15
Views
0
CrossRef citations to date
0
Altmetric
Original Articles

Further Readings in Geomicrobiology

Pages 369-373 | Published online: 11 Nov 2010

References

  • Ansede , JH , Friedman , R and Yoch , DC . 2001 . Phylogenetic analysis of culturable dimethyl sulfideproducing bacteria from a Spartina-dominated salt marsh and estuarine water . Appl Environ Microbiol , 67 : 1210 – 1217 .
  • Bae , W , Rang , T , Jung , J , Park , C , Choi , S and Jeong , B . 2000 . Purification and characterization of NADHdependent Cr(VI) reductase from Escherichia coli ATCC 33456 . J Microbiol Biotechnol , 10 : 580586
  • Barbie , F , Comic , L and Pljakic , E . 2000 . Iron and manganese bacteria populations in groundwater sources . Eur Water Manage , 3 : 26 – 30 .
  • Battin , TJ , Wille , A , Sattler , B and Psenner , R . 2001 . Phylogenetic and functional heterogeneity of sediment biofilms along environmental gradients in a glacial stream . Appl Environ Microbiol , 67 : 799807
  • Balkeney , MD , Moulaei , T and DiChristina , JT . 2000 . Fe(III) reduction activity and cytochrome content of Shewanella putrefaciens grown on ten compounds as sole terminal electron acceptors . Microbiol Res , 155 : 87 – 94 .
  • Beliaev , AS . 2000 . Isolation and characterization of multicytochrome gene cluster from Shewanella putrefaciens MR-I involved in iron and manganese reduction . Diss Abstr Int B, vol , 61 : 670
  • Benoit , JM , Gilmour , CC and Mason , RP . 2001 . Aspects of bioavailability of mercury for methylation in pure cultures of Desulfovibrio propionicus ( 1 pr3) . Appl Environ Microbiol , 67 : 51 – 58 .
  • Benoit , JM , Gilmour , CC and Mason , RP . 2001 . The influence of sulfide on solid-phase mercury bioavail-ability for methylation by pure cultures of Desulfobulbus propionicus ( 10r3) . Environ Sei Technol , 35 : 127 – 132 .
  • Blumenroth P, Bosecker K. 2000. Microbial decomposition of cyanide in gold leaching process waters. In: Wippermann T, editor. Bergbau Umwelt: langfristige geochemische Einflüße. Berlin: Springer-Verlag, p 183-197.
  • Braker G, Ayala-del-Rio HL, Devol AH, Fesefeldt A, Tiedje JM. 2001. Community structure of denitrifiers. Bacteria, and Archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS ) and 16S rRNA genes. Appl Environ Microbiol 67:1893-1901.
  • Broholm , MM and Arvin , E . 2000 . Biodegradation of phenols in a sandstone aquifer under aerobic con-ditions and mixed nitrate and iron reducing conditions . J Contain Hydrol , 44 : 239 – 273 .
  • Button , DK and Robertson , BR . 2001 . Determination of DNA content of aquatic bacteria by flow cytometry . Appl Environ Microbiol , 67 : 1636 – 1645 .
  • Campbell , SC , Olson , GJ , Clark , TR and McFeters , G . 2001 . Biogenic production of cyanide and its appli-cation to gold recovery . J Industr Microbiol Biotechnol , 26 : 134 – 139 .
  • Carpenter DJ. 1998. Controls on the reduction and precipitation of molybdenum and the implications for geochemical barriers. WM '90 Proc Am Nue Soc, LaGrange Park, IL. Computer optical disk. p 1873-1879.
  • Champine , JE , Underhill , B , Johnston , JM , Lilly , WW and Goodwin , S . 2000 . Electron transfer in the dissimilatory iron-reducing bacterium Geobacter metallireducens . Anaerobe , 6 : 187 – 196 .
  • Derakshani , M , Lukow , T and Liesack , W . 2001 . Novel bacterial lineages at the (subdivision level as detected by signature nucleotide-targeted recovery of 16S rRNA genes from bulk soil and rice roots of flooded rice microcosms . Appl Environ Microbiol , 67 : 623 – 631 .
  • Detmers , J , Brüchert , V , Habicht , KS and Kuever , J . 2001 . Diversity of sulfur isotope fractionations by sulfate-reducing prokaryotes . Appl Environ Microbiol , 67 : 888 – 894 .
  • Dew DW, Basson P, Norton A, Crudwell F. 2001. Recovery of nickel from nickel bearing sulfide minerals by bioleacWng. Patent PCT Int Appl WO Ol 18,268. 15 March 2001,40 p.
  • Duarte , GF , Rosado , AS , Seidin , L , de Araujo , W and van Elsas , JD . 2001 . Analysis of bacterial community structue in sulfurous-oil-containing soils and detection of species carrying dibenzotWophene desulfurization (dsz) genes . Appl Environ Microbiol , 67 : 1052 – 1062 .
  • Egland , PG , Gibson , J and Harwood , CS . 2001 . Reductive, conenzyme A-mediated pathway for 3-chlorobenzoate degradation in the phototrophic bacterium Rhodopseudomona s palustris . Appl Environ Microbiol , 67 : 1396 – 1399 .
  • Ehrlich , HL . 2001 . Past, present and future of biohydrometallurgy . Hydrometallurgy , 59 : 127 – 134 .
  • Elvert , M , Suess , E , Greinert , J and Whiticar , MJ . 2000 . Archaea mediating anaerobic methane oxidation in deep-sea sediments at cold seeps of the eastern Aleutian subduction zone . Org Geochem , 31 : 1175 – 1187 .
  • Elsaied , H and Naganuma , T . 2001 . Phylogenetic diversity of ribulose-l,5-bisphosphate carboxyolase/ oxygenase large-subunit genes from deep-sea microorganisms . Appl Environ Microbiol , 67 : 1751 – 1765 .
  • Franklin , RB , Garland , JL , Bolster , CH and Mills , AL . 2001 . Impact of dilution on microbial community structure and functional potential: comparison of numerical simulations and batch culture experiments . Appl Environ Microbiol , 67 : 632 – 645 .
  • Fredrickson , JK , Zachara , JM , Kukkadapu , RK , Gorby , YA , Smith , SC and Brown , CF . 2001 . Biotransfor-mation of Ni-substituted hydrous ferric oxide by an Fe(III)-reducing bacterium . Environ Sei Technol , 35 : 703 – 712 .
  • Galushko , AS and Schink , B . 2000 . Oxidation of acetate through reactions of the citric acid cycle by Geobacter sulfurreducens in pure culture and in syntrophic culture . Arch Microbiol , 174 : 314321
  • Garcia-Pichel , F , Lopez-Cortes , A , übel , N and U . 2001 . Phylogenetic and morphological diversity of cyanobacteria in soil desert crusts from the Colorado Plateau . Appl Environ Microbiol , 67 : (1902)(1910)
  • Grossman , MJ , Lee , MK , Prince , RC , Minak-Bernero , V , George , GN and Pickering , IJ . 2001 . Deep desulfurization of extensively hydrodesulfurized middle distillate oil by Rhodococcus sp . strain ECRD-1. Appl Environ Microbiol , 67 : 1949 – 1952 .
  • Guan , LL , Kanon , K and Kamino , K . 2001 . Effect of exogenous siderophores on iron uptake activity of marine bacteria under iron-limited conditions . Appl Environ Microbiol , 67 : 1710 – 1717 .
  • Hanzelka , BL , Darcy , TJ and Reeve , JN . 2001 . TFE, an archaeal transcription factor in Methanobacterium thermoautotrophicum related to eucaryal transcription factor TFIIEa . J Bacterial , 183 : 18131818
  • Hyenstrand , P , Rydin , E and Gunnerhed , M . 2000 . Response of pelagic cyanobacateria to iron addition: enclosure experiments from Lake Erken . J Plankton Res , 22 : 1113 – 1126 .
  • Johnsen , U , Selig , M , Xavier , KB , Santos , H and Schönheit , P . 2001 . Different glycolytic pathways for glucose and fructose in the halophilic archaeon Halococcus saccharolyticus . Arch Microbiol , 175 : 52 – 61 .
  • Jones , CA , Langner , HW , Anderson , K , McDermott , TR and Inskeep , WP . 2000 . Rates of microbially mediated arsenate reduction and solubilization . Soil Sei Soc Am J , 64 : 600 – 608 .
  • Kappler , U , Friedrich , CG , Trüper , HG and Dahl , C . 2001 . Evidence for two pathways of thiosulfate oxidation in Starkeya novella (formerly Thiobacillus novellas ) . Arch Microbiol , 175 : 102 – 111 .
  • Karavaiko , GI , Trurova , TP , Tsalpina , IA and Bogdanova , TI . 2000 . Investigation of the phylogenetic position of aerobic, moderately thermophilic bacteria oxidizing Fe2+, S0, and sulfide minerals and affiliated to the genus Sidfobacillus . Microbiology (Moscow) , 69 : 732 – 735 .
  • Knauer , K , Nepf , HM and Hemond , HF . 2000 . The production of chemical heterogeneity in Upper Mystic Lake . Limnol Oceanogr , 45 : 1647 – 1654 .
  • Laempe , D , Jahn , M , Breese , K , Schägger , H and Fuchs , G . 2001 . Anaerobic metabolism of 3hydroxybenzoate by the denitrifying bacterium Thauera aromatica . J Bacteriol , 183 : 968 – 979 .
  • Laue , H , Friedrich , M , Ruff , J and Cook , AM . 2001 . Dissimilatory sulfite reductase (desulfoviridin) of the taurine-degrading, non-sulfate-reducing bacterium Bilophila wadsworthia RZATAU contains a fused DsrB-DsrD subunit . J Bacteriol , 183 : 1727 – 1733 .
  • Lee , S-W , Glickmann , E and Cooksey , DA . 2001 . Chromosomal locus for cadmium resistance I Pseudomonas putida consisting of a cadmium-transporting ATPase and a MerR family response regulator . Appl Environ Microbiol , 67 : 1437 – 1444 .
  • Li , H-M and Ke , JJ . 2001 . Influence of Cu2+ and Mg2+ on the growth and activity of Ni2+ adapted Thiobacillus ferrooxidans . Miner Eng , 14 : 113 – 116 .
  • Liu , Y , Fu , J , Chen , P , Yu , X and Yang , P . 2000 . Studies on biosorption of Au3+ by Bacillus megaterium . Weishengwu Xuebao , 40 : 425 – 429 .
  • Lomans , BP , Luderer , R , Steenbakkers , P , Pol , A , van der Drift , C , Vogels , GD and Op den Camp , HIM . 2001 . Microbial populations involved in cycling of dimethyl sulfide and methanethiol in freshwater sediments . Appl Environ Microbiol , 67 : 1044 – 1051 .
  • Madrid , VM , Taylor , GT , Scranton , MI and Chistoserdov , AY . 2001 . Phylogenetic diversity of bacterial and archaeal communities in the anoxic zone of the Cariaco Basin . Appl Environ Microbiol , 67 : 1663 – 1674 .
  • Marsh , TL and Mclnerney , MJ . 2001 . Relationship of hydrogen bioavailability to chromate reduction in aquifer sediments . Appl Environ Microbiol , 67 : 1517 – 1521 .
  • Marteinsson , VT , Kristjánsson , JK , Kristmandóttir , H , Dahlkvist , M , aelig;mundson , K , Hanrrington , M , Petursdottir , SK , Geptner , A and Stoffers , P . 2001 . Discovery and description of giant submarine smectite cones on the seafloor in Eyjafjordur, Northern Iceland, and a novel thermal microbial habitat . Appl Environ Microbiol , 67 : 827 – 833 .
  • Mather ID, Parkes RJ. 2000. Bacterial profiles in sediments of the eastern flank of the Juan de Fuca Ridge, sites 1026 and 1027. Proc Ocean Drill Prog: Sei Results 168:161-165
  • McLean , J and Beveridge , TJ . 2001 . Chromate reduction by a pseudomonad isolated from a site contaminated with chromated copper arsenate . Appl Environ Microbiol , 67 : 1076 – 1084 .
  • Melamud VS. 2000. Prospects for application of moderately thermophilic sulfite-oxidizing bacteria in gold biohydrometallurgy. Tsevtn Met (Moscow), No 8, pp 30-33.
  • Mertens , JA . 1999 . Expression and biochemical characterization of recombinant nitrate reductase and its active molybdenum reductase fragment . Diss Abstr Int, , B(2000) ( 61 ) : 2 – 49 .
  • Michel , C , Brugna , M , Aubert , C , Bernadac , A and Bruschi , M . 2001 . Enzymatic reduction of chromate: comparative studies using sulfate-reducting bacteria Key role of polyheme cytochromes c and hydrogenases . Appl Microbiol Biotechnol , 55 : 95 – 100 .
  • Mohamed , ME-S , Zaar , A , Ebenau-Jehle , C and Fuchs , G . 2001 . Reinvestigation of a new type of aerobic benzoate metabolism in the proterobacterium Azoarcus evansii . J Bacteriol , 183 : 1899 – 1908 .
  • Mohod , AM , Salmukhe , PB and Pakmkar , KM . 1999 . Bioleaching of Mn from low-grade ores using Mnreducing microbial cultures . J Indian Inst Sei , 79 : 275 – 285 .
  • Moody , JD , Freman , JP , Doerge , DR and Cerniglia , CE . 2001 . Degradation of phenanthrene and anthracene by cell suspensions of Mycobacterium sp . strain PYR-I. Appl Environ Microbiol , 67 : 14761484
  • Mulligan CN, Galvez-Cloutier R. 2000. Bioleaching of copper residues by Aspergillus niger. Water Sei Technol 41 :(12 Envtl Biotechnol) 255-262.
  • Myers , JM and Myers , CR . 2001 . Role of outer membrane cytochromes OmcA and OmcB ofShewanella putrefaciens MR-1 in reduction of manganese dioxide . Appl Environ Microbiol , 67 : 260 – 269 .
  • Nepple , BB , Kessi , J and Bachofen , R . 2000 . Chromate reduction by Rhodobacter sphaeroides . J Ind Microbiol Biotechnol , 25 : 198 – 203 .
  • O'Connor , KE , Witholt , B and Duetz , W . 2001 . p-Hydroxyphenylacetic acid metabolism in Pseudomonas putida F6 . J Bacteriol , 183 : 928 – 933 .
  • Orphan , VJ , Hinrichs , K-U , Ussier , W III , Paull , CK , Taylor , LT , Sylva , SP , Hayes , JM and DeLong , EF . 2001 . Comparative analysis of methane-oxidizing archaea and sulfate-reducing bacteria in anoxic sediments . Appl Environ Microbiol , 67 : 1922 – 1934 .
  • Podolsskaya , VI , Sokolovskaya , AS , Ermolenko , AI , UÍberg , ZR and Grishchenko , NI . 2000 . Oxidation of arsenic compounds in waste water of hydrometallurgical plants by Pseudomonas fluorés cens . Khim Tekkhnol Vody , 22 : 418 – 427 .
  • Rabus , R , Wilkes , H , Behrends , A , Armstroff , A , Fischer , T , Pierik , AJ and Widdel , F . 2001 . Anaerobic initial reaction of n-alkanes in a denitrifying bacterium: Evidence for (1-methylpentyl) succinate as initial product and for involvement of an organic radical in n-hexane metabolism . J Bacteriol , 183 : 1707 – 1715 .
  • Rivkin , RB and Legendre , L . 2001 . Biogenic carbon cycling in the upper ocean: effects of microbial respiration . Science , 291 : 2398 – 2400 .
  • Roux , M , Sarret , G , Pignot-Paintran , I , Fontecave , M and Coves , J . 2001 . Mobilization of selenite by Ralstonia metallidurans CH34 . Appl Environ Microbiol , 67 : 769 – 773 .
  • Sand , W , Gehrke , T , Josza , P-G and Schippers , A . 2001 . (Biochemistry of bacterial leaching-direct vs . indirect bioleaching. Hydrometallurgy , 59 : 159 – 175 .
  • Sato , YK , Nishimori , M , Hayashi , J , Ono , S and Takematsu , N . 2001 . Microbially mediated growth process of maganese oxides . Umi no Kenkyu , 10 : 15 – 23 .
  • Sidel H, Ondruschka J, Morgenstern P, Wennrich R, Hoffmann P. 2000. Bioleaching of heavy metal-contaminated sediment by indigenou s Thiobacllus spp. : metal solubilization and sulfur oxidation in the presence of surfactants. Appl Microbiol Biotechnol 54:854-857.
  • Slieman , TA and Nicholson , WL . 2001 . Role of dipicolinic acid in survival of Bacillus subtilis spores exposed to artificial and solar UV radiation . Appl Environ Microbiol , 67 : 1274 – 1279 .
  • Snoeyenbos-West , O , Van Praagh , CG , Lovley , DR , De Wever , H , Cole , JR , Fettig , MR , Hogan , DA and Tiedje , JM . 2001 . Letter to the Editor and Reply: Trichlombacter thiogenes should be renamed as a Geobacter species . Appl Environ Microbiol , 67 : 1020 – 1022 .
  • Sobolev , D and Roden , EE . 2001 . Suboxic deposition of ferric iron by bacteria in opposing gradients of Fe(II) and oxygen at circumneutral pH . Appl Environ Microbiol , 67 : 1328 – 1334 .
  • Sorokin , DY , Kuenen , JG and Jetten , MSM . 2001 . Denitrification at extremely high pH values by the alkaliphilic, obligately chemolithoautotropMc, sulfur-oxidizing bacterium Thioalkalivibrio denitrifieans strain ALD . Arch Microbiol , 175 : 94 – 101 .
  • Summons , RE , Orphan , V , Sylva , SP and Hayes , JM . 2000 . Molecular and isotopic analysis of anaerobic methane-oxidizing communities in marine sediments . Org Geochem , 31 : 1685 – 1701 .
  • Surkov , AV , Böttcher , ME and Kuever , J . 2000 . Stable sulfur isotope fractionation during the reduction of thiosulfate by Dethiosulfovibrio russensis . Arch Microbiol , 174 : 448 – 451 .
  • Suzuki , M , Cui , ZJ , Ishii , M and IgarasW , Y . 2001 . Nitrate respiratory metabolism in an obligately autotrophic hydrogen-oxidizing bacterium, Hydrogenobacter thermophilus TK-6 . Arch Microbiol , 175 : 7584
  • Switzer Blum , J , Stolz , JF , Oren , A and Oremland , RS . 2001 . Selenihalanaembacter shriftii gen . nov., spec. nov., a halophilic anaerobe from Dead Sea sediments that respires selenate. Arch Microbiol , 175 : 208 – 219 .
  • Sycheva EA, Bortsov VD, Khan OA. 2000. Bioleaching of Cu and Zn from rusty Aubearing raw material. Tsvetn Met (Moscow), No. 8, pp 34-37.
  • Taghavi S, Delanghe H, Lodewyckx C, Mergeay M, van der Lelie D. 2001. Nickel-resistance-based minitransposon: new tools for genetic maniupulation of environmental bacteria Appl Environ Microbiol 67:821-826.
  • Tankwe , SPC , Statham , PJ and Price , NB . 2000 . Biogeochemical cycling of Mn and Fe in an area affected by eutropHcation: the Adriatic Sea . Esturine, Coastal Shelf Sei , 51 : 491 – 506 .
  • Thamdrup , B and Dalsgaard , T . 2000 . The fate of ammonium in anoxic manganese oxide-rich marine sediment . Geochim Cosmochim Acta , 64 : 4157 – 4164 .
  • Thomsen TR, Finster K, Ramsing NB. 2001. Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment Appl Environ Microbiol 67:1646-1656.
  • Tor , JM , Kashefi , K and Lovley , DR . 2001 . Acetate oxidation coupled to Fe(III) reduction in hyperthermophilic microorganisms . Appl Environ Microbiol , 67 : 1363 – 1365 .
  • Tributsch , H . 2001 . Direct versus indirect bioleaching . Hydrometallurgy , 59 : 177 – 185 .
  • Ubaldini , S , Veglio , F , Toro , L and Abbruzzese , C . 2000 . Combined biohydrometallurgical process for gold recovery from refractory stibnite . Miner Eng , 13 : 1641 – 1646 .
  • van der Mei , HC and Busscher , HK . 2001 . Electrophoretic mobility distributions of single-strain microbial populations . Appl Environ Microbiol , 67 : 491 – 494 .
  • Vieille , C and Zeikus , GJ . 2001 . Hyperthermophilic enzymes: sources, uses, and molecular mechanisms for thermostability . Microbiol MoI Biol Rev , 65 : 1 – 43 .
  • Wielinga , B , Mizuba , MM , Hansel , CM and Fendorf , S . 2001 . Iron promoted reduction of chromate by dissimilatory iron-reducing bacteria . Environ Sei Technol , 35 : 522 – 527 .
  • Wieringa , EBA , Overmann , J and Cypionka , H . 2000 . Detection of abundant sulfate-reducing bacteria in marine oxic sediment layers by a combined cultivation and molecular approach . Environ Microbiol , 2 : 417 – 427 .
  • Witne , JY and Phillips , CV . 2001 . Bioleaching of Ok Tedi copper concentrate in oxygen- and carbon dioxide-enriched air . Miner Eng , 14 : 25 – 48 .
  • Winter , C , Moeseneder , MM and Herndl , GJ . 2001 . Impact of UV radiation on bacterioplankton community composition . Appl Environ Microbiol , 67 : 665 – 672 .
  • Zachara , JM , Fredrickson , JK , Smith , SC and Gassman , PL . 2001 . Solubilization of Fe(III) oxide-bound trace metals by a dissimilatory Fe(III) reducing bacterium . Geochim Cosmochim Acta , 65 : 75 – 93 .
  • Zheng , Y , Anderson , RF , van Geen , A and Kuwabara , J . 2000 . Authigenic molybdenum formation in marine sediments: a link to pore water sulfide in the Santa Barbara Basin . Geochim Cosmochim Acta , 64 : 4165 – 4178 .
  • Zhou , Z , Takaya , N , Sakairi , MAC and Shoun , H . 2001 . Oxygen requirement for denitriflcation by the fungus Fusarium axysprium . Arch Microbiol , 175 : 19 – 25 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.