Methanogen Diversity in Deep Subsurface Gas-Associated Water at the Minami-Kanto Gas Field in Japan

REFERENCES

• Altschul , S F , Madden , T L , Schaffer , A A , Zhang , J , Zhang , Z , Miller , W and Lipman , D J . 1997 . Gapped BLAST and PSI-BLAST: a new generation of protein database search programs . Nucleic Acids Res , 25 : 3389 – 3402 .
   PubMed Web of Science ®Google Scholar
• Belyayev , S S , Laurinavichus , K S and Gaytan , V I . 1977 . Modern microbiological formation of methane in the Quaternary and Pliocene rocks of the Caspian depression . Geochem Int , : 172 – 176 .
   Google Scholar
• Bernard , B B , Brooks , J M and Sackett , W M . 1977 . A geochemical model for characterization of hydrocarbon gas sources in marine sediments . Proc Offshore Technol Conf , : 435 – 438 .
   Google Scholar
• Doddema , H J and Vogels , G D . 1978 . Improved identification of methanogenic bacteria by fluorescence microscopy . Appl Environ Microbiol , 36 : 752 – 754 .
   PubMed Web of Science ®Google Scholar
• Galand , P E , Fritze , H and Yrjala , K . 2003 . Microsite-dependent changes in methanogenic populations in a boreal oligotrophic fen . Environ Microbiol , 5 : 1133 – 1143 .
   PubMed Web of Science ®Google Scholar
• Grabowski , A , Nercessian , O , Fayolle , F , Blanchet , D and Jeanthon , C . 2005 . Microbial diversity in production waters of a low-temperature biodegraded oil reservoir . FEMS Microbiol Ecol , 54 : 427 – 443 .
   PubMed Web of Science ®Google Scholar
• Gunsalus , R P , Romesser , J A and Wolfe , R S . 1978 . Preparation of coenzyme M analogs and their activity in the methyl coenzyme M reductase system of Methanobacterium thermoautotrophicum . Biochemistry , 17 : 2374 – 2377 .
   PubMed Web of Science ®Google Scholar
• Hobbie , J E , Daley , R J and Jasper , S . 1977 . Use of Nuclepore filters for counting bacteria by fluorescence microscopy . Appl Environ Microbiol , 33 : 1225 – 1228 .
   PubMed Web of Science ®Google Scholar
• Hordijk , C A , Kamminga , H and Cappenberg , T E . 1994 . Kinetic studies of acetate in freshwater sediments: Use of stable isotopic tracers . Geochim Cosmochim Acta , 58 : 683 – 694 .
   Web of Science ®Google Scholar
• Huang , L N , Chen , Y Q , Zhou , H , Luo , S , Lan , C Y and Qu , L H . 2003 . Characterization of methanogenic Archaea in the leachate of a closed municipal solid waste landfill . FEMS Microbiol Ecol , 46 : 171 – 177 .
   PubMed Web of Science ®Google Scholar
• Igari , S I and Sakata , S . 1989 . Origin of natural-gas of dissolved-in-water type in Japan inferred from chemical and isotopic compositions-occurrence of dissolved-gas of thermogenic origin . Geochem J , 23 : 139 – 142 .
   Web of Science ®Google Scholar
• Imachi , H , Sekiguchi , Y , Kamagata , Y , Loy , A , Qiu , Y L , Hugenholtz , P , Kimura , N , Wagner , M , Ohashi , A and Harada , H . 2006 . Non-sulfate-reducing, syntrophic bacteria affiliated with desulfotomaculum cluster I are widely distributed in methanogenic environments . Appl Environ Microbiol , 72 : 2080 – 2091 .
   PubMed Web of Science ®Google Scholar
• Japan Natural Gas Association . 2004 . Tennengas (in Japanese) , 47 : 84
   Google Scholar
• Jeanmougin , F , Thompson , J D , Gouy , M , Higgins , D G and Gibson , T J . 1998 . Multiple sequence alignment with Clustal X . Trends Biochem Sci , 23 : 403 – 405 .
   PubMed Web of Science ®Google Scholar
• Kaneko , N , Maekawa , T and Igari , S . 2002 . Generation of archaeal methane and its accumulation mechanism into interstitial water . J Jpn Assoc Pet Tech , 67 : 97 – 110 .
   Google Scholar
• Krumholz , L R , Mckinley , J P , Ulrich , G A and Suflita , J M . 1997 . Confined subsurface microbial communities in Cretaceous rock . Nature , 386 : 64 – 66 .
   Web of Science ®Google Scholar
• Kunisue , S , Mita , I and Waki , F . 2002 . Relationship between subsurface geology and productivity of natural gas and iodine in the Mobara gas field, Boso Peninsula, central Japan . J Jpn Assoc Pet Tech , 67 : 83 – 96 .
   Google Scholar
• Kvenvolden , K A . 1995 . A review of the geochemistry of methane in natural gas hydrate . Org Geochem , 23 : 997 – 1008 .
   Web of Science ®Google Scholar
• Magot , M , Ollivier , B and Patel , B KC . 2000 . Microbiology of petroleum reservoirs . Anton Leeuw Int J G , 77 : 103 – 116 .
   PubMed Web of Science ®Google Scholar
• Marchesi , J R , Weightman , A J , Cragg , B A , Parkes , R J and Fry , J C . 2001 . Methanogen and bacterial diversity and distribution in deep gas hydrate sediments from the Cascadia Margin as revealed by 16S rRNA molecular analysis . FEMS Microb Ecol , 34 : 221 – 228 .
   PubMed Web of Science ®Google Scholar
• Newberry , C J , Webster , G , Cragg , B A , Parkes , R J , Weightman , A J and Fry , J C . 2004 . Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190 . Environ Microbiol , 6 : 274 – 287 .
   PubMed Web of Science ®Google Scholar
• Noble , R A and Henk , F H . 1998 . Hydrocarbon charge of a bacterial gas field by prolonged methanogenesis: An example from the East Java Sea, Indonesia . Org Geochem , 29 : 301 – 314 .
   Web of Science ®Google Scholar
• Orphan , V J , Taylor , L T , Hafenbradl , D and Delong , E F . 2000 . Culture-dependent and culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs . Appl Environ Microbiol , 66 : 700 – 711 .
   PubMed Web of Science ®Google Scholar
• Reed , D W , Fujita , Y , Delwiche , M E , Blackwelder , D B , Sheridan , P P , Uchida , T and Colwell , F S . 2002 . Microbial communities from methane hydrate-bearing deep marine sediments in a forearc basin . Appl Environ Microbiol , 68 : 3759 – 3770 .
   PubMed Web of Science ®Google Scholar
• Rice , D D . 1992 . “ Controls, habitat, and resource potential of ancient bacterial gas ” . In Bacterial Gas , Edited by: Vially , R . 91 – 118 . Paris : Éditions Technip .
   Google Scholar
• Saito , N and Nei , M . 1987 . The neighbor-joining method: a new method for reconstructing phylogenetic trees . Mol Biol Evol , 4 : 406 – 425 .
   PubMed Web of Science ®Google Scholar
• Sakai , H , Gamo , T , Ogawa , Y and Boulegue , J . 1992 . Stable isotopic-ratios and origins of the carbonates associated with cold seepage at the Eastern Nankai Trough . Earth Planet Sci Lett , 109 : 391 – 404 .
   Web of Science ®Google Scholar
• Sakata , S , Sano , Y , Maekawa , T and Igari , S I . 1997 . Hydrogen and carbon isotopic composition of methane as evidence for biogenic origin of natural gases from the Green Tuff basin, Japan . Org Geochem , 26 : 399 – 407 .
   Web of Science ®Google Scholar
• Schoell , M . 1980 . The hydrogen and carbon isotopic composition of methane from natural gases of various origins . Geochim Cosmochim Acta , 44 : 649 – 661 .
   Web of Science ®Google Scholar
• Somerville , C C , Knight , I T , Straube , W L and Colwell , R R . 1989 . Simple, rapid method for direct isolation of nucleic-acids from aquatic environments . Appl Environ Microbiol , 55 : 548 – 554 .
   PubMed Web of Science ®Google Scholar
• Sudo , Y . 1967 . Geochemical study of brine from oil and gas fields in Japan . J Jpn Assoc Pet Tech , 32 : 30 – 40 .
   Google Scholar
• Sugisaki , R , Yoshimoto , T , Kato , K and Sugiura , T . 1963 . Geochemical study of the Southern Kanto Gas producing region . Jour Geol Soc Japan , 69 : 67 – 81 .
   Google Scholar
• Takai , K , Moser , D P , De Flaun , M , Onstott , T C and Fredrickson , J K . 2001 . Archaeal diversity in waters from deep South African gold mines . Appl Environ Microbiol , 67 : 5750 – 5760 .
   PubMed Web of Science ®Google Scholar
• Uyeda , S . 1972 . Crust and upper mantle of the Japanese area, part I . Earthquake Res Instit , : 97 – 105 .
   Google Scholar
• Weisburg , W G , Barns , S M , Pelletier , D A and Lane , D J . 1991 . 16S ribosomal DNA amplification for phylogenetic study . J Bacteriol , 173 : 697 – 703 .
   PubMed Web of Science ®Google Scholar
• Wellsbury , P , Goodman , K , Barth , T , Cragg , B A , Barnes , S P and Parkes , R J . 1997 . Deep marine biosphere fuelled by increasing organic matter availability during burial and heating . Nature , 388 : 573 – 576 .
   Web of Science ®Google Scholar
• Wellsbury , P and Parkes , R J . 1995 . Acetate bioavailability and turnover in an estuarine sediment . FEMS Microb Ecol , 17 : 85 – 94 .
   Web of Science ®Google Scholar
• Whiticar , M J , Faber , E and Schoell , M . 1986 . Biogenic methane formation in marine and freshwater environments: CO2 reduction vs. acetate fermentation-isotope evidence . Geochim Cosmochim Acta , 50 : 693 – 709 .
   Web of Science ®Google Scholar