Nicotine affects protein complex rearrangement in Caenorhabditis elegans cells

References

• Akins RE, Levin PM, Tuan RS. (1992). Cetyltrimethylammonium bromide discontinuous gel electrophoresis: Mr-based separation of proteins with retention of enzymatic activity. Anal Biochem 202:172–178
   PubMed Web of Science ®Google Scholar
• Akins RE, Tuan RS. (1994). Separation of proteins using cetyltrimethylammonium bromide discontinuous gel electrophoresis. Mol Biotechnol 1:211–228
   PubMedGoogle Scholar
• Akins RE, Tuan RS. (2002). Cetyltrimethylammonium bromide discontinuous gel electrophoresis of proteins: Mr-based separation of proteins with retained native activity. In: Walker JM, ed. The protein protocols handbook. New Jersey, Humana Press Totowa, 87
   Google Scholar
• Almedom RB, Liewald JF, Hernando G, et al. (2009). An ER-resident membrane protein complex regulates nicotinic acetylcholine receptor subunit composition at the synapse. EMBO J 28:2636–2649
   PubMed Web of Science ®Google Scholar
• Aloy P, Russell RB. (2004). Ten thousand interactions for the molecular biologist. Nat Biotechnol 22:1317–1321
   PubMed Web of Science ®Google Scholar
• Andersson K, Arner P. (2001). Systemic nicotine stimulates human adipose tissue lipolysis through local cholinergic and catecholaminergic receptors. Int J Obes Relat Metab Disord 25:1225–1232
   PubMed Web of Science ®Google Scholar
• Antolik C, Catino DH, O'Neill AM, et al. (2007). The actin binding domain of ACF7 binds directly to the tetratricopeptide repeat domains of rapsyn. Neuroscience 145:56–65
   PubMed Web of Science ®Google Scholar
• Bajaj M. (2012). Nicotine and insulin resistance: when the smoke clears. Diabetes 61:3078–3080
   PubMed Web of Science ®Google Scholar
• Bakke J, Haj FG. (2014). Protein-tyrosine phosphatase 1B substrates and metabolic regulation. Semin Cell Dev Biol 37:58–65
   PubMed Web of Science ®Google Scholar
• Binzak BA, Wevers RA, Moolenaar SH, et al. (2001). Cloning of dimethylglycine dehydrogenase and a new human inborn error of metabolism, dimethylglycine dehydrogenase deficiency. Am J Hum Genet 68:839–847
   PubMed Web of Science ®Google Scholar
• Calabrese V, Mancuso C, Ravagna A, et al. (2007). In vivo induction of heat shock proteins in the substantia nigra following L-DOPA administration is associated with increased activity of mitochondrial complex I and nitrosative stress in rats: regulation by glutathione redox state. J Neurochem 101:709–717
   PubMed Web of Science ®Google Scholar
• Cypser JR, Johnson TE. (2002). Multiple stressors in Caenorhabditis elegans induce stress hormesis and extended longevity. J Gerontol a Biol Sci Med Sci 57:B109–B114
   PubMed Web of Science ®Google Scholar
• Engleman EA, Katner SN, Neal-Beliveau BS. (2016). Caenorhabditis elegans as a model to study the molecular and genetic mechanisms of drug addiction. Prog Mol Biol Transl Sci 137:229–252
   PubMed Web of Science ®Google Scholar
• Fang KP, Zhang JL, Ren YH, Qian YB. (2014). Talin-1 correlates with reduced invasion and migration in human hepatocellular carcinoma cells. Asian Pac J Cancer Prev 15:2655–2661
   PubMedGoogle Scholar
• Feng Z, Li W, Ward A, et al. (2006). A C. elegans model of nicotine-dependent behavior: regulation by TRP-family channels. Cell 127:621–633
   PubMed Web of Science ®Google Scholar
• Filozof C, Fernandez Pinilla MC, Fernandez-Cruz A. (2004). Smoking cessation and weight gain. Obes Rev 5:95–103
   PubMedGoogle Scholar
• Fonslow BR, Moresco JJ, Tu PG, et al. (2014). Mass spectrometry-based shotgun proteomic analysis of C. elegans protein complexes. In: WormBook, ed. The C. elegans Research Community. WormBook: 1–18. doi: 10.1895/wormbook.1.171.1. Available from: http://www.wormbook.org
   Google Scholar
• Franceschini A, Szklarczyk D, Frankild S, et al. (2013). STRING v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res 41:D808–D815
   PubMed Web of Science ®Google Scholar
• Fuller-Pace FV. (2013). DEAD box RNA helicase functions in cancer. RNA Biol 10:121–132
   PubMed Web of Science ®Google Scholar
• Gavin AC, Aloy P, Grandi P, et al. (2006). Proteome survey reveals modularity of the yeast cell machinery. Nature 440:631–636
   PubMed Web of Science ®Google Scholar
• Green R, Gally MF, Keeney JG, et al. (2009). Impact of cigarette smoke exposure on innate immunity: a Caenorhabditis elegans model. PLoS One 4:e6860
   PubMed Web of Science ®Google Scholar
• Hake SB, Allis CD. (2006). Histone H3 variants and their potential role in indexing mammalian genomes: the “H3 barcode hypothesis”. Proc Natl Acad Sci USA 103:6428–6435
   PubMed Web of Science ®Google Scholar
• Hong-Qi Y, Zhi-Kun S, Sheng-Di C. (2012). Current advances in the treatment of Alzheimer's disease: focused on considerations targeting Aβ and tau. Transl Neurodegener 1:21
   PubMedGoogle Scholar
• Ishihama Y, Oda Y, Tabata T, et al. (2005). Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol Cell Proteomics 4:1265–1272
   PubMed Web of Science ®Google Scholar
• Juhola MK, Shah ZH, Grivell LA, Jacobs HT. (2000). The mitochondrial inner membrane AAA metalloprotease family in metazoans. FEBS Lett 481:91–95
   PubMed Web of Science ®Google Scholar
• Kabbani N, Woll MP, Levenson R, et al. (2007). Intracellular complexes of the beta2 subunit of the nicotinic acetylcholine receptor in brain identified by proteomics. Proc Natl Acad Sci USA 104:20570–20575
   PubMed Web of Science ®Google Scholar
• Karunanithi S, Brown IR. (2015). Heat shock response and homeostatic plasticity. Front Cell Neurosci 9:68
   PubMed Web of Science ®Google Scholar
• Kellett KA, Hooper NM. (2009). Prion protein and Alzheimer disease. Prion 3:190–194
   PubMed Web of Science ®Google Scholar
• Lee SK, Li W, Ryu SE, et al. (2010). Vacuolar (H+)-ATPases in Caenorhabditis elegans: what can we learn about giant H + pumps from tiny worms? Biochim Biophys Acta 1797:1687–1695.
   PubMed Web of Science ®Google Scholar
• Leung MC, Williams PL, Benedetto WP, et al. (2008). Caenorhabditis elegans: an emerging model in biomedical and environmental toxicology. Toxicol Sci 106:5–28
   PubMed Web of Science ®Google Scholar
• Li X, Buxbaum JN. (2011). Transthyretin and the brain re-visited: is neuronal synthesis of transthyretin protective in Alzheimer's disease? Mol Neurodegener 6:79.
   PubMed Web of Science ®Google Scholar
• Link CD. (1995). Expression of human beta-amyloid peptide in transgenic Caenorhabditis elegans. Proc Natl Acad Sci USA 92:9368–9372
   PubMed Web of Science ®Google Scholar
• Markaki M, Tavernarakis N. (2010). Modeling human diseases in Caenorhabditis elegans. Biotechnol J 5:1261–1276
   PubMed Web of Science ®Google Scholar
• Matta SG, Balfour DJ, Benowitz NL, et al. (2007). Guidelines on nicotine dose selection for in vivo research. Psychopharmacology (Berl) 190:269–319
   PubMed Web of Science ®Google Scholar
• Millar NS. (2003). Assembly and subunit diversity of nicotinic acetylcholine receptors. Biochem Soc Trans 31:869–874
   PubMed Web of Science ®Google Scholar
• Murphy CT, Hu PJ. (2013). Insulin/insulin-like growth factor signaling in C. elegans. In: Greenwald I, ed. The C. elegans Research Community. WormBook, 1–43. doi: 10.1895/wormbook.1.164.1. Available from: http://www.wormbook.org
   Google Scholar
• Musselman HN, Neal-Beliveau B, Nass R, Engleman EA. (2012). Chemosensory cue conditioning with stimulants in a Caenorhabditis elegans animal model of addiction. Behav Neurosci 126:445–456
   PubMed Web of Science ®Google Scholar
• Nestler EJ. (2014). Epigenetic mechanisms of drug addiction. Neuropharmacology 76:259–268
   PubMed Web of Science ®Google Scholar
• Nicholls P. (2012). Classical catalase: ancient and modern. Arch Biochem Biophys 525:95–101
   PubMed Web of Science ®Google Scholar
• Padmanabhan S, Mukhopadhyay A, Narasimhan SD, et al. (2009). A PP2A regulatory subunit regulates C. elegans insulin/IGF-1 signaling by modulating AKT-1 phosphorylation. Cell 136:939–951
   PubMed Web of Science ®Google Scholar
• Paulo JA, Brucker WJ, Hawrot E. (2009). Proteomic analysis of an alpha7 nicotinic acetylcholine receptor interactome. J Proteome Res 8:1849–1858
   PubMed Web of Science ®Google Scholar
• Paulo JA, Urrutia R, Kadiyala V, et al. (2013). Cross-species analysis of nicotine-induced proteomic alterations in pancreatic cells. Proteomics 13:1499–1512
   PubMed Web of Science ®Google Scholar
• Perkins DN, Pappin DJ, Creasy DM, Cottrell JS. (1999). Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20:3551–3567. http://www.matrixscience.com/)
   PubMed Web of Science ®Google Scholar
• Plazas-Mayorca MD, Vrana KE. (2011). Proteomic investigation of epigenetics in neuropsychiatric disorders: a missing link between genetics and behavior? J Proteome Res 10:58–65
   PubMed Web of Science ®Google Scholar
• Pogocki D, Ruman T, Danilczuk M, et al. (2007). Application of nicotine enantiomers, derivatives and analogues in therapy of neurodegenerative disorders. Eur J Pharmacol 563:18–39
   PubMed Web of Science ®Google Scholar
• Poirier Y, Antonenkov VD, Glumoff T, Hiltunen JK. (2006). Peroxisomal beta-oxidation – a metabolic pathway with multiple functions. Biochim Biophys Acta 1763:1413–1426
   PubMed Web of Science ®Google Scholar
• Polati R, Zapparoli G, Giudici P, Bossi A. (2009). A CTAB based method for the preparation of total protein extract of wine spoilage microorganisms for proteomic analysis. J Chromatogr B Analyt Technol Biomed Life Sci 877:887–891
   PubMed Web of Science ®Google Scholar
• Przewloka MR, Venkei Z, Bolanos-Garcia VM, et al. (2011). CENP-C is a structural platform for kinetochore assembly. Curr Biol 21:399–405
   PubMed Web of Science ®Google Scholar
• Renthal W, Nestler EJ. (2009). Chromatin regulation in drug addiction and depression. Dialogues Clin Neurosci 11:257–268
   PubMedGoogle Scholar
• Rozema D, Gellman SH. (1995). Artificial chaperones: protein refolding via sequential use of detergent and cyclodextrin. J Am Chem Soc 117:2373–2374
   Web of Science ®Google Scholar
• Schafer WR. (2004). Addiction research in a simple animal model: the nematode Caenorhabditis elegans. Neuropharmacology 47:123–131
   PubMed Web of Science ®Google Scholar
• Schrimpf SP, Hengartner MO. (2010). A worm rich in protein: quantitative, differential, and global proteomics in Caenorhabditis elegans. J Proteomics 73:2186–2197
   PubMed Web of Science ®Google Scholar
• Schuller HM. (2009). Is cancer triggered by altered signalling of nicotinic acetylcholine receptors? Nat Rev Cancer 9:195–205.
   PubMed Web of Science ®Google Scholar
• Schulz TJ, Zarse K, Voigt A, et al. (2007). Glucose restriction extends Caenorhabditis elegans life span by inducing mitochondrial respiration and increasing oxidative stress. Cell Metab 6:280–293
   PubMed Web of Science ®Google Scholar
• Sellings L, Pereira S, Qian C, et al. (2013). Nicotine-motivated behavior in Caenorhabditis elegans requires the nicotinic acetylcholine receptor subunits acr-5 and acr-15. Eur J Neurosci 37:743–756
   PubMed Web of Science ®Google Scholar
• Sheps JA, Ralph S, Zhao Z, et al. (2004). The ABC transporter gene family of Caenorhabditis elegans has implications for the evolutionary dynamics of multidrug resistance in eukaryotes. Genome Biol 5:R15
   PubMed Web of Science ®Google Scholar
• Shoemaker BA, Panchenko AR. (2007a). Deciphering protein-protein interactions. Part I. Experimental techniques and databases. PLoS Comput Biol 3:e42
   PubMed Web of Science ®Google Scholar
• Shoemaker BA, Panchenko AR. (2007b). Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners. PLoS Comput Biol 3:e43
   PubMed Web of Science ®Google Scholar
• Shoop RD, Yamada N, Berg DK. (2000). Cytoskeletal links of neuronal acetylcholine receptors containing alpha 7 subunits. J Neurosci 20:4021–4029
   PubMed Web of Science ®Google Scholar
• Siegmund B, Leitner E, Pfannhauser W. (1999). Determination of the nicotine content of various edible nightshades (Solanaceae) and their products and estimation of the associated dietary nicotine intake. J Agric Food Chem 47:3113–3120
   PubMed Web of Science ®Google Scholar
• Skok MV. (2009). Editorial: To channel or not to channel? Functioning of nicotinic acetylcholine receptors in leukocytes. J Leukoc Biol 86:1–3
   PubMed Web of Science ®Google Scholar
• Sobkowiak R, Kowalski M, Lesicki A. (2011). Concentration- and time-dependent behavioral changes in Caenorhabditis elegans after exposure to nicotine. Pharmacol Biochem Behav 99:365–370
   PubMed Web of Science ®Google Scholar
• Sobkowiak R, Lesicki A. (2009). Genotoxicity of nicotine in cell culture of Caenorhabditis elegans evaluated by the comet assay. Drug Chem Toxicol 32:252–257
   PubMed Web of Science ®Google Scholar
• Sobkowiak R, Lesicki A. (2011). Cell signaling pathways activated by nicotine. Adv Cell Biol 38:581–596
   Google Scholar
• Sobkowiak R, Musidlak J, Lesicki A. (2014). In vitro genoprotective and genotoxic effect of nicotine on human leukocytes evaluated by the comet assay. Drug Chem Toxicol 37:322–328
   PubMed Web of Science ®Google Scholar
• Stiernagle T. (2006). Maintenance of C. elegans. In: Fay D, ed. The C. elegans Research Community. WormBook, 1–11. doi: 10.1895/wormbook.1.101.1. Available from: http://www.wormbook.org
   Google Scholar
• Sudheer AR, Muthukumaran S, Devipriya N, Menon VP. (2007a). Ellagic acid, a natural polyphenol protects rat peripheral blood lymphocytes against nicotine-induced cellular and DNA damage in vitro: with the comparison of N-acetylcysteine. Toxicology 230:11–21
   PubMed Web of Science ®Google Scholar
• Sudheer AR, Muthukumaran S, Kalpana C, et al. (2007b). Protective effect of ferulic acid on nicotine-induced DNA damage and cellular changes in cultured rat peripheral blood lymphocytes: a comparison with N-acetylcysteine. Toxicol In Vitro 21:576–585
   PubMed Web of Science ®Google Scholar
• Taki FA, Pan X, Lee MH, Zhang B. (2014). Nicotine exposure and transgenerational impact: a prospective study on small regulatory microRNAs. Sci Rep 4:7513
   PubMed Web of Science ®Google Scholar
• Tessarz P, Kouzarides T. (2014). Histone core modifications regulating nucleosome structure and dynamics. Nat Rev Mol Cell Biol 15:703–708
   PubMed Web of Science ®Google Scholar
• Towbin BD, Gonzalez-Aguilera C, Sack R, et al. (2012). Step-wise methylation of histone H3K9 positions heterochromatin at the nuclear periphery. Cell 150:934–947
   PubMed Web of Science ®Google Scholar
• Tuesta LM, Zhang Y. (2014). Mechanisms of epigenetic memory and addiction. EMBO J 33:1091–1103
   PubMed Web of Science ®Google Scholar
• Waggoner LE, Dickinson KA, Poole DS, et al. (2000). Long-term nicotine adaptation in Caenorhabditis elegans involves PKC-dependent changes in nicotinic receptor abundance. J Neurosci 20:8802–8811
   PubMed Web of Science ®Google Scholar
• Walker JM. (2002). The protein protocols handbook. Totowa, New Jersey: Humana Press Inc
   Google Scholar
• Walsh DM, Teplow DB. (2012). Alzheimer's disease and the amyloid β-protein. Prog Mol Biol Transl Sci 107:101–124
   PubMed Web of Science ®Google Scholar
• Wang X, Cattaneo F, Ryno L, et al. (2014). The systemic amyloid precursor transthyretin (TTR) behaves as a neuronal stress protein regulated by HSF1 in SH-SY5Y human neuroblastoma cells and APP23 Alzheimer's disease model mice. J Neurosci 34:7253–7265
   PubMed Web of Science ®Google Scholar
• West KA, Brognard J, Clark AS, et al. (2003). Rapid Akt activation by nicotine and a tobacco carcinogen modulates the phenotype of normal human airway epithelial cells. J Clin Investig 111:81–90
   PubMed Web of Science ®Google Scholar
• WHO (2012). WHO global report: mortality attributable to tobacco. http://www.who.int/tobacco/publications/surveillance/rep_mortality_attributable/en/
   Google Scholar
• Wolf FW, Heberlein U. (2003). Invertebrate models of drug abuse. J Neurobiol 54:161–178
   PubMed Web of Science ®Google Scholar
• Wonnacott S, Sidhpura N, Balfour DJ. (2005). Nicotine: from molecular mechanisms to behaviour. Curr Opin Pharmacol 5:53–59
   PubMed Web of Science ®Google Scholar
• Yan J, Chao DL, Toba S, et al. (2013). Kinesin-1 regulates dendrite microtubule polarity in Caenorhabditis elegans. Elife 2:e00133
   PubMed Web of Science ®Google Scholar
• Yeom M, Shim I, Lee H, Hahm D. (2005). Proteomic analysis of nicotine-associated protein expression in the striatum of repeated nicotine-treated rats. Biochem Biophys Res Commun 326:321–328
   PubMed Web of Science ®Google Scholar
• Zhang J, Hashmi S, Cheema F, et al. (2013). Regulation of lipoprotein assembly, secretion and fatty acid β-oxidation by Krüppel-like transcription factor, klf-3. J Mol Biol 425:2641–2655
   PubMed Web of Science ®Google Scholar