Hydrogenase Activity in Deeply Buried Sediments of the Arctic and North Atlantic Oceans

REFERENCES

• Adams , M WW . 1990 . The structure and mechanism of iron-hydrogenases . Biochim Biophys Acta , 1020 : 115 – 145 .
   PubMed Web of Science ®Google Scholar
• Arnosti , C and J⊘rgensen , B B . 2003 . High activity and low temperature optima of extracellular enzymes in Arctic sediments: implications for carbon cycling by heterotrophic microbial communities . Mar Ecol Prog Ser , 249 : 15 – 24 .
   Web of Science ®Google Scholar
• Backman , J , Moran , K , McInroy , D B , Mayer , L A and the Expedition 302 Scientists . 2006 . Proceedings of the Integrated Ocean Drilling Program, Volume 302: College Station, TX (Integrated Ocean Drilling Program Management International, Inc.) doi:10.2204/iodp.proc.302.102.2006
   Google Scholar
• Biddle , J F , Lipp , J S , Lever , M A , Lloyd , K G , Sorensen , K B , Anderson , R , Fredrick , H F , Elvert , M , Kelly , T J , Schrag , D P , Sogin , M L , Brenchley , J E , Teske , A , House , C H and Hinrichs , K-U . 2006 . Heterotrophic Archaea dominate sedimentary subsurface ecosystems off Peru . Proc Natl Acad Sci , 103 : 3846 – 3851 .
   PubMed Web of Science ®Google Scholar
• Cypionka , H. , Engelen , B , Sass , K and O. L. S. S. P. 2002 . Novel approaches to the cultivation of marine sediment bacteria . Geochim Cosmochim Acta , 66 : A161 – A161 .
   Google Scholar
• D'Hondt , S , J⊘rgensen , B B , Miller , D J , Batzke , A , Blake , R , Cragg , B A , Cypionka , H , Dickens , G R , Ferdelman , T , Hinrichs , K-U , Holm , N G , Mitterer , R , Spivack , A , Wang , G , Bekins , B , Engelen , B , Ford , K , Gettemy , G , Rutherford , S D , Sass , H , Skilbeck , C G , Aiello , I W , Guèrin , G , House , C H , Inagaki , F , Meister , P , Naehr , T , Niitsuma , S , Parkes , R J , Schippers , A , Smith , D C , Teske , A , Wiegel , J , Naranjo Padilla , C and Solis Acosta , J L . 2004 . Distribution of microbial activities in deep subseafloor sediments . Science , 306 : 2216 – 2221 .
   PubMed Web of Science ®Google Scholar
• D'Hondt , S , Rutherford , S and Spivack , A J . 2002 . Metabolic activity of subsurface life in deep-sea sediments . Science , 295 : 2067 – 2070 .
   PubMed Web of Science ®Google Scholar
• Deming , J W and Baross , J A . 1993 . “ The early diagenesis of organic matter: bacterial activity ” . In Organic Geochemistry , Edited by: Engel , M H and Macko , S A . 119 – 144 . New York : Plenum Press .
   Google Scholar
• Ferdelman , T G , Kano , A , Williams , T and Henriet J-P, the Expedition 307 Scientists . 2006 . Proceedings of the Integrated Ocean Drilling Program, Volume 307: Washington, DC (Integrated Ocean Drilling Program Management International, Inc.) doi:10.2204/iodp.proc.307.101.2006
   Google Scholar
• Goodwin , S , Conrad , R and Zeikus , G J . 1988 . Influence of pH on microbial hydrogen metabolism in diverse sedimentary ecosystems . Appl Environ Microbiol , 54 ( 2 ) : 590 – 593 .
   PubMedGoogle Scholar
• Häring , V and Conrad , R . 1994 . Demonstration of two different H2-oxidizing activities in soil using an H2 consumption and a tritium exchange assay . Biol Fertil Soils , 17 : 125 – 128 .
   Google Scholar
• Häring , V , Klüber , H D and Conrad , R . 1994 . Localization of atmospheric H2-oxidizing soil hydrogenases in different particle fractions of soil . Biol Fertil Soils , 18 : 109 – 114 .
   Google Scholar
• Hoeler , T M , Alperin , M J , Albert , D B and Martens , C S . 1998 . Thermodynamic control on H2 concentrations in an anoxic marine sediment . Geochim Cosmochim Acta , 62 : 1745 – 1756 .
   Google Scholar
• Inagaki , F , Nunoura , T , Nakagawa , S , Teske , A , Lever , M A , Lauer , A , Suzuki , M , Takai , K , Delwiche , M , Colwell , F S , Nealson , K H , Horikoshi , K , D'Hondt , S and Jorgensen , B B . 2006 . Biogeographical distribution and diversity of microbes in methane hydrate-bearing deep marine sediments, on the Pacific Ocean Margin . Proc Natl Acad Sci , 103 : 2815 – 2820 .
   PubMed Web of Science ®Google Scholar
• Kallmeyer , J , Smith , D C , Spivack , A J and D'Hondt , S . 2008 . New cell extraction procedure applied to deep subsurface sediments . Limnol Oceanogr Meth , 6 : 236 – 245 .
   Web of Science ®Google Scholar
• Lovley , D R and Goodwin , S . 1988 . Hydrogen concentrations as an indicator of the predominant terminal electron-accepting reactions in aquatic sediments . Geochim Cosmochim Acta , 52 : 2993 – 3003 .
   Web of Science ®Google Scholar
• Lovley , D R and Klug , M J . 1982 . Intermediary metabolism of organic matter in the sediments of a eutrophic lake . Appl Environ Microbiol , 43 : 552 – 560 .
   PubMed Web of Science ®Google Scholar
• Lupton , F S and Zeikus , G J . 1984 . Physiological basis for sulfate dependent hydrogen competition between sulfidogens and methanogens . Curr Microbiol , 11 : 7 – 12 .
   Google Scholar
• Parkes , R J , Cragg , B A and Wellsbury , P . 2000 . Recent studies of bacterial populations and processes in subseafloor sediments: A review . Hydrogeol J , 8 : 11 – 28 .
   Web of Science ®Google Scholar
• Schink , B , Lupton , F S and Zeikus , J G . 1983 . Radioassay for hydrogenase activity in viable cells and documentation of aerobic hydrogen-consuming bacteria living in extreme environments . Appl Environ Microbiol , 45 : 1491 – 1500 .
   PubMed Web of Science ®Google Scholar
• Schink , B and Zeikus , J G . 1984 . Ecology of aerobic hydrogen-oxidizing bacteria in two freshwater lake ecosystems . Can J Microbiol , 30 : 260 – 265 .
   Web of Science ®Google Scholar
• Smith , D C and D'Hondt , S . 2006 . Exploration of life in deep subseafloor sediments . Oceanography , 19 : 58 – 70 .
   Google Scholar
• Soffientino , B , Spivack , A J , Smith , D C , Roggenstein , E B and D'Hondt , S . 2006 . A versatile and sensitive tritium-based radioassay for measuring hydrogenase activity in aquatic sediments . J Microbiol Meth , 66 : 136 – 146 .
   PubMed Web of Science ®Google Scholar
• Suß , J , Engelen , B , Cypionka , H and Sass , H . 2004 . Quantitative analysis of bacterial communities from Mediterranean sapropels based on cultivation-dependent methods . FEMS Microbiol Ecol , 51 : 109 – 121 .
   PubMed Web of Science ®Google Scholar
• Vignais , P M , Billoud , B and Meyer , J . 2001 . Classification and phylogeny of hydrogenases . FEMS Microbiol Rev , 25 : 455 – 501 .
   PubMed Web of Science ®Google Scholar
• Wolin , M J . 1982 . “ Hydrogen transfer in microbial communities ” . In Microbial Interactions and Communities, Vol 1 , Edited by: Bull , A T and Slater , J H . New York : Academic Press Inc .
   Google Scholar
• Zeikus , J G . 1977 . The biology of methanogenic bacteria . Bacteriol Rev , 41 : 514 – 541 .
   PubMedGoogle Scholar