Community structure of eukaryotes in rice roots estimated by PCR-DGGE pattern and sequence analyses

References

• Armstrong , W . 1967 . The use of polarography in the assay of oxygen diffusing from roots in anaerobic media . Physiol. Plant. , 20 : 540 – 553 .
   Web of Science ®Google Scholar
• Armstrong , W . 1971 . Radial oxygen losses from intact rice roots as affected by distance from the apex, respiration and waterlogging . Physiol. Plant. , 25 : 192 – 197 .
   Web of Science ®Google Scholar
• Bruehl , GW . 1987 . “ Soilborne viruses ” . In Soilborne Plant Pathogens , 254 – 276 . New York : Macmillan Publishing Company .
   Google Scholar
• Ikenaga , M , Muraoka , Y , Toyota , K and Kimura , M . 2002 . Community structure of the microbiota associated with nodal roots of rice plants along with the growth stages: Estimation by PCR-RFLP analysis . Biol. Fertil. Soils , 36 : 397 – 404 .
   Web of Science ®Google Scholar
• Ikenaga , M , Asakawa , S , Muraoka , Y and Kimura , M . 2003a . Bacterial communities associated with nodal roots of rice plants along with the growth stages: Estimation by PCR-DGGE and sequence analyses . Soil Sci. Plant Nutr. , 49 : 591 – 602 .
   Web of Science ®Google Scholar
• Ikenaga , M , Asakawa , S , Muraoka , M and Kimura , M . 2003b . Phylogenetic study on CTO primer-amplified ammonia-oxidizing bacteria and \gB-Proteobacteria associated with rice roots grown in a flooded paddy soil . Soil Sci. Plant Nutr. , 49 : 719 – 727 .
   Web of Science ®Google Scholar
• Jung , T and Blaschke , H . 1996 . Phytophtora root rot in declining forest trees . Phyton , 36 : 95 – 102 .
   Web of Science ®Google Scholar
• Kawata , S , Ishihara , K and Iizuka , H . 1964 . Several microorganisms on or in rice roots . J. Sci. Soil Manure, Jpn. , 51 : 85 – 89 .
   Google Scholar
• Kimura , M , Wada , H and Takai , Y . 1980 . Studies on the rhizosphere of paddy rice (Part 7). The microorganisms in the root surface of paddy rice (I) . J. Sci. Soil Manure, Jpn. , 51 : 85 – 89 .
   Google Scholar
• Kimura , M . 1949 . Investigation on the rhizosphere of rice seedling. Part 1. On the microscopic structure of the rhizosphere and oxidative power of root . J. Sci. Soil Manure. Jpn. , 19 : 119 – 124 .
   Google Scholar
• Miyashita , K , Wada , H and Takai , Y . 1977 . Decomposition process of the intact roots of rice plant (part 2). Invasion of soil microorganisms . J. Sci. Soil Manure. Jpn. , 48 : 558 – 563 .
   Google Scholar
• Miyashita , K , Wada , H and Takai , Y . 1982 . Measurement of microbial number and biomass in rice roots . J. Sci. Soil Manure, Jpn. , 53 : 39 – 44 .
   Google Scholar
• Muraoka , Y , Hamakawa , E , Toyota , K and Kimura , M . 2000 . Observation of microbial colonization on the surface of rice roots along with their development and degradation . Soil Sci. Plant Nutr. , 46 : 491 – 502 .
   Web of Science ®Google Scholar
• Roger , PA and Kurihara , Y . 1991 . “ The floodwater biology of tropical wetland rice fields. In Soil management for sustainable rice production in the tropics ” . In International Board for Soil Research and Management. Monograph No.2 Edited by: Panichapong , S and Wada , H . 211 – 233 .
   Google Scholar
• Stanier , RY , Ingraham , JL , Wheelis , ML and Painter , PR . 2001 . “ Protozoa ” . In The Microbial World , fifth edition , 195 – 213 . Tokyo : Baihuukan .
   Google Scholar
• Takahashi , T . 2000 . “ Soil protozoa ” . In New Soil Microorganisms (VII), Ecology of Protozoa and Algac in Soil , Edited by: Hattori , T . 5 – 54 . Tokyo : Hakuyuusha .
   Google Scholar
• Takahashi , T and Suhama , M . 1991 . Ciliated protozoan fauna in paddy field . Bulletin Jpn. Sci. Microb. Ecol. , 6 : 103 – 115 .
   Google Scholar
• Themann , K , Werres , S , Luttmann , R and Diener , HA . 2002 . Observation of Phytophthora spp. in water recirculation system in commercial hardy ornamental nursery stock . Eur. J. Plant Pathology , 108 : 337 – 343 .
   Web of Science ®Google Scholar
• Utagawa , S , Tsubaki , K , Horie , Y , Miuya , H , Minoura , K , Yamazaki , M , Yokoyama , T and Watanabe , S . 1978 . “ Aquatic fungi ” . In An Illustrated Book of Fungi (1st vol) , Edited by: Koudansha Scientific . 46 – 51 . Tokyo : Koudansha .
   Google Scholar
• van Hannen , EJ , van Agterveld , MP , Gons , HJ and Laanbroek , HJ . 1998 . Revealing genetic diversity of eukaryotic microorganism in aquatic environments by denaturing gradient gel electrophoresis. . J. Phycol. , 34 : 206 – 213 .
   Web of Science ®Google Scholar
• Watanabe , T . 1993 . “ Comment on soil fungi ” . In Photomicrographs and Illustrations of Soil Fungi , 1 – 9 . Tokyo : Soft Science .
   Google Scholar
• Yang , CH and Crowley , DE . 2000 . Rhizosphere microbial community structure in relation to root location and plant iron nutritional status . Appl. Environ. Microbiol. , 66 : 345 – 351 .
   PubMed Web of Science ®Google Scholar
• Zwall , KB , Kuikman , PJ and van Veen , JA . 1994 . “ Rhizosphere protozoa: Their significance in nutrient dynamics ” . In Soil Protozoa. , Edited by: Darbyshire , JF . 93 – 121 . Aberdeen , , United Kingdom : Cab International .
   Google Scholar