Bacterial Diversity in Soil Exposed to Highway Runoff and De-icing Agents

REFERENCES

• Altschul , S F , Gish , W , Miller , W , Meyers , E W and Lipman , D J . 1990 . Basic Local Alignment Search Tool 403 – 410 . 215
   Google Scholar
• Amann , R I , Binder , B J , Olson , R J , Chisholm , S W , Devereux , R and Stahl , D A . 1990 . Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations . Appl Environ Microbiol , 56 : 1919 – 1925 .
   PubMed Web of Science ®Google Scholar
• Anderson , R T , Vrionis , H A , Ortiz-Bernad , I , Resch , C T , Long , P E , Dayvault , R , Karp , K , Marutzky , S , Metzler , D R Peacock , A . 2003 . Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer . Appl Environ Microbiol , 69 : 5884 – 5891 .
   PubMed Web of Science ®Google Scholar
• American Society for Testing and Materials (ASTM) . 2005 . Standard Test Method for Laboratory Determination of Water (Moisture) Content of Soil and Rock by Mass. ASTM. D2216–05 vol. 04.08: 1–7 , West Conshohocken, PA .
   Google Scholar
• American Society for Testing and Materials (ASTM) . 2007 . Standard test methods for moisture, ash, and organic matter of peat and other organic soils. ASTM. D 2974–07 vol. 04.08: 1–4 , West Conshohocken, PA .
   Google Scholar
• Basberg , L , Banks , D and Sæther , O M . 1998 . Redox processes in groundwater impacted by landfill leachate . Aquat Geochem , 4 : 253 – 272 .
   Web of Science ®Google Scholar
• Benson , D A , Karsch-Mizrachi , I , Lipman , D J , Ostell , J , Rapp , B A and Wheeler , D L . 2000 . GenBank . Nucl Acids Res , 28 : 15 – 18 .
   PubMed Web of Science ®Google Scholar
• Brad , T , van Breukelen , B M , Braster , M , van Straalen , N M and Röling , W FM . 2008 . Spatial heterogeneity in sediment-associated bacterial and eukaryotic communities in a landfill leachate-contaminated aquifer . FEMS Microbiol Ecol , 65 : 534 – 543 .
   PubMed Web of Science ®Google Scholar
• Chapelle , F H and Lovley , D R . 1992 . Competitive exclusion of sulfate reduction by Fe(lll)-reducing bacteria: A mechanism for producing discrete zones of high-iron ground water . Ground Water , 30 : 29 – 36 .
   Web of Science ®Google Scholar
• Dechesne , M , Barraud , S and Bardin , J-P . 2005 . Experimental assessment of stormwater infiltration basin evolution . J Environ Engin , 131 : 1090 – 1098 .
   Web of Science ®Google Scholar
• Eden , P A , Schimdt , T M , Blakemore , R P and Pace , N R . 1991 . Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA . Int J Syst Bacteriol , 41 : 324 – 325 .
   PubMedGoogle Scholar
• Fischer , D , Charles , E G and Baehr , A L . 2003 . Effects of stormwater infiltration on quality of groundwater beneath retention and detention basins . J Environ Engin , 129 : 464 – 471 .
   Web of Science ®Google Scholar
• Hansen , B P and Lapham , W W . 1992 . Geohydrology and simulated ground-water flow, Plymouth-Carver Aquifer , Marlborough, MA : Southeastern Massachusetts. U.S.G.S .
   Google Scholar
• Heck , K L , van Belle , G and Simberloff , D . 1975 . Explicit calculation of the rarefaction diversity measurement and the determination of sufficient sample size . Ecology , 56 : 1459 – 1461 .
   Web of Science ®Google Scholar
• Holm , P E , Nielsen , P H , Albrechtsen , H J and Christensen , T H . 1992 . Importance of unattached bacteria and bacteria attached to sediment in determining potentials for degradation of xenobiotic organic contaminants in an aerobic aquifer . Appl Environ Microbiol , 58 : 3020 – 3026 .
   PubMedGoogle Scholar
• Holmes , D E , Nevin , K P , O’Neil , R A , Ward , J E , Adams , L A , Woodard , T L , Vrionis , H A and Lovley , D R . 2005 . Potential for quantifying expression of the Geobacteraceae citrate synthase gene to assess the activity of Geobacteraceae in the subsurface and on current-harvesting electrodes . Appl Environ Microbiol , 71 : 6870 – 6877 .
   PubMed Web of Science ®Google Scholar
• Holmes , D E , O’Neil , R A , Vrionis , H A , N’Guessan , L A , Ortiz-Bernad , I , Larrahondo , M J , Adams , L A , Ward , J A , Nicoll , J S Nevin , K P . 2007 . Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments . ISME J , 1 : 663 – 677 .
   PubMed Web of Science ®Google Scholar
• Hurlbert , SH. 1971 . The nonconcept of species diversity: A critique and alternative parameters . Ecology , 52 : 577 – 586 .
   PubMed Web of Science ®Google Scholar
• Hwang , C , Wu , W , Gentry , T J , Carley , J , Corbin , G A , Carroll , S L , Watson , D B , Jardine , P M , Zhou , J Criddle , C S . 2009 . Bacterial community succession during in situ uranium bioremediation: spatial similarities along controlled flow paths . ISME J , 3 : 47 – 64 .
   PubMed Web of Science ®Google Scholar
• Lane , D J , Pace , B , Olsen , G J , Stahl , D A , Sogin , M L and Pace , N R . 1985 . Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses . Proc Natl Acad Sci USA , 82 : 6955 – 6959 .
   PubMed Web of Science ®Google Scholar
• Lovley , D R and Phillips , E JP . 1986 . Organic matter mineralization with reduction of ferric iron in anaerobic sediments . Appl Environ Microbiol , 51 : 683 – 689 .
   PubMed Web of Science ®Google Scholar
• Lovley , D R and Phillips , E JP . 1987 . Rapid assay for microbially reducible ferric iron in aquatic sediments . Appl Environ Microbiol , 53 : 1536 – 1540 .
   PubMed Web of Science ®Google Scholar
• Nevin , K P , Holmes , D E , Woodard , T L , Hinlein , E S , Ostendorf , D W and Lovley , D R . 2005 . Geobacter bemidjiensis sp. nov. and Geobacter psychrophilus sp. nov., two novel Fe(III)-reducing subsurface isolates . Int J Syst Evol Microbiol , 55 : 1667 – 1674 .
   PubMed Web of Science ®Google Scholar
• Ostendorf , D W , Hinlein , E S , Ahlfeld , D P and DeJong , J T . 2006 . Calibrated models of deicing agent solids, pavement texture, and specific conductivity of highway runoff . J Environ Eng , 132 : 1562 – 1571 .
   Google Scholar
• Ostendorf , D W , Palmer , R N and Hinlein , E S . 2009a . Seasonally varying highway de-icing agent contamination in a groundwater plume from an iInfiltration basin . Hydrol Res , 40 : 520 – 532 .
   Google Scholar
• Ostendorf , D W , Park , C , Rotaru , C and Pereira , M S . 2009b . Case study of steady oxygen concentration gradients in a groundwater plume from a highway infiltration basin . J Environ Eng , 135 : 1237 – 1243 .
   Google Scholar
• Ostendorf , D W , Rotaru , C and Hinlein , E S . 2008 . Steady groundwater transport of highway deicing agent constituents from an infiltration basin . J Irrig Drain Eng , 134 : 630 – 637 .
   Google Scholar
• Polkowska , Ż , Zabiegała , B , Górecki , T and Namieśnik , J . 2005 . Contamination of runoff waters from roads with high traffic intensity in the urban region of Gdañsk, Poland . Polish J Environ Stud , 14 : 799 – 807 .
   Google Scholar
• Ratering , S and Schnell , S . 2000 . Localization of iron-reducing activity in paddy soil by profile studies . Biogeochem , 48 : 341 – 365 .
   Web of Science ®Google Scholar
• Roling , W FM , van Breukelen , B M , Braster , M , Lin , B and van Verseveld , H W . 2001 . Relationships between microbial community structure and hydrochemistry in a landfill leachate-polluted aquifer . Appl Environ Microbiol , 67 : 4619 – 4629 .
   PubMed Web of Science ®Google Scholar
• Shen , T-J , Chao , A and Lin , C-F . 2003 . Predicting the number of new species in further taxonomic sampling . Ecology , 84 : 798 – 804 .
   Web of Science ®Google Scholar
• Utsumi , M , Nojiri , Y , Ytow , N and Seki , H . 1998 . Dynamics of attached bacteria at the water-sediment interface in a mesotrophic swampy bog of Japan . J Oceanogr , 54 : 179 – 184 .
   Google Scholar