186.
   Google Scholar
• Booth JD. 2019. Recent (post-1930) changes in the extent of subtidal seagrass (Zostera muelleri) beds of the eastern Bay of Islands, New Zealand. New Zealand Journal of Marine and Freshwater Research. 53:113–127. doi: 10.1080/00288330.2018.1513409
   Web of Science ®Google Scholar
• Challis AJ. 1994. Edmonds Ruins, Kerikeri Inlet, Bay of Islands: the stone structures and the artefact assemblage. Science & Research Series No. 68.
   Google Scholar
• Chapman VJ. 1978. Mangroves and salt marshes of the Whangaroa and Whangaruru Harbours, and the Bay of Islands. Department of Lands and Survey Auckland.
   Google Scholar
• Cornelisen C, Jiang W, Griffiths R. 2011. Interpreting Northland’s coastal water quality monitoring results under different tide conditions. Cawthron Institute Report No. 2026.
   Google Scholar
• Coutts PJF. 1974. Growth characteristics of the bivalve Chione stutchburyi. New Zealand Journal of Marine and Freshwater Research. 8:333–339. doi: 10.1080/00288330.1974.9515508
   Google Scholar
• Cummings V, Hatton S. 2003. Towards the long term enhancement of shellfish beds in the Whangarei Harbour. Part One: Identifying suitable habitat and methodologies for reseeding. NIWA Client Report HAM2003-042.
   Google Scholar
• Dobbinson SJ, Barker MF, Jillett JB. 1989. Experimental shore level transplantation of the New Zealand cockle Chione stutchburyi. Journal of Shellfish Research. 8:197–212.
   Google Scholar
• Elliot MB, Striewski B, Flenley JR, Kirkman JH, Sutton DG. 1997. A 4300 year palynological and sedimentological record of environmental change and human impact from Wharau Road Swamp, Northland, New Zealand. Journal of the Royal Society of New Zealand. 27:401–418. doi: 10.1080/03014223.1997.9517545
   Web of Science ®Google Scholar
• Ferrar HT, Cropp WH. 1922. Geological map of Whakarara and Kerikeri Survey Districts. Whangarei Central Library.
   Google Scholar
• Froude VA. 2016. Kelp cover and urchin barrens in the Bay of Islands: a 2016 baseline. A report prepared for the Bay of Islands Maritime Park Fish Forever Working Group. Russell, Pacific Eco-Logic Ltd. https://www.fishforever.org.nz/.
   Google Scholar
• Gray JS. 1997. Marine biodiversity: patterns, threats and conservation needs. Biodiversity and Conservation. 6:153–175. doi: 10.1023/A:1018335901847
   Web of Science ®Google Scholar
• Griffiths R. 2011. Kerikeri Inlet estuary monitoring programme. Results from 2008-2010. Whangarei: Northland Regional Council.
   Google Scholar
• Griffiths R. 2013. Waitangi estuary Monitoring Programme 2013. Whangarei: Northland Regional Council.
   Google Scholar
• Griffiths R. 2014. Coastal sediment monitoring programme. Whangarei Harbour and Bay of Islands 2014 results. Whangarei: Northland Regional Council.
   Google Scholar
• Griffiths R. 2015. Coastal water quality monitoring: 2010-2014 results. Whangarei: Northland Regional Council.
   Google Scholar
• Guo X, Ford SE. 2016. Infectious diseases of marine molluscs and host responses as revealed by genomic tools. Philosophical Transactions of the Royal Society B. 371:1–16. doi: 10.1098/rstb.2015.0206
   Web of Science ®Google Scholar
• Gutiérrez JL J, Strayer DL CG, Iribarne OO. 2003. Mollusks as ecosystem engineers: the role of shell production in aquatic habitats. Oikos. 101:79–90. doi: 10.1034/j.1600-0706.2003.12322.x
   Web of Science ®Google Scholar
• Hackwell KR. 1989. New Zealand mangroves. State-of-the-art report. Wellington: Nature Conservation Council.
   Google Scholar
• Harvell CD, et al. 1999. Emerging marine diseases: climate links and anthropogenic factors. Science. 285:1505–1510. doi: 10.1126/science.285.5433.1505
   PubMed Web of Science ®Google Scholar
• Hewitt J, Chiaroni L, Hailes S. 2010. Bay of Islands OS20/20 survey report. Chapter 11: Soft-sediment habitats and communities. http://www.os2020.org.nz/.
   Google Scholar
• Jones HFE, Pilditch CA, Hamilton DP, Bryan KR. 2017. Impacts of a bivalve mass mortality event on an estuarine food web and bivalve grazing pressure. New Zealand Journal of Marine and Freshwater Research. 51:370–392. doi: 10.1080/00288330.2016.1245200
   Web of Science ®Google Scholar
• Klein ES, Thurstan RH. 2016. Acknowledging long-term ecological change: the problem of shifting baselines. Perspectives on Oceans Past. DOI: 10.1007/978-94-017-7496-3_2.
   Google Scholar
• Larcombe MF. 1971. The ecology, population dynamics, and energetics of some soft shore molluscs [Unpubl. PhD thesis in Zoology], University of Auckland.
   Google Scholar
• Lohrer AM, Thrush SF, Hewitt JE, Berkenbusch K, Ahrens M, Cummings VJ. 2004. Terrestrially derived sediment: response of marine macrobenthic communities to thin terrigenous deposits. Marine Ecology Progress Series. 273:121–138. doi: 10.3354/meps273121
   Web of Science ®Google Scholar
• Lohrer AM, Thrush SF, Lundquist CJ, Vopel K, Hewitt JE, Nicholls PE. 2006. Deposition of terrigenous sediment on subtidal marine macrobenthos: response of two contrasting community types. Marine Ecology Progress Series. 307:115–125. doi: 10.3354/meps307115
   Web of Science ®Google Scholar
• Lovelock CE, Feller IC, Ellis J, Schwarz AM, Hancock N, Nichols P, Sorrell B. 2007. Mangrove growth in New Zealand estuaries: the role of nutrient enrichment at sites with contrasting rates of sedimentation. Oecologia. 153:633–641. doi: 10.1007/s00442-007-0750-y
   PubMed Web of Science ®Google Scholar
• MacDiarmid A, et al. 2009. Ocean Survey 20/20. Bay of Islands Coastal Project. Phase 1 – Desk top study. NIWA Project LIN09302.
   Google Scholar
• MacDiarmid AB, et al. 2016. Taking Stock – the changes to New Zealand marine ecosystems since first human settlement: synthesis of major findings, and policy and management implications. New Zealand Aquatic Environment and Biodiversity Report No. 170.
   Google Scholar
• Manez KS, Holm P, Blight L, Coll M, MacDiarmid A, Ojaveer H, Poulsen B, Tull M. 2014. The future of the oceans past: towards a global marine historical research initiative. PLOS ONE. 9(7):1–10.
   Web of Science ®Google Scholar
• Marsden ID. 2004. Effects of reduced salinity and seston availability on growth of the New Zealand little-neck clam Austrovenus stutchburyi. Marine Ecology Progress Series. 266:157–171. doi: 10.3354/meps266157
   Web of Science ®Google Scholar
• Marsden ID, Adkins SC. 2010. Current status of cockle bed restoration in New Zealand. Aquaculture International. 18:83–97. doi: 10.1007/s10499-009-9270-6
   Web of Science ®Google Scholar
• Morrison MA, Jones E, Consalvey M, Berkenbusch K. 2014. Linking marine fisheries species to biogenic habitats in New Zealand: a review and synthesis of knowledge. New Zealand Aquatic Environment and Biodiversity Report 130.
   Google Scholar
• Morrison MA, Lowe ML, Parsons DM, Usmar NR, McLeod IM. 2009. A review of land-based effects on coastal fisheries and supporting biodiversity in New Zealand. New Zealand Aquatic Environment and Biodiversity Report No. 37.
   Google Scholar
• Morton J, Miller M. 1968. The New Zealand sea shore. Collins Auckland.
   Google Scholar
• MPI (Ministry for Primary Industries). 2018. Fisheries Assessment Plenary May 2018: Stock Assessments and Stock Status. https://www.mpi.govt.nz.
   Google Scholar
• NAR (Northern Archaeological Research). 2004. Archaeological survey and assessment of the proposed Lombardy Lane Ltd. Subdivision, Inlet Road, Kerikeri. Heritage New Zealand, Kerikeri.
   Google Scholar
• Norkko A, Thrush SF, Hewitt JE, Cummings VJ, Norkko J, Ellis JI, Funnell GA, Schultz D, MacDonald I. 2002. Smothering of estuarine sandflats by terrigenous clay: the role of wind-wave disturbance and bioturbation in site-dependent macrofaunal recovery. Marine Ecology Progress Series. 234:23–42. doi: 10.3354/meps234023
   Web of Science ®Google Scholar
• Norkko J, Hewitt JE, Thrush SF. 2006. Effects of increased sedimentation on the physiology of two estuarine soft-sediment bivalves, Austrovenus stutchburyi and Paphies australis. Journal of Experimental Marine Biology and Ecology. 333:12–26. doi: 10.1016/j.jembe.2005.11.015
   Web of Science ®Google Scholar
• Oldman JW, Black KP, Swales A, Stroud MJ. 2009. Prediction of annual average sedimentation rates in an estuary using numerical models with verification against core data – Mahurangi estuary, New Zealand. Estuarine, Coastal and Shelf Science. 84:483–492. doi: 10.1016/j.ecss.2009.05.032
   Web of Science ®Google Scholar
• Pawley MDM, Smith ANH. 2014. The distribution and abundance of pipis and cockles in the Northland, Auckland and Bay of Plenty regions, 2013. New Zealand Fisheries Assessment Report 2014/29.
   Google Scholar
• Robinson J, Blanchard A, Clendon M, Maxwell J, Sutton N, Walter R. 2019. Mangahawea Bay revisited: a reconsideration of the stratigraphy and chronology of site Q05/682. Journal of Pacific Archaeology. 10:45–55.
   Web of Science ®Google Scholar
• Saintilan N, Wilson NC, Rogers K, Rajkaran A, Krauss KW. 2014. Mangrove expansion and salt marsh decline at mangrove poleward limits. Global Change Biology. 20:147–157. doi: 10.1111/gcb.12341
   PubMed Web of Science ®Google Scholar
• Selkoe KA, Blenckner T, Caldwell MR, Crowder LB, Erickson AL, Essington TE, Estes JA, Fujita RM, Halpern BS, Hunsicker ME. 2015. Principles for managing marine ecosystems prone to tipping points. Ecosystem Health and Sustainability. 1:1–18. doi: 10.1890/EHS14-0024.1
   Google Scholar
• Sissons J, Wi Hongi W, Hohepa P. 2001. Ngā pūriri o Taiamai. Reed Auckland.
   Google Scholar
• Smith I. 2013. Pre-European Maori exploitation of marine resources in two New Zealand case study areas: species range and temporal change. Journal of the Royal Society of New Zealand. 43:1–37. doi: 10.1080/03036758.2011.574709
   Web of Science ®Google Scholar
• Snelgrove PVR. 1999. Getting to the bottom of marine biodiversity: sedimentary habitats. BioScience. 49:129–138. doi: 10.2307/1313538
   Web of Science ®Google Scholar
• Stephenson RL, Chanley PE. 1979. Larval development of the cockle Chione stutchburyi (Bivalvia: Veneridae) reared in the laboratory. New Zealand Journal of Zoology. 6:553–559. doi: 10.1080/03014223.1979.10428397
   Web of Science ®Google Scholar
• Studer A, Widmann M, Poulin R, Krkošek M. 2013. Large scale patterns of trematode parasitism in a bivalve host: no evidence for a latitudinal gradient in infection levels. Marine Ecology Progress Series. 491:125–135. doi: 10.3354/meps10483
   Web of Science ®Google Scholar
• Swales A, Bentley Sr SJ, Lovelock CE. 2015. Mangrove-forest evolution in a sediment-rich estuarine ecosystem: opportunists or agents of geomorphic change? Earth Surface Processes and Landforms. 40:1672–1687. doi: 10.1002/esp.3759
   Web of Science ®Google Scholar
• Swales A, et al. 2012. Sediment sources and accumulation rates in the Bay of Islands and implications for macro-benthic fauna, mangrove and saltmarsh habitats. Report prepared for Northland Regional Council.
   Google Scholar
• Thrush SF, et al. 2004. Muddy waters: elevating sediment input to coastal and estuarine habitats. Frontiers in Ecology and the Environment. 2:299–306. doi: 10.1890/1540-9295(2004)002[0299:MWESIT]2.0.CO;2
   Web of Science ®Google Scholar
• Turner M. 2006. Accidental discovery of koiwi, Waikino Inlet, Bay of Islands. Archaeological assessment and research strategy. Kerikeri: Heritage New Zealand.
   Google Scholar
• Walls K. 1987. Estuarine and coastal freshwater wetlands of the Bay of Islands. Whangarei: Northland Harbour Board.
   Google Scholar
• Wilmshurst JM. 1997. The impact of human settlement on vegetation and soil stability in Hawke's Bay, New Zealand. New Zealand Journal of Botany. 35:97–111.
   Google Scholar
• Wiser SK, et al. 2013. New Zealand’s naturally uncommon ecosystems. In: Dymond JR, editor. Ecosystem services in New Zealand – conditions and trends. Lincoln, New Zealand: Manaaki Whenua Press; p. 49–61.
   Google Scholar