Biomarkers of Endolithic Communities within Gypsum Crusts (Southern Tunisia)

REFERENCES

• Albrecht , M , Steiger , S and Sandmann , G . 2001 . Expression of a ketolase gene mediates the synthesis of canthaxanthin in Synechococcus leading to tolerance against photoinhibition, pigment degradation and UV-B sensitivity of photosynthesis . Photochem Photobiol , 73 : 551 – 555 .
   PubMed Web of Science ®Google Scholar
• Altschul , S F , Madden , T L , Schaffer , A A , Zhang , J , Zhang , Z , Miller , W and Lipman , D J . 1997 . Gapped BLAST and PSI-BLAST: a new generation of protein database search programs . Nucl Acids Res , 25 : 3389 – 3402 .
   PubMed Web of Science ®Google Scholar
• Ben , H aj , Ali , M , Jedoui , Y , Dali , T , Ben Salem , H and Memmi , L . 1987 . Carte géologique de la Tunisie 1:500,000 - République Tunisienne, Ministère de l'économie nationale, Office national des mines, Département de la géologie, Service géologique national
   Google Scholar
• Bibring , J P , Arvidson , R E , Gendrin , A , Gondet , B , Langevin , Y , Le Mouelic , S , Mangold , N , Morris , R V , Mustard , J F , Poulet , F , Quantin , C and Sotin , C . 2007 . Coupled ferric oxides and sulfates on the Martian surface . Science , 317 : 1206 – 1210 .
   PubMed Web of Science ®Google Scholar
• Boison , G , Mergel , A , Jolkver , H and Bothe , H . 2004 . Bacterial life and dinitrogen fixation at gypsum rock . Appl Environ Microbiol , 70 : 7070 – 7077 .
   PubMed Web of Science ®Google Scholar
• Bonilla , S , Villeneuve , V and Vincent , W F . 2005 . Benthic and planktonic algal communities in a high arctic lake: pigment structure and contrsting responses to nutrient enrichment . J Phycol , 41 : 1120 – 1130 .
   Web of Science ®Google Scholar
• Büdel , B . 1999 . Ecology and diversity of rock-inhabiting cyanobacteria in tropical regions . Eur J Phycol , 34 : 361 – 370 .
   Web of Science ®Google Scholar
• Cockell , C S . 2000 . The ultraviolet history of the terrestrial planet-implications for biological evolution . Planet Space Sci , 48 : 203 – 214 .
   Web of Science ®Google Scholar
• Cockell , C S , Lee , P , Osinski , G , Horneck , G and Broady , P . 2002 . Impact-induced microbial endolithic habitats . Meteorit Planet Sci , 37 : 1287 – 1298 .
   Web of Science ®Google Scholar
• Cockell , C S , McKay , C P , Warren-Rhodes , K and Horneck , G . 2008 . Ultraviolet radiation-induced limitation to epilithic microbial growth in arid deserts- Dosimetric experiments in the hyperarid core of the Atacama Desert . J Photochem Photobiol B: Biol , 90 : 79 – 87 .
   PubMed Web of Science ®Google Scholar
• de Groot , A , Chapon , V , Servant , P , Christen , R , Saux , M F , Sommer , S and Heulin , T . 2005 . Deinococcus deserti sp. nov., a gamma-radiation-tolerant bacterium isolated from the Sahara Desert . Int J Syst Evol Microbiol , 55 : 2441 – 2446 .
   PubMed Web of Science ®Google Scholar
• de la Torre , J R , Goebel , B M , Friedmann , E I and Pace , N R . 2003 . Microbial diversity of cryptoendolithic communities from the McMurdo Dry Valleys, Antarctica . Appl Environ Microbiol , 69 : 3858 – 3867 .
   PubMed Web of Science ®Google Scholar
• Dong , H , Rech , J A , Jiang , H , Sun , H and Buck , B J . 2007 . Endolithic cyanobacteria in soil gypsum: Occurrences in Atacama (Chile), Mojave (United States), and Al-Jafr Basin (Jordan) Deserts . J Geophys Res , 112 : G02030
   Web of Science ®Google Scholar
• Drake , N A , Eckardt , F D and White , K H . 2004 . Sources of sulphur in gypsiferous sediments and crusts and pathways of gypsum redistribution in southern Tunisia . Earth Surf Proc Landforms , 29 : 1459 – 1471 .
   Web of Science ®Google Scholar
• Edgar , R C . 2004 . MUSCLE: multiple sequence alignment with high accuracy and high throughput . Nucl Acids Res , 32 : 1792 – 1797 .
   PubMed Web of Science ®Google Scholar
• Edwards , J S and Battista , J R . 2003 . Using DNA microarray data to understand the ionizing radiation resistance of Deinococcus radiodurans . Trends Biotechnol , 21 : 381 – 382 .
   PubMed Web of Science ®Google Scholar
• Ehling-Schulz , M , Bilger , W and Scherer , S . 1997 . UV-B-induced synthesis of photoprotective pigments and extracellular polysaccharides in the terrestrial cyanobacterium Nostoc commune . J Bacteriol , 179 : 1940 – 1945 .
   PubMed Web of Science ®Google Scholar
• Ehling-Schulz , M and Scherer , S . 1999 . UV protection in cyanobacteria . Eur J Phycol , 34 : 329 – 338 .
   Web of Science ®Google Scholar
• Elster , J , Lukesová , A , Svoboda , J and Kopecky , J . 1999 . Diversity and abundance of soil algae in the polar desert, Sverdrup Pass, central Ellesmere Island . Polar Rec , 35a : 231 – 251 .
   Google Scholar
• Falkowski , P G and Raven , J A . 1997 . Aquatic Photosynthesis , 375 Malden, MA : Blackwell Science .
   Google Scholar
• Foyer , C H and Mullineaux , P M . 1994 . Causes of Photooxidative Stress and Ameriolation of Defense Systems in Plants , 395 Boca Raton, FL : CRC Press .
   Google Scholar
• Friedmann , E I and Ocampo , R . 1976 . Endolithic blue-green algae in the Dry Valley: primary producers in the Antarctic desert ecosystem . Science , 193 : 1247 – 1249 .
   PubMed Web of Science ®Google Scholar
• Friedmann , E I . 1982 . Endolithic microorganisms in the Antarctic cold desert . Science , 215 : 1045 – 1053 .
   PubMed Web of Science ®Google Scholar
• Garcia Costas , A M , Graham , J E and Bryant , D A . 2007 . “ Ketocarotenoids in chlorosomes of the acidobacterium Candidatus Chloracidobacterium thermophilum ” . In Photosynthesis , Edited by: Allen , J F , Gantt , E , Golbeck , J H and Osmond , B . 1161 – 1164 . Dordrecht, , The Netherlands : Springer . Energy from the Sun: 14th International Congress on Photosynthesis
   Google Scholar
• Gray , D A , Lewis , L A and Cardon , Z G . 2007 . Photosynthetic recovery following desiccation of desert green algae (Chlorophyta) and their aquatic relatives . Plant Cell Environ , 30 : 1240 – 1255 .
   PubMed Web of Science ®Google Scholar
• Grabowski , B , Cunningham , F X Jr and Gantt , E . 2001 . Chlorophyll and carotenoid binding in a simple red algal light-harvesting complex crosses phylogenetic lines . Proc Natl Acad Sci , 98 : 2911 – 2916 .
   PubMed Web of Science ®Google Scholar
• Griffes , J L , Arvidson , R E , Poulet , F and Gendrin , A . 2007 . Geologic and spectral mapping of etched terrain deposits in northern Meridiani Planum . J Geophys Res , 112 : E08S09
   Web of Science ®Google Scholar
• Hirsch , P , Mevs , U , Kroppenstedt , R M , Schumann , P and Stackebrandt , E . 2004 . Cryptoendolithic actinomycetes from antarctic sandstone rock samples: Micromonospora endolithica sp. nov. and two isolates related to Micromonospora coerulea Jensen 1932 . Syst Appl Microbiol , 27 : 166 – 174 .
   PubMed Web of Science ®Google Scholar
• Hirschberg , J and Chamovitr , D . 1994 . “ Carotenoids in cyanobacteria ” . In Advances in Photosynthesis: The Molecular Biology of the Cyanobacteria , Edited by: Bryant , D A . 474 – 495 . Dordrecht : Kluwer Academic Publishing .
   Google Scholar
• Horath , T , Neu , T R and Bachofen , R . 2006 . An Endolithic Microbial Community in Dolomite Rock in Central Switzerland: Characterization by Reflection Spectroscopy, Pigment Analyses, Scanning Electron Microscopy, and Laser Scanning Microscopy . Microb Ecol Springer New York , 5 : 353 – 364 .
   Web of Science ®Google Scholar
• Hughes , K A and Lawley , B . 2003 . A novel Antarctic microbial endolithic community within gypsum crusts . Environ Microbiol , 5 : 555 – 565 .
   PubMed Web of Science ®Google Scholar
• Ivanov , A G , Miskiewicz , E , Clarke , A K , Greenberg , B M and Huner , N PA . 2000 . Protection of photosystem II against UV-A and UV-B radiation in the cyanobacterium Plectonema boryanum: the role of growth temperature and growth irradiance . Photochem Photobiol , 72 : 772 – 779 .
   PubMed Web of Science ®Google Scholar
• Jobb , G , von Haeseler , A and Strimmer , K . 2004 . TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics . BMC Evol Biol , 4 : 18
   PubMed Web of Science ®Google Scholar
• Kuhl , M , Chen , M , Ralph , P J , Schreiber , U and Larkum , A W . 2005 . A niche for cyanobacteria containing chlorophyll d . Nature , 433 : 820
   PubMed Web of Science ®Google Scholar
• Langevin , Y , Poulet , F , Bibring , J P and Gondet , B . 2005 . Sulfates in the North Polar region of Mars detected by OMEGA/Mars Express . Science , 307 : 1584 – 1586 .
   PubMed Web of Science ®Google Scholar
• Lakotos , M , Bilger , W and Budel , B . 2001 . Carotenoids composition of terrestrial cyanobacteria: response to natural light conditions in open rock habitats in Venezuela . Eur J Phycol , 36 : 367 – 375 .
   Web of Science ®Google Scholar
• Lao , K and Glazer , A N . 1996 . Ultraviolet-B photodestruction of a light harvesting complex . Proc Natl Acad Sci USA , 93 : 5258 – 5263 .
   PubMed Web of Science ®Google Scholar
• Lawlor , D W . 2001 . Photosynthesis, , 3rd ed. , 386 Oxford : Bios Scientific Publishers .
   Google Scholar
• Leisner , J MR , Bilger , W , Czygan , F C and Lange , O L . 1993 . Lipophilous carotenoids of cyanobacterial lichens from different habitats, including an extreme desert site . Crypt Bot , 4 : 74 – 82 .
   Google Scholar
• Lüttge , U . 1997 . Cyanobacterial tintenstrich communities and their ecology . Naturwissenschaften , 84 : 526 – 534 .
   Web of Science ®Google Scholar
• Mackey , M D , Mackey , D J , Higgins , H W and Wright , S . 1996 . CHEMTAX—A program for estimating class abundances from chemical markers: application to HPLC measurements of phytoplankton . Mar Ecol Prog Ser , 144 : 265 – 283 .
   Web of Science ®Google Scholar
• Millie , D F , Greene , D A and Dionigi , C P . 1990 . Pigment and photosynthetic responses of Oscillatoria agardhii (Cyanophyta) to photon flux density and spectral quality . J Phycol , 26 : 658 – 664 .
   Web of Science ®Google Scholar
• Millie , D F , Paerl , H W and Hurley , J P . 1993 . Microalgal pigment assessments using high-performance liquid chromatography: A synopsis of organismal and ecological applications . Can J Fish Aquat Sci , 50 : 2513 – 2526 .
   Web of Science ®Google Scholar
• Mueller , D R , Vincent , W F , Bonilla , S and Laurion , I . 2005 . Extremotrophs, extremophiles and broadband pigmentation strategies in a high arctic ice shelf ecosystem . FEMS Microbiol Ecol , 53 : 73 – 87 .
   PubMed Web of Science ®Google Scholar
• Narumi , I . 2003 . Unlocking radiation resistance mechanisms: still a long way to go . Trends Microbiol , 11 : 422 – 425 .
   PubMed Web of Science ®Google Scholar
• Norris , T B and Castenholz , R W . 2006 . Endolithic photosynthetic communities within ancient and recent travertine deposits in Yellowstone National Park . FEMS Microbiol Ecol , 57 : 470 – 483 .
   PubMed Web of Science ®Google Scholar
• Oren , A , Kuhl , M and Karsten , U . 1995 . An endoevaporitic microbial mat within a gypsum crust: zonation of phototrophs, photopigments, and light penetration . Marine Ecol Prog Ser , 128 : 151 – 159 .
   Web of Science ®Google Scholar
• Overmann , J , Sandmann , G , Hall , K J and Northcote , T G . 1993 . Fossil carotenoids and paleolimnology of meromictic Mahoney Lake, British Columbia, Canada . Aquat Sci , 55 : 31 – 39 .
   Web of Science ®Google Scholar
• Paerl , H , Tucker , J and Bland , P . 1983 . Carotenoid enhancement and its role in maintaining blue-green algal (Microcystis aeruginosa) surface blooms . Limnol Oceanogr , 28 : 847 – 857 .
   Web of Science ®Google Scholar
• Potts , M . 1999 . Mechanisms of desiccation tolerance in cyanobacteria . Eur J Phycol , 34 : 319 – 328 .
   Web of Science ®Google Scholar
• Pandey , R , Chauhan , S and Singhal , G . 1997 . UVB-induced photodamage to phycobilisomes of Synechococcus sp. PCC 7942 . J Photochem Photobiol B: Biol , 40 : 228 – 232 .
   PubMed Web of Science ®Google Scholar
• Parnell , J , Lee , P , Cockell , C S and Osinski , G R . 2004 . Microbial colonization in impact-generated hydrothermal sulphate deposits, Haughton impact structure, and implications for sulphates on Mars . Int J Astr , 3 : 247 – 256 .
   Web of Science ®Google Scholar
• Philippe , H . 1993 . MUST, a computer package of Management Utilities for Sequences and Trees . Nucl Acids Res , 21 : 5264 – 5272 .
   PubMed Web of Science ®Google Scholar
• Pinckey , J L , Millie , D F , Howe , K E , Paerl , H W and Hurley , J P . 1996 . Flow scintillation counting of 14C-labeled microalgal photosynthetic pigments . J Plank Res , 18 : 1867 – 1810 .
   Web of Science ®Google Scholar
• Pointing , S B , Warren-Rhodes , K A , Lacap , D C , Rhodes , K L and McKay , C P . 2007 . Hypolithic community shifts occur as a result of liquid water availability along environmental gradients in China's hot and cold hyperarid deserts . Environ Microbiol , 9 : 414 – 424 .
   PubMed Web of Science ®Google Scholar
• Poulet , F , Arvidson , R E , Gomez , C , Morris , R V , Bibring , J P , Langevin , Y , Gondet , B and Griffes , J . 2008 . Mineralogy of Terra Meridiani and western Arabia Terra from OMEGA/MEx and implications for their formation . Icarus , 195 : 106 – 130 .
   Web of Science ®Google Scholar
• Rainey , F A , Ray , K , Ferreira , M , Gatz , B Z , Nobre , M F Bagaley , D . 2005 . Extensive diversity of ionizing-radiation-resistant bacteria recovered from Sonoran Desert soil and description of nine new species of the genus Deinococcus obtained from a single soil sample . Appl Environ Microbiol , 71 : 5225 – 5235 .
   PubMed Web of Science ®Google Scholar
• Rascher , U WW , Lakatos , M and Büdel , B . 2003 . Photosynthetic field capacity of cyanobacteria of a tropical inselberg of the Guiana Highlands . Eur J Phycol , 38 : 247 – 256 .
   Web of Science ®Google Scholar
• Roberts , C R and Mitchell , C W . 1987 . “ Spring mounds in southern Tunisia ” . In Desert Sediments: Ancient and Modern , Edited by: Frostick , L and Reid , I . 321 – 334 . Geol Soc London . Spec Publ 35
   Google Scholar
• Sajilata , M G , Singhal , R S and Kamat , M Y . 2008 . The carotenoid pigment zeaxanthin—a review . Comp Rev Food Sci Food Saf , 7 : 29 – 49 .
   Web of Science ®Google Scholar
• Schagerl , M and Müeller , B . 2006 . Acclimation of chlorophyll a and carotenoid levels to different irradiances in four freshwater cyanobacteria . J Plant Physiol , 163 : 709 – 716 .
   PubMed Web of Science ®Google Scholar
• Sigler , W V , Bachofen , R and Zeyer , J . 2003 . Molecular characterization of endolithic cyanobacteria inhabiting exposed dolomite in central Switzerland . Environ Microbiol , 5 : 618 – 627 .
   PubMed Web of Science ®Google Scholar
• Squyres , S W , Arvidson , R E Bell , J F III . 2004 . The Spirit Rover's Athena Science Investigation at Gusev crater, Mars . Science , 35 : 794 – 799 .
   Web of Science ®Google Scholar
• Stivaletta , N and Barbieri , R . 2008 . “ Endoliths in terrestrial arid environments: implications for astrobiology ” . In From Fossils to Astrobiology , Edited by: Seckbach , J and Walsh , M . 319 – 333 . Springer-Verlag .
   Google Scholar
• Stivaletta , N and Barbieri , R . 2009 . Endolithic microorganisms from spring mound evaporite deposits (southern Tunisia) . J Arid Environ , 73 : 33 – 39 .
   Web of Science ®Google Scholar
• Vaniman , D T , Bish , D L , Chipera , S J , Fialips , C I , Carey , J W and Feldman , W C . 2004 . Magnesium sulphate salts and the history of water on Mars . Nature , 431 : 663 – 665 .
   PubMed Web of Science ®Google Scholar
• Vincent , W F , Downes , M T , Castenholz , R W and Howard-Williams , C . 1993 . Community structure and pigment organisation of cyanobacteria-dominated microbial mats in Antarctica . Eur J Phycol , 28 : 213 – 221 .
   Web of Science ®Google Scholar
• Vincent , W F and Roy , S . 1993 . Solar ultraviolet-B radiation and aquatic primary production: damage, protection, and recovery . Environ Rev , 1 : 1 – 12 .
   Google Scholar
• Walker , J J and Pace , N R . 2007 . Phylogenetic composition of Rocky Mountain endolithic microbial ecosystems . Appl Environ Microbiol , 73 : 3497 – 3504 .
   PubMed Web of Science ®Google Scholar
• Walker , J J , Spear , J R and Pace , N R . 2005 . Geobiology of a microbial endolithic community in the Yellowstone geothermal environment . Nature , 434 : 1011 – 1014 .
   PubMed Web of Science ®Google Scholar
• Wear , D J , Sullivan , M J , Moore , A D and Millie , D F . 1999 . Effects of water-column enrichment on the production dynamics of three seagrass species and their epiphytic algae . Mar Ecol Progr Ser. , 179 : 201 – 213 .
   Web of Science ®Google Scholar
• Wierzchos , J , Ascaso , C and McKay , C P . 2006 . Endolithic cyanobacteria in halite rocks from the hyperarid core of the Atacama Desert . Astrobiology , 6 : 415 – 422 .
   PubMed Web of Science ®Google Scholar
• Wierzchos , J and Ascaso , C . 2002 . Microbial fossil record of rocks from the Ross Desert, Antarctica: implications in the search for past life on Mars . Int J Astrobiol , 1 : 51 – 59 .
   Google Scholar
• Wynn-Williams , D D , Edwards , H GM and Pichel , G . 1999 . Functional biomolecules of Antartica stromatolitic and endolithic cyanobacterial communities . Eur J Phycol , 34 : 381 – 391 .
   Web of Science ®Google Scholar
• Wynn-Williams , D D and Edwards , H GM . 2000 . Antarctic ecosystems as model for extraterrestrial surface habitats . Planet Space Sci , 48 : 1065 – 1075 .
   Web of Science ®Google Scholar
• Wynn-Williams , D D , Edwards , H GM , Newton , E M and Holder , J M . 2002 . Pigmentation as a survival strategy for ancient and modern photosynthetic microbes under high ultraviolet stress on planetary surface . Inter J Astrobiol , 1 : 39 – 49 .
   Google Scholar