Spectral reflectance of coral reef benthos and substrate assemblages on Heron Reef, Australia

References

• Ahmad, W. and Neil, D.T., 1994, An evaluation of Landsat-Thematic-Mapper (Tm) digital data for discriminating coral-reef zonation – Heron-Reef (GBR). International Journal of Remote Sensing, 15, pp. 2583–2597.
   Web of Science ®Google Scholar
• Andrefouet, S., 2008, Coral reef habitat mapping using remote sensing: a user vs producer perspective. Implications for research, management and capacity building. Journal of Spatial Science, 53, pp. 113–129.
   Web of Science ®Google Scholar
• Andrefouet, S., Hochberg, E.J., Payri, C., Atkinson, M.J., Muller-Karger, F.E. and Ripley, H., 2003a, Multi-scale remote sensing of microbial mats in an atoll environment. International Journal of Remote Sensing, 24, pp. 2661–2682.
   Web of Science ®Google Scholar
• Andrefouet, S., Kramer, P., Torres-Pulliza, D., Joyce, K.E., Hochberg, E.J., Garza-Perez, R., Mumby, P.J., Riegl, B., Yamano, H., White, W.H., Zubia, M., Brock, J.C., Phinn, S.R., Naseer, A., Hatcher, B.G. and Muller-Karger, F.E., 2003b, Multi-site evaluation of IKONOS data for classification of tropical coral reef environments. Remote Sensing of Environment, 88, pp. 128–143.
   Web of Science ®Google Scholar
• Andrefouet, S., Muller-Karger, F., Hochberg, E.J., Hu, C. and Carder, K.L., 2001, Change detection in shallow coral reef environments using Landsat 7 ETM+ data. Remote Sensing of Environment, 79, pp. 150–162.
   Web of Science ®Google Scholar
• Andrefouet, S., Payri, C., Hochberg, E.J., Hu, C., Atkinson, M.J. and Muller-Karger, F.E., 2004, Use of in-situ and airborne reflectance for scaling up spectral discrimination of coral reef macroalgae from species to communities. Marine Ecology Progress Series, 283, pp. 161–177.
   Web of Science ®Google Scholar
• Andrefouet, S. and Roux, L., 1998, Characterisation of ecotones using membership degrees computed with a fuzzy classifier. International Journal of Remote Sensing, 19, pp. 3205–3211.
   Web of Science ®Google Scholar
• Austin, R.W. and Halikas, G., 1976, The Index of Refraction of Seawater, p. 121 (La Jolla, CA: Scripps Institution of Oceanography).
   Google Scholar
• Benfield, S.L., Guzman, H.M., Mair, J.M. and Young, J.A.T., 2007, Mapping the distribution of coral reefs and associated sublittoral habitats in Pacific Panama: a comparison of optical satellite sensors and classification methodologies. International Journal of Remote Sensing, 28, pp. 5047–5070.
   Web of Science ®Google Scholar
• Capolsini, P., Andrefouet, S., Rion, C. and Payri, C., 2003, A comparison of Landsat ETM+, SPOT HRV, Ikonos, ASTER, and airborne MASTER data for coral reef habitat mapping in south pacific islands. Canadian Journal of Remote Sensing, 29, pp. 187–200.
   Web of Science ®Google Scholar
• Clark, C.D., Mumby, P.J., Chisholm, J.R.M., Jaubert, J. and Andréfouët, S., 2000, Spectral discrimination of coral mortality states following a severe bleaching event. International Journal of Remote Sensing, 21, pp. 2321–2327.
   Web of Science ®Google Scholar
• Congalton, R.G., 1991, A review of assessing the accuracy of classifications of remotely sensed data. Remote Sensing of Environment, 37, pp. 35–46.
   Web of Science ®Google Scholar
• Dekker, A.G., Wettle, M. and Brando, V.E., 2005, Coral reef habitat mapping using MERIS: can MERIS detect coral bleaching? In Proceedings of the MERIS (A)ATSR Workshop 2005 (ESA SP-597), H. Lacoste (Ed.) (Frascati: ESRIN). Published on CDROM.
   Google Scholar
• Demetriades-Shah, T.H., Steven, M.D. and Clark, J.A., 1990, High resolution derivative spectra in remote sensing. Remote Sensing of Environment, 33, pp. 55–64.
   Web of Science ®Google Scholar
• Enriquez, S., Mendez, E.R. and Iglesias-Prieto, R., 2005, Multiple scattering on coral skeletons enhances light absorption by symbiotic algae. Limnology and Oceanography, 50, pp. 1025–1032.
   Web of Science ®Google Scholar
• Goodman, J.A. and Ustin, S.L., 2007, Classification of benthic composition in a coral reef environment using spectral unmixing. Journal of Applied Remote Sensing, 1, 011501, doi:10.1117/1.2815907.
   Google Scholar
• Green, E.P., Mumby, P.J., Edwards, A.J. and Clark, C.D., 1996, A review of remote sensing for the assessment and management of tropical coastal resources. Coastal Management, 24, pp. 1–40.
   Web of Science ®Google Scholar
• Green, E.P., Mumby, P.J., Edwards, A.J. and Clark, C.D., 2000, Remote Sensing Handbook for Tropical Coastal Management (Paris: UNESCO).
   Google Scholar
• Hedley, J.D. and Mumby, P.J., 2002, Biological and remote sensing perspectives of pigmentation in coral reef organisms. Advances in Marine Biology, 43, pp. 277–317.
   PubMed Web of Science ®Google Scholar
• Hedley, J.D., Mumby, P.J., Joyce, K.E. and Phinn, S.R., 2004, Spectral unmixing of coral reef benthos under ideal conditions. Coral Reefs, 23, pp. 60–73.
   Web of Science ®Google Scholar
• Hedley, J.D., Roelfsema, C. and Phinn, S.R., 2009, Efficient radiative transfer model inversion for remote sensing applications. Remote Sensing of Environment, 113, pp. 2527–2532.
   Web of Science ®Google Scholar
• Hochberg, E.J. and Atkinson, M.J., 2000, Spectral discrimination of coral reef benthic communities. Coral Reefs, 19, pp. 164–171.
   Web of Science ®Google Scholar
• Hochberg, E.J. and Atkinson, M.J., 2003, Capabilities of remote sensors to classify coral, algae, and sand as pure and mixed spectra. Remote Sensing of Environment, 85, pp. 174–189.
   Web of Science ®Google Scholar
• Hochberg, E.J., Atkinson, M.J. and Andrefouet, S., 2003, Spectral reflectance of coral reef bottom-types worldwide and implications for coral reef remote sensing. Remote Sensing of Environment, 85, pp. 159–173.
   Web of Science ®Google Scholar
• Hochberg, E.J., Atkinson, M.J., Apprill, A. and Andrefouet, S., 2004, Spectral reflectance of coral. Coral Reefs, 23, pp. 84–95.
   Web of Science ®Google Scholar
• Holden, H. and LeDrew, E., 1998, Spectral discrimination of healthy and non-healthy corals based on cluster analysis, principal components analysis, and derivative spectroscopy. Remote Sensing of Environment, 65, pp. 217–224.
   Web of Science ®Google Scholar
• Holden, H. and LeDrew, E., 1999, Hyperspectral identification of coral reef features. International Journal of Remote Sensing, 20, pp. 2545–2563.
   Web of Science ®Google Scholar
• Jell, J.S. and Flood, P.G., 1978, Guide to the geology of reefs of the Capricorn and Bunker Groups, Great Barrier Reef Province with special reference to the Heron Reef. Papers, Department of Geology, University of Queensland, 8, pp. 1–85.
   Google Scholar
• Joyce, K.E., 2005, A method for mapping live coral cover using remote sensing. PhD thesis, Biophysical Remote Sensing Group, School of Geography, Planning and Architecture, The University of Queensland, p. 140.
   Google Scholar
• Joyce, K.E. and Phinn, S.R., 2002, Bi-directional reflectance of corals. International Journal of Remote Sensing, 23, pp. 389–394.
   Web of Science ®Google Scholar
• Joyce, K.E. and Phinn, S.R., 2003, Hyperspectral analysis of chlorophyll content and photosynthetic capacity of coral reef substrates. Limnology and Oceanography, 48, pp. 489–496.
   Web of Science ®Google Scholar
• Joyce, K.E., Phinn, S.R., Roelfsema, C.M., Neil, D.T. and Dennison, W.C., 2004, Combining Landsat ETM plus and Reef Check classifications for mapping coral reefs: a critical assessment from the southern Great Barrier Reef, Australia. Coral Reefs, 23, pp. 21–25.
   Web of Science ®Google Scholar
• Jupp, D.L.B., Mayo, K., Kuchler, D.A., VanClaasen, D., Kenchington, R.A. and Guerin, P.R., 1985, Remote sensing for planning and managing the Great Barrier Reef of Australia. Photogrammetria, 40, pp. 21–42.
   Google Scholar
• Karpouzli, E., Malthus, T.J. and Place, C.J., 2004, Hyperspectral discrimination of coral reef benthic communities in the western Caribbean. Coral Reefs, 23, pp. 141–151.
   Web of Science ®Google Scholar
• Kohler, K.E. and Gill, S.M., 2006, Coral Point Count with Excel extensions (CPCe): a Visual Basic program for the determination of coral and substrate coverage using random point count methodology. Computers & Geosciences, 32, pp. 1259–1269.
   Web of Science ®Google Scholar
• Kutser, T., Dekker, A.G. and Skirving, W., 2003, Modeling spectral discrimination of Great Barrier Reef benthic communities by remote sensing instruments. Limnology and Oceanography, 48, pp. 497–510.
   Web of Science ®Google Scholar
• Kutser, T. and Jupp, D.L.B., 2006, On the possibility of mapping living corals to the species level based on their optical signatures. Estuarine Coastal and Shelf Science, 69, pp. 607–614.
   Web of Science ®Google Scholar
• Kutser, T., Miller, I. and Jupp, D.L.B., 2006, Mapping coral reef benthic substrates using hyperspectral space-borne images and spectral libraries. Estuarine Coastal and Shelf Science, 70, pp. 449–460.
   Web of Science ®Google Scholar
• Leiper, I.A., Siebeck, U.E., Marshall, N.J. and Phinn, S.R., 2009, Coral health monitoring: linking coral colour and remote sensing techniques. Canadian Journal of Remote Sensing, 35, pp. 276–286.
   Web of Science ®Google Scholar
• Lesser, M.P. and Mobley, C.D., 2007, Bathymetry, water optical properties, and benthic classification of coral reefs using hyperspectral remote sensing imagery. Coral Reefs, 26, pp. 819–829.
   Web of Science ®Google Scholar
• Louchard, E.M., Reid, R.P., Stephens, F.C., Davis, C.O., Leathers, R.A. and Downes, T.V., 2003, Optical remote sensing of benthic habitats and bathymetry in coastal environments at Lee Stocking Island, Bahamas: a comparative spectral classification approach. Limnology and Oceanography, 48, pp. 511–521.
   Web of Science ®Google Scholar
• Maeder, J., Narumalani, S., Rundquist, D.C., Perk, R.L., Schalles, J., Hutchins, K. and Keck, J., 2002, Classifying and mapping general coral-reef structure using Ikonos data. Photogrammetric Engineering and Remote Sensing, 68, pp. 1297–1305.
   Web of Science ®Google Scholar
• Malthus, T.J. and Karpouzli, E., 2003, Integrating field and high spatial resolution satellite-based methods for monitoring shallow submersed aquatic habitats in the Sound of Eriskay, Scotland, UK. International Journal of Remote Sensing, 24, pp. 2585–2593.
   Web of Science ®Google Scholar
• Minghelli-Roman, A., Chisholm, J.R.M., Marchioretti, M. and Jaubert, J.M., 2002, Discrimination of coral reflectance spectra in the Red Sea. Coral Reefs, 21, pp. 307–314.
   Web of Science ®Google Scholar
• Mobley, C.D., Sundman, L.K., Davis, C.O., Bowles, J.H., Downes, T.V., Leathers, R.A., Montes, M.J., Bissett, W.P., Kohler, D.D.R., Reid, R.P., Louchard, E.M. and Gleason, A., 2005, Interpretation of hyperspectral remote-sensing imagery by spectrum matching and look-up tables. Applied Optics, 44, pp. 3576–3592.
   PubMed Web of Science ®Google Scholar
• Mumby, P.J., 2000, Methodologies for defining habitats. In Remote Sensing Handbook for Tropical Coastal Management, A.J. Edwards (Ed.), p. 316 (Paris: UNESCO).
   Google Scholar
• MUMBY, P.J., GREEN, E.P., Clark, C.D. and EDWARDS, A.J., 1998, Digital analysis of multispectral airborne imagery of coral reefs. Coral Reefs, 17, pp. 59–69.
   Google Scholar
• MUMBY, P.J., GREEN, E.P., EDWARDS, A.J. and CLARK, C.D., 1997, Coral reef habitat-mapping: how much detail can remote sensing provide? Marine Biology, 130, pp. 193–202.
   Google Scholar
• Mumby, P.J., Green, E.P., Edwards, A.J. and Clark, C.D., 1999, The cost-effectiveness of remote sensing for tropical coastal resources assessment and management. Journal of Environmental Management, 55, pp. 157–166.
   Web of Science ®Google Scholar
• Mumby, P.J. and Harborne, A.R., 1999, Development of a systematic classification scheme of marine habitats to facilitate regional management and mapping of Caribbean coral reefs. Biological Conservation, 88, pp. 155–163.
   Web of Science ®Google Scholar
• Mumby, P.J., Skirving, W., Strong, A.E., Hardy, J.T., LeDrew, E., Hochberg, E.J., Stumpf, R.P. and David, L.T., 2004, Remote sensing of coral reefs and their physical environment. Marine Pollution Bulletin, 48, pp. 219–228.
   PubMed Web of Science ®Google Scholar
• Myers, M.R., Hardy, J.T., Mazel, C.H. and Dustan, P., 1999, Optical spectra and pigmentation of Caribbean reef corals and macroalgae. Coral Reefs, 18, pp. 179–186.
   Web of Science ®Google Scholar
• Purkis, S.J., 2005, A “reef-up” approach to classifying coral habitats from IKONOS imagery. IEEE Transactions on Geoscience and Remote Sensing, 43, pp. 1–16.
   Google Scholar
• Purkis, S.J. and Pasterkamp, R., 2004, Integrating in situ reef-top reflectance spectra with Landsat TM imagery to aid shallow-tropical benthic habitat mapping. Coral Reefs, 23, pp. 5–20.
   Web of Science ®Google Scholar
• Roelfsema, C., Dennison, W.C. and Phinn, S., 2002, Spatial distribution of benthic microalgae on coral reefs as determined by remote sensing. Coral Reefs, 21, pp. 264–274.
   Web of Science ®Google Scholar
• Roelfsema, C., Marshall, J., Hochberg, E., Phinn, S., Goldizen, A. and Gill, T., 2006, Underwater Spectrometer System 2006 (UWSS04). Available online at: http://www.gpa.uq.edu.au/
   Google Scholar
• ROELFSEMA, C. and PHINN, S., 2010, Integrating field data with high spatial resolution multispectral satellite imagery for calibration and validation of coral reef benthic community maps. Journal of Applied Remote Sensing, 4, 043527, doi:10.1117/1.3430107.
   Google Scholar
• Wettle, M., 2005, Monitoring coral reef bleaching from space – a feasibility study using a physics-based remote sensing approach. PhD thesis, University of Hull, p. 270.
   Google Scholar