Computing in Bioinformatics and Engaged Student Learning: Student Perspectives on Anticipatory Activities and Innovative Apps

References

• American Association for the Advancement of Science (AAAS). (2011). Vision and change in undergraduate biology education: A call to action. AAAS. https://visionandchange.org/wp-content/uploads/2013/11/aaas-VISchange-web1113.pdf
   Google Scholar
• Attwood, T. K., Blackford, S., Brazas, M. D., Davies, A., & Schneider, M. V. (2019). A global perspective on evolving bioinformatics and data science training needs. Briefings in Bioinformatics, 20(2), 398–404. https://doi.org/10.1093/bib/bbx100
   PubMed Web of Science ®Google Scholar
• Bagozzi, R. P. (2007). The legacy of the technology acceptance model and a proposal for a paradigm shift. Journal of the Association for Information Systems, 8(4), 244–254. https://doi.org/10.17705/1jais.00122
   Web of Science ®Google Scholar
• Braun, V., & Clarke, V. (2012). Thematic analysis. In H. Cooper, P. M. Camic, D. L. Long, A. T. Panter, D. Rindskopf, & K. J. Sher (Eds.), APA handbook of research methods in psychology, vol 2: Research designs: Quantitative, qualitative, neuropsychological, and biological (pp. 57–71). American Psychological Association. https://doi.org/10.1037/13620-004
   Google Scholar
• Brown, J. S., Collins, A., & Duguid, P (1989). Situated cognition and the culture of learning. Educational Researcher, 18(1), 32–42. https://doi.org/10.3102/0013189X018001032
   Google Scholar
• Carter, L. (2007). Why students with an apparent aptitude for computer science don’t choose to major in computer science. Proceedings of the Thirty-Seventh SIGCSE Technical Symposium on Computer Science Education Bulletin, 58(1), 27–31. https://doi.org/10.1145/1124706.1121352
   Google Scholar
• Eagan, M. K. (2016). Becoming more student-centered? An examination of faculty teaching practices across STEM and non-STEM disciplines between 2004 and 2014. Higher Education Research Institute, University of California, Los Angeles.
   Google Scholar
• Freeman, S., Eddy, S. L., McDonough, M., Smith, M. K., Okoroafor, N., Jordt, H., & Wenderoth, M. P. (2014). Active learning increases student performance in science, engineering, and mathematics. Proceedings of the National Academy of Sciences, 111 (23), 8410–8415. https://doi.org/10.1073/pnas.1319030111
   PubMed Web of Science ®Google Scholar
• Goldberg, M. F. (1990). Portrait of Madeline Hunter. Educational Leadership, 47(5), 141–143.
   Web of Science ®Google Scholar
• Hunter, M. (1994). Mastery teaching: Increasing instructional effectiveness in elementary and secondary schools, colleges, and universities. Corwin Press.
   Google Scholar
• Jungck, J. R., Donovan, S. S., Weisstein, A. E., Khiripet, N., & Everse, S. J. (2010). Bioinformatics education dissemination with an evolutionary problem solving perspective. Briefings in Bioinformatics, 11(6), 570–581. https://doi.org/10.1093/bib/bbq028
   PubMed Web of Science ®Google Scholar
• Khatri, R., Henderson, C., Cole, R., Froyd, J. E., Friedrichsen, D., & Stanford, C. (2017). Characteristics of well-propagated teaching innovations in undergraduate STEM. International Journal of STEM Education, 4(1), Article 2. https://doi.org/10.1186/s40594-017-0056-5
   Google Scholar
• Madlung, A. (2018). Assessing an effective undergraduate module teaching applied bioinformatics to biology students. PLOS Computational Biology, 14(1), el005872. https://doi.org/10.1371/journal.pcbi.l005872
   Web of Science ®Google Scholar
• Mardis, E. R. (2008). The impact of next-generation sequencing technology on genetics. Trends in Genetics, 24(3), 133–141. https://doi.org/10.1016/j.tig.2007.12.007
   PubMed Web of Science ®Google Scholar
• Master, A., Cheryan, S., & Meltzoff, A. N. (2016). Computing whether she belongs: Stereotypes undermine girls’ interest and sense of belonging in computer science. Journal of Educational Psychology, 108(3), 424–437. https://doi.org/10.1037/edu0000061
   Web of Science ®Google Scholar
• National Research Council. (2003). BIO2010: Transforming undergraduate education for future research biologists. The National Academies Press.
   Google Scholar
• Osbome, J. (2014). Teaching scientific practices: Meeting the challenge of change. Journal of Science Teacher Education, 25(2), 177–196. https://doi.org/10.1007/s10972-014-9384-1
   Google Scholar
• Porter, S. G., & Smith, T. M. (2019). Bioinformatics for the masses: The need for practical data science in undergraduate biology. Omics: A Journal of Integrative Biology, 23(6), 297–299. https://doi.org/10.1089/omi.2019.0080
   PubMed Web of Science ®Google Scholar
• President’s Council of Advisors on Science and Technology. (2012). Engage to excel: Producing one million additional college graduates with degrees in science, technology, engineering, and mathematics. U.S. Office of Science and Technology Policy. https://bit.ly/3D0390b
   Google Scholar
• Robbins, J. (2005). “Brown paper packages”? A sociocultural perspective on young children’s ideas in science. Research in Science Education, 35(2-3), 151–172. https://doi.org/10.1007/s11165-005-0092-x
   Web of Science ®Google Scholar
• Scholz, M. B., Lo, C., & Chain, P. S. G. (2012). Next generation sequencing and bioinformatic bottlenecks: The current state of metagenomic data analysis. Current Opinion in Biotechnology, 23(1), 9–15. https://doi.org/10.1016/j.copbio.2011.11.013
   PubMed Web of Science ®Google Scholar
• Snyder, T. D., de Brey, C., & Dillow, S. A. (2016). Digest of education statistics 2015 (51st ed.). National Center for Education Statistics. https://nces.ed.gov/pubs2016/2016014.pdf
   Google Scholar
• Stains, M., Harshman, J., Barker, M. K., Chasteen, S. V., Cole, R., DeChenne-Peters, S. E., Eagan Jr., M. K., Esson, J. M., Knight, J. K., Laski, F. A., Levis-Fitzgerald, M., Lee, C. J., Lo, S. M., McDonnell, L. M., McDonnell, McKay, T. A., Michelotti, N., Musgrove, A., Palmer, M. S., … Young, A. M. (2018). Anatomy of STEM teaching in North American universities. Science, 359(6383), 1468–1470. https://doi.org/10.1126/science.aap8892
   PubMed Web of Science ®Google Scholar
• Theobald, E. J., Hill, M. J., Tran, E., Agrawal, S., Arroyo, E. N., Behling, S., Chambwe, N., Cintrón, D. L., Cooper, J. D., Dunster, G., Grummer, J. A., Hennessey, K., Hsiao, J., Iranon, N., Jones II, L., Jordt, H., Keller, M., Lacey, M. E., Littlefield, C. E., … Freeman, S. A. (2020). Active learning narrows achievement gaps for underrepresented students in undergraduate science, technology, engineering, and math. Proceedings of the National Academy of Sciences, 117(12), 6476–6483. https://doi.org/10.1073/pnas.1916903117
   PubMed Web of Science ®Google Scholar
• Thoman, D. B., Arizaga, J. A., Smith, J. L., Story, T. S., & Soncuya, G. (2014). The grass is greener in non-science, technology, engineering, and math classes: Examining the role of competing belonging to undergraduate women’s vulnerability to being pulled away from science. Psychology of Women Quarterly, 38(2), 246–258. https://doi.org/10.1177/0361684313499899
   Web of Science ®Google Scholar
• Wilkinson, S. (1998). Focus group methodology: A review. International Journal of Social Research Methodology, 1(3), 181–203. https://doi.org/10.1080/13645579.1998.10846874
   Google Scholar
• Williams, J. J., Drew, J. C., GalindoGonzalez, S., Robic, S., Dinsdale, E., Morgan, W. R., Triplett, E. W., Burnette III, J. M., Donovan, S. S., Fowlks, E. R., Goodman, A. L., Grandgenett, N. F., Goller, C. C., Hauser, C., Jungck, J. R., Newman, J. D., Pearson, W. R., Ryder, E. F., Sier, M., … Pauley, M. A. (2019). Barriers to integration of bioinformatics into undergraduate life sciences education: A national study of US life sciences faculty uncovers significant barriers to integrating bioinformatics into undergraduate instruction. PLOS ONE, 14(11), 1–19. https://doi.org/10.1371/journal.pone.0224288
   Web of Science ®Google Scholar
• Wilson Sayres, M. A., Hauser, C., Sierk, M., Robic, S., Rosenwald, A. G., Smith, T. M., Triplett, E. W., Williams, J. J., Dinsdale, E., Morgan, W. R., Burnette III, J. M., Donovan, S. S., Drew, J. C., Elgin, S. C. R., Fowlks, E. R., Galindo-Gonzalez, S., Goodman, A. L., Grandgenett, N. F., Goller, C. C., … Pauley, M. A. (2018). Bioinformatics core competencies for undergraduate life sciences education. PLOS ONE, 13(6), e0196878. https://doi.org/10.1371/journal.pone.0196878
   PubMed Web of Science ®Google Scholar