299
Views
25
CrossRef citations to date
0
Altmetric
Original Articles

Methanogenesis and Methanogen Diversity in Three Peatland Types of the Discontinuous Permafrost Zone, Boreal Western Continental Canada

, , &
Pages 641-651 | Received 28 Apr 2006, Accepted 08 Aug 2006, Published online: 23 Feb 2007

REFERENCES

  • Barns , S M , Fundyga , R E , Jeffries , M W and Pace , N R . 1994 . Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment . Proc Natl Acad Sci , 91 : 1609 – 1613 . [INFOTRIEVE] [CSA]
  • Basiliko , N and Yavitt , J B . 2001 . Influence of Ni, Co, Fe and Na additions on methane production in Sphagnum-dominated Northern American peatlands . Biogeochemistry , 52 : 133 – 153 . [CSA] [CROSSREF]
  • Basiliko , N , Yavitt , J B , Dees , P M and Merkel , S M . 2003 . Methane biogeochemistry and methanogen communities in two northern peatland ecosystems, New York State . Geomicrobiol J , 20 : 563 – 577 . [CSA]
  • Beilman , D W , Vitt , D H and Halsey , L A . 2001 . Localized permafrost peatlands in western Canada: definition, distributions and degradation . Arct Antarct Alp Res , 33 : 70 – 77 . [CSA] [CROSSREF]
  • Bowen , H JM . 1979 . Environmental Chemistry of the Elements , 333 London , , United Kingdom : Academic Press .
  • Braid , M D , Daniels , L M and Kitts , C L . 2003 . Removal of PCR inhibitors from soil DNA by chemical flocculation J . Micro Methods , 52 : 389 – 393 . [CSA] [CROSSREF]
  • Brauer , S L , Yashiro , E , Ueno , N G , Yavitt , J B and Zinder , S H . 2006 . Characterization of acid-tolerant H2/CO2-utilizing methanogenic enrichment cultures from an acidic peat bog in New York State . FEMS Microbiol Ecol , 57 : 206 – 216 . [INFOTRIEVE] [CSA] [CROSSREF]
  • Brauer , S L , Yavitt , J B and Zinder , S H . 2004 . Methanogenesis in McLean Bog, an acidic peat bog in upstate New York: Stimulation by H2/CO2 in the presence of Rifampicin, or by low concentrations of acetate . Geomicrbiol J , 21 : 433 – 443 . [CSA] [CROSSREF]
  • Bryant , M P , Wolin , E A , Wolin , N J and Wolfe , R S . 1967 . Methanobacterium omelianskii, a symbiotic association of two species of bacteria . Arch Microbiol , 69 : 20 – 31 . [CSA]
  • Bubier , J L , Moore , T R , Bellisario , L , Comer , N T and Crill , P M . 1995 . Ecological controls on methane emissions from a northern peatland complex in the zone of discontinuous permafrost, Manitoba, Canada . Global Biogeochem Cycles , 9 : 455 – 470 . [CSA] [CROSSREF]
  • Bubier , J , Moore , T , Savage , K and Crill , P . 2005 . A comparison of methane flux in a boreal landscape between a dry and a wet year . Global Biogeochem Cycles , : 19 GB1023, doi:10.1029/2004GB002351[CSA]
  • Cadillo-Quiroz , H , Brauer , S , Yashiro , E , Sun , C , Yavitt , J and Zinder , S . 2006 . Vertical profiles of methanogenesis and methanogens in two contrasting acidic peatlands in central New York State, USA . Environ Microbiol , 8 : 1428 – 1440 . [INFOTRIEVE] [CSA] [CROSSREF]
  • Chandler , D P . 1998 . Redefining relativity: quantitative PCR at low template concentrations for industrial and environmental microbiology . J Ind Microbiol Biotechnol , 21 : 128 – 140 . [CSA] [CROSSREF]
  • Charman , D . 2002 . Peatlands and environmental change , 301 West Sussex , , United Kingdom : John Wiley & Sons .
  • Chasar , L S , Chanton , J P , Glaser , P H , Siegel , D I and Rivers , J S . 2000 . Radiocarbon and stable carbon isotopic evidence for transport and transformation of dissolved organic carbon, dissolved inorganic carbon, and CH4 in a northern Minnesota peatland . Global Biogeochem Cycles , 14 : 1095 – 1108 . [CSA] [CROSSREF]
  • Chin , K J , Lukow , T and Conrad , R . 1999 . Effect of temperature on structure and function of the methanogenic archaeal community in an anoxic rice field soil . Appl Environ Microbiol , 65 : 2341 – 2349 . [INFOTRIEVE] [CSA]
  • Clymo , R S and Pearce , D ME . 1995 . Methane and carbon dioxide production, transport through, and efflux from a peatland . Philos Trans R Soc Lond Ser A , 350 : 249 – 259 . [CSA]
  • Coles , J RP and Yavitt , J B . 2002 . Control of methane metabolism in a forested northern wetland, New York State, by aeration, substrates, and peat size fractions . Geomicrobiol J , 19 : 293 – 315 . [CSA] [CROSSREF]
  • Conrad , R . 2002 . Control of microbial methane production in wetland rice fields . Nutr Cycl Agroecosys , 64 : 59 – 69 . [CSA] [CROSSREF]
  • Fey , A and Conrad , R . 2000 . Effect of temperature on carbon and electron flow and on the archaeal community in methanogenic rice field soil . Appl Environ Microbiol , 66 : 4790 – 4797 . [INFOTRIEVE] [CSA] [CROSSREF]
  • Galand , P E , Fritze , H , Conrad , R and Yrjälä , K . 2005 . Pathways for methanogenesis and diversity of methanogenic archaea in three boreal peatland ecosystems . Appl Environ Microbiol , 71 : 2195 – 2198 . [INFOTRIEVE] [CSA] [CROSSREF]
  • Garcia , J L , Patel , B KC and Ollivier , B . 2000 . Taxonomic phylogenetic and ecological diversity of methanogenic Archaea . Anaerobe , 6 : 205 – 226 . [INFOTRIEVE] [CSA] [CROSSREF]
  • Gilichinsky , D and Wagener , S . 1995 . Microbial life in permafrost . Permafrost Periglac Process , 5 : 143 – 150 . [CSA]
  • Gorham , E and Janssens , J A . 2005 . The distribution and accumulation of chemical elements in five peat cores from the mid-continent to the eastern coast of North America . Wetlands , 22 : 259 – 278 . [CSA] [CROSSREF]
  • Hales , B A , Edwards , C , Ritchie , D A , Hall , G , Pickup , R W and Saunders , J R . 1996 . Isolation and identification of methanogen-specific DNA from blanket bog peat by PCR amplification and sequence analysis . Appl Environ Microbiol , 62 : 668 – 675 . [INFOTRIEVE] [CSA]
  • Halsey , L A , Vitt , D H and Zoltai , S C . 1995 . Disequilibrium response of permafrost in boreal continental western Canada to climate change . Clim Chang , 30 : 57 – 73 . [CSA] [CROSSREF]
  • Hoj , L , Olsen , R A and Torsvik , V L . 2005 . Archaeal communities in high Arctic wetlands Spitsbergen, Norway (78°N) as characterized by 16S rRNA gene fingerprinting . FEMS Microbiol Ecol , 53 : 89 – 101 . [INFOTRIEVE] [CSA] [CROSSREF]
  • Horn , M A , Matthies , C , Küsel , K , Schramm , A and Drake , H L . 2003 . Hydrogenotrophic methanogenesis by moderately acid-tolerant methanogens of a methane-emitting acidic peat . Appl Environ Microbiol , 69 : 74 – 83 . [INFOTRIEVE] [CSA] [CROSSREF]
  • Hughes , P D and Barber , K E . 2003 . Mire development across the fen-bog transition on the Teifi floodplain at Tregaron Bog, Ceredigion, Wales, and a comparison with 13 other raised bogs . J Ecol , 91 : 253 – 264 . [CSA] [CROSSREF]
  • Jarrell , K F and Kalmokoff , M L . 1988 . Nutritional requirements of the methanogenic archaebacteria . Can J Microbiol , 34 : 557 – 576 . [CSA]
  • Juottonen , H , Galand , P , Tuittila , E-S , Laine , J , Fritze , H and Yrjälä , K . 2005 . Methanogen communities and bacteria along an ecohydrological gradient in a northern raised bog complex . Environ Microbiol , 7 : 1547 – 1557 . [INFOTRIEVE] [CSA] [CROSSREF]
  • Jurgens , G . 2002 . Molecular phylogeny of Archaea in boreal forest soil, freshwater and temperate estuarine sediment , PhD Thesis University of Helsinki .
  • Kettunen , A , Kaitala , V , Lehtinen , A , Lohila , A , Alm , J , Silvola , J and Martikainen , P J . 1999 . Methane production and oxidation potentials in relation to water table fluctuations in two boreal mires . Soil Biol Biochem , 31 : 1741 – 1749 . [CSA] [CROSSREF]
  • Kotsyurbenko , O R . 2005 . Trophic interactions in the methanogenic microbial community of low-temperature terrestrial ecosystems . FEMS Micrbiol Ecol , 53 : 3 – 13 . [CSA] [CROSSREF]
  • Kotsyurbenko , O R , Chin , K-J , Glagolev , M V , Stubner , S , Simankova , M V , Nozhevnikova , A N and Conrad , R . 2004 . Acetoclastic and hydrogenotrophic methane production and methanogenic populations in an acidic West-Siberian peat bog . Environ Microbiol , 6 : 1159 – 1173 . [INFOTRIEVE] [CSA] [CROSSREF]
  • Lansdown , J P , Quay , P D and King , S L . 1992 . CH4 production via CO2 reduction in a temperate bog: a source of 13-C-depleted CH4 . Geochim Cosmochim Acta , 56 : 3493 – 3503 . [CSA] [CROSSREF]
  • Liblik , L , Moore , T , Bubier , J and Robinson , S . 1997 . Methane emissions from wetlands in the zone of discontinuous permafrost: Fort Simpson, Northwest Territories, Canada . Global Biogeochem Cycles , 11 : 485 – 494 . [CSA] [CROSSREF]
  • Lueders , T , Chin , K J , Conrad , R and Friedrich , M . 2001 . Molecular analyses of methyl-coenzyme M reductase alpha-submit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage . Environ Microbiol , 3 : 194 – 204 . [INFOTRIEVE] [CSA] [CROSSREF]
  • Maestrojuán , G M and Boone , D R . 1991 . Characterization of Methanosarcina barkeri MST and 227, Methanosarcina mazei S-6T, and Methanosarcina vacuolata Z-761T . Int J Syst Bacteriol , 41 : 267 – 274 . [CSA]
  • Maidak , B L , Cole , J R , Lilburn , T G and 7 other authors . 2001 . The RDP-II (Ribosomal Database Project) . Nucleic Acids Res , 29 : 173 – 174 . [INFOTRIEVE] [CSA] [CROSSREF]
  • Merila , P , Galand , P E , Fritze , H , Tuittila , E S , Kukko-Oja , K , Laine , J and Yrjala , K . 2006 . Methanogen communities along a primary succession transect of mire ecosystems . FEMS Microbiol Ecol , 55 : 221 – 229 . [INFOTRIEVE] [CSA] [CROSSREF]
  • Metje , M and Frenzel , P . 2005 . Effect of temperature on anaerobic ethanol oxidation and methanogenesis in acidic peat from a northern wetland . Appl Environ Microbiol , 71 : 8191 – 8200 . [INFOTRIEVE] [CSA] [CROSSREF]
  • Payette , S , Delwaide , A , Caccianiga , M and Beauchemin , M . 2004 . Accelerated thawing of subarctic peatland permafrost over the last 50 years . Geophys Res Let , 31 : 1 – 4 . [CSA] [CROSSREF]
  • Popp , T , Chanton , J P , Whiting , G P and Grant , N . 1999 . Methane stable isotope distribution at a Carex dominated fen in north central Alberta . Global Biogeochem Cycles , 13 : 1063 – 1077 . [CSA] [CROSSREF]
  • Rivkina , E , Gilichinsky , D , Wagener , S , Tiedje , J and McGrath , J . 1998 . Biogeochemical activity of anaerobic microorganisms from buried permafrost sediments . Geomicrobiol J , 15 : 187 – 193 . [CSA]
  • Russell , J B . 1992 . Another explanation for the toxicity of fermentation acids at low pH - anion accumulation versus uncoupling . J Appl Bacteriol , 73 : 363 – 370 . [CSA]
  • Sizova , M V , Panikov , N S , Tourova , T P and Flanagan , P W . 2003 . Isolation and characterization of oligotrophic acido-tolerant methanogenic consortia from a Sphagnum peat bog . FEMS Microbiol Ecol , 45 : 301 – 315 . [CSA] [CROSSREF]
  • Sundh , I , Nilsson , M , Granberg , G and Svensson , B H . 1994 . Depth distribution of microbial production and oxidation of methane in northern boreal peatlands . Microbial Ecol , 27 : 253 – 265 . [CSA] [CROSSREF]
  • Svensson , B H and Sundh , I . 1992 . Factors affecting methane production in peat soils . Suo , 43 : 183 – 190 . [CSA]
  • Turetsky , M R . 2005 . Decomposition and organic matter quality in continental peatlands: the ghost of permafrost past . Ecosystems , 7 : 740 – 750 . [CSA] [CROSSREF]
  • Turetsky , M R , Wieder , R K and Vitt , D H . 2002 . Boreal peatland C fluxes under varying permafrost regimes . Soil Biol Biochem , 34 : 907 – 912 . [CSA] [CROSSREF]
  • Turetsky , M R , Wieder , R K , Williams , C , Jendro , J and Vitt , D H . 2000 . Organic matter accumulation, peat chemistry, and permafrost melting in peatlands of boreal Alberta . Écoscience , 7 : 379 – 392 . [CSA]
  • Valentine , D W , Holland , E A and Schmiel , D S . 1994 . Ecosystem and physiological controls over methane production in northern wetlands . J Geophys Res , 99 : 1563 – 1571 . [CSA] [CROSSREF]
  • Vitt , D H , Halsey , L A and Zoltai , S C . 2000 . The changing landscape of Canada's western boreal forest: the current dynamics of permafrost . Can J For Res , 30 : 283 – 287 . [CSA]
  • Wagner , D , Lipski , A , Embacher , A and Gattinger , A . 2005 . Methane fluxes in permafrost habitats of the Lena Delta: effects of microbial community structure and organic matter quality . Environ Microbiol , 7 : 1582 – 1592 . [INFOTRIEVE] [CSA]
  • Westermann , P , Ahring , B K and Mah , R A . 1989 . Threshold Acetate Concentrations for Acetate Catabolism by Aceticlastic Methanogenic Bacteria . Appl Environ Microbiol , 55 : 514 – 515 . [INFOTRIEVE] [CSA]
  • Widdel , F , Rouviere , P E and Wolfe , R S . 1988 . Classification of secondary alcohol-utilizing methanogens including a new thermophilic isolate . Arch Microbiol , 150 : 477 – 481 . [CSA] [CROSSREF]
  • Wilson , K H , Blitchington , R B and Greene , R C . 1990 . Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction . J Clin Microbial , 28 : 1942 – 1946 . [CSA]
  • Yavitt , J B , Williams , C J and Wieder , R K . 1997 . Production of methane and carbon dioxide in peatland ecosystems across North America: effects of temperature, aeration, and organic chemistry of peat . Geomicrobiol J , 14 : 299 – 316 . [CSA]
  • Yavitt , J B , Williams , C J and Wieder , R K . 2005 . Soil chemistry versus environmental controls on production of CH4 and CO2 in northern peatlands . Eur J Soil Sci , 56 : 169 – 178 . [CSA] [CROSSREF]
  • Zellner , G and Winter , J . 1987 . Secondary alcohols as hydrogen donors for CO2-reduction by methanogens . FEMS Microbiol Lett , 44 : 323 – 328 . [CSA]
  • Zinder , S H . 1993 . “ Physiological ecology of methanogens ” . In Methanogenesis: Ecology, Physiology, Biochemistry, and Genetics , Edited by: Ferry , J G . 128 – 206 . New York : Chapman and Hall .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.