358
Views
21
CrossRef citations to date
0
Altmetric
Original Articles

Seasonal Changes In Mineralogy, Geochemistry and Microbial Community of Bacteriogenic Iron Oxides (BIOS) Deposited in a Circumneutral Wetland

, , , , , , , , & show all
Pages 161-172 | Received 10 Aug 2010, Accepted 07 Oct 2010, Published online: 07 Dec 2011

REFERENCES

  • Anderson , C R , James , R E , Fru , E C , Kennedy , C B and Pedersen , K . 2006 . In situ ecological development of a bacteriogenic iron oxide-producing microbial community from a subsurface granitic rock environment . Geology , 4 : 29 – 42 .
  • Binsted , N. 1998 . “ EXCURV98. CCLRC Daresbury Laboratory computer program ” . Available from: www.cse.scitech.ac.uk/cmg/EXCURV
  • Blöthe , M and Roden , E E . 2009 . Microbial iron redox cycling in a circumneutral-pH groundwater seep . Appl Environ Microbiol , 75 : 468 – 473 .
  • Carignan , R. 1984 . Interstitial water sampling by dialysis - Methodological notes . Limnol Oceanogr , 29 : 667 – 670 .
  • Cline , JD. 1969 . Spectrophotometric determination of hydrogen sulfide in natural waters . Limnol Oceanogr , 14 : 454 – 458 .
  • Davison , W and Seed , G . 1983 . The kinetics of the oxidation of ferrous iron in synthetic and natural waters . Geochim Cosmochim Acta , 47 : 67 – 79 .
  • Druschel , G K , Emerson , D , Sutka , R , Suchecki , P and Luther , G W . 2008 . Low-oxygen and chemical kinetic constraints on the geochemical niche of neutrophilic iron(II) oxidizing microorganisms . Geochim Cosmochim Acta , 72 : 3358 – 3370 .
  • Duckworth , O W , Holmström , S JM , Peña , J and Sposito , G . 2009 . Biogeochemistry of iron oxidation in a circumneutral freshwater habitat . Chem Geol , 260 : 149 – 158 .
  • Edwards , K J , Bach , W , McCollom , T M and Rogers , D R . 2004 . Neutrophilic iron-oxidizing bacteria in the ocean: Their habitats, diversity, and roles in mineral deposition, rock alteration, and biomass production in the deep-sea . Geomicrobiol J , 21 : 393 – 404 .
  • Edwards , K J , Rogers , D R , Wirsen , C O and McCollom , T M . 2003 . Isolation and characterization of novel psychrophilic, neutrophilic, Fe-oxidizing, chemolithoautotrophic α- and γ-Proteobacteria from the deep sea . Appl Environ Microbiol , 69 : 2906 – 2913 .
  • Ellis , P. 2000 . “ EXSPLINE—a program for EXAFS background subtraction ” . CCLRC Daresbury Laboratory computer program .
  • Emerson , D. 2000 . “ Microbial oxidation of Fe(II) and Mn(II) at circumneutral pH ” . In Environmental Microbe- Mineral Interactions , Edited by: Lovley , D R . 53 – 78 . Washington, DC : ASM Press .
  • Emerson , D and Weiss , J V . 2004 . Bacterial iron oxidation in circumneutral freshwater habitats: Findings from the field and the laboratory . Geomicrobiol J , 21 : 405 – 414 .
  • Emerson , D and Moyer , C L . 2002 . Neutrophilic Fe-Oxidizing bacteria are abundant at the Loihi Seamount hydrothermal vents and play a major role in Fe oxide deposition . Appl Environ Microbiol , 68 : 3085 – 3093 .
  • Emerson , D and Moyer , C . 1997 . Isolation and characterization of novel iron-oxidizing bacteria that grow at circumneutral pH . Appl Environ Microbiol , 63 : 4784 – 4792 .
  • Emerson , D and Revsbech , N P . 1994a . Investigation of an iron-oxidizing microbial mat community located near Aarhus, Denmark - Field studies . Appl Environ Microbiol , 60 : 4022 – 4031 .
  • Emerson , D and Revsbech , N P . 1994b . Investigation of an iron-oxidizing microbial mat community located near Aarhus, Denmark - Laboratory studies . Appl Environ Microbiol , 60 : 4032 – 4038 .
  • Emerson , D , Fleming , E J and McBeth , J M . 2010 . Iron-oxidizing bacteria: An envrionmental and genomic perspective . Annu Rev Microbiol , 64 : 561 – 583 .
  • Emerson , D , Weiss , J V and Megonigal , J P . 1999 . Iron-oxidizing bacteria are associated with ferric hydroxide precipitates (Fe-plaque) on the roots of wetland plants . Appl Environ Microbiol , 65 : 2758 – 2761 .
  • Fenchel , R and Blackburn , T H . 1979 . Bacteria and Mineral Cycling , 225 London : Academic Press . p
  • Ferris , F G , Hallberg , R O , Lyven , B and Pedersen , K . 2000 . Retention of strontium, cesium, lead and uranium by bacterial iron oxides from a subterranean environment . Appl Geochem , 15 : 1035 – 1042 .
  • Ferris , F G , Konhauser , K O , Lyven , B and Pedersen , K . 1999 . Accumulation of metals by bacteriogenic iron oxides in a subterranean environment . Geomicrobiol J , 16 : 181 – 192 .
  • Fru , EC. 2009 . Iron oxides influence bacterial community structure and the spatial distribution of the aerobic methanotrophs and sulphate reducers in granitic aquifers . Geomicrobiol J , 26 : 415 – 429 .
  • Haaijer , S CM , Harhangi , H R , Meijerink , B B , Strous , M , Pol , A , Smolders , A JP , Verwegen , K , Jetten , M SM and Op den Camp , H JM . 2008 . Bacteria associated with iron seeps in a sulfur-rich, neutral pH, freshwater ecosystem . ISME J , 2 : 1231 – 1242 .
  • Hallbeck , L and Pedersen , K . 2005 . “ Gallionella Ehrenberg 1838, 166AL ” . In Bergey's Manual of Systematic Bacteriology , Edited by: Brenner , D J , Krieg , N R and Staley , J T . 880 – 886 . New York : Springer .
  • Hallbeck , L and Pedersen , K . 1991 . Autotrophic and mixotrophic growth of Gallionella ferruginea . J Gen Microbiol , 137 : 2657 – 2661 .
  • Hegler , F , Posth , N R , Jiang , J and Kappler , A . 2008 . Physiology of phototrophic iron(II)-oxidizing bacteria: implications for modern and ancient environments . FEMS Microbiol Ecol , 66 : 250 – 260 .
  • Islam , F S , Gault , A G , Boothman , C , Polya , D A , Charnock , J M , Chatterjee , D and Lloyd , J R . 2004 . Role of metal-reducing bacteria in arsenic release from Bengal delta sediments . Nature , 430 : 68 – 71 .
  • James , R E and Ferris , F G . 2004 . Evidence for microbial-mediated iron oxidation at a neutrophilic groundwater spring . Chem Geol , 212 : 301 – 311 .
  • Katsoyiannis , IA. 2007 . Carbonate effects and pH-dependence of uranium sorption onto bacteriogenic iron oxides: Kinetic and equilibrium studies . J Hazard Mater , 139 : 31 – 37 .
  • Kennedy , C B , Scott , S D and Ferris , F G . 2004 . Hydrothermal phase stabilization of 2-line ferrihydrite by bacteria . Chem Geol , 212 : 269 – 277 .
  • Kennedy , C B , Scott , S D and Ferris , F G . 2003 . Characterization of bacteriogenic iron oxide deposits from Axial Volcano, Juan de Fuca Ridge, northeast Pacific Ocean . Geomicrobiol J , 20 : 199 – 214 .
  • Kennedy , C B , Gault , A G , Clark , I D , Fortin , D and Ferris , F G . in press . Retention of iodide by bacteriogenic iron oxides . Geomicrobiol J , 28 : 387 – 395 .
  • Koretsky , C M , Haas , J R , Miller , D and Ndenga , N T . 2006a . Seasonal variations in pore water and sediment geochemistry of littoral lake sediments (Asylum Lake, MI, USA) . Geochem Trans , 7 : 11
  • Koretsky , C M , Haas , J R , Ndenga , N T and Miller , D . 2006b . Seasonal variations in vertical redox stratification and potential influence on trace metal speciation in minerotrophic peat sediments . Water Air Soil Pollut , 173 : 373 – 403 .
  • Koretsky , C M , Van Cappellen , P , Dichristina , T J , Kostka , J E , Lowe , K L , Moore , C M , Roychoudhury , A N and Viollier , E . 2005 . Salt marsh pore water geochemistry does not correlate with microbial community structure . Estuar Coast Shelf Sci , 62 : 233 – 251 .
  • Kulczycki , E , Fowle , D A , Fortin , D and Ferris , F G . 2005 . Sorption of cadmium and lead by bacteria-ferrihydrite composites . Geomicrobiol J , 22 : 299 – 310 .
  • Langley , S , Igric , P , Takahashi , Y , Sakai , Y , Fortin , D , Hannington , M and Schwarz-Schampera , U . 2009a . Preliminary characterization and biological reduction of putative biogenic iron oxides (BIOS) from the Tonga-Kermadec Arc, southwest Pacific Ocean . Geobiology , 7 : 35 – 49 .
  • Langley , S , Gault , A G , Ibrahim , A , Takahashi , Y , Renaud , R , Fortin , D , Clark , I D and Ferris , F G . 2009b . Sorption of strontium onto bacteriogenic iron oxides . Environ Sci Technol , 43 : 1008 – 1014 .
  • Liu , W J , Zhu , Y G , Hu , Y , Williams , P N , Gault , A G , Meharg , A A , Charnock , J M and Smith , F A . 2006 . Arsenic sequestration in iron plaque, its accumulation and speciation in mature rice plants (Oryza sativa L.) . Environ Sci Technol , 40 : 5730 – 5736 .
  • Moon , E M and Peacock , C L . 2009 . Cu(II) Sorption to Bacillus subtilis and Bacteriogenic Ferrihydrite: Insights from XAS Spectroscopy . 73 : A898 – A898 .
  • Mulholland , PJ. 2003 . “ Large-scale patterns in dissolved organic carbon concentration, flux, and sources ” . In Aquatic Ecosystems: Interactivity of Dissolved Organic Matter , Edited by: Findlay , S and Sinsabaugh , R . 139 – 159 . New York : Elsevier .
  • Neubauer , S C , Toledo-Duran , G E , Emerson , D and Megonigal , J P . 2007 . Returning to their roots: Iron-oxidizing bacteria enhance short-term plaque formation in the wetland-plant rhizosphere . Geomicrobiol J , 24 : 65 – 73 .
  • Posth , N R , Hegler , F , Konhauser , K O and Kappler , A . 2008 . Alternating Si and Fe deposition caused by temperature fluctuations in Precambrian oceans . 1 : 703 – 708 .
  • Schwertmann , U , Stanjek , H and Becher , H- . 2004 . Long-term in vitro transformation of 2-line ferrihydrite to goethite/hematite at 4, 10, 15 and 25°C . Clay Miner , 39 : 433 – 438 .
  • Spring , S. 2006 . “ The Genera Leptothrix and Sphaerotilus ” . In The Prokaryotes , 3rd , Edited by: Dworkin , M , Falkow , S , Rosenberg , E , Schleifer , K and Stackebrandt , E . 758 – 777 . New York : Springer .
  • Spring , S and Kämpfer , P . 2005 . “ Genus Incertae Sedis XIII. Leptothrix Kutzing 1843, 184AL ” . In Bergey's Manual of Systematic Bacteriology , Edited by: Brenner , D J , Krieg , N R and Staley , J T . 740 – 746 . New York : Springer .
  • St-Jean , G. 2003 . Automated quantitative and isotopic (13C) analysis of dissolved inorganic carbon and dissolved organic carbon in continuous-flow using a total organic carbon analyser . 17 : 419 – 428 .
  • Stookey , LL. 1970 . Ferrozine—a new spectrophotometric reagent for iron . Anal Chem , 42 : 779 – 781 .
  • Stumm , W and Morgan , J J . 1996 . Aquatic Chemistry, Chemical Equilibria and Rates in Natural Waters , New York : John Wiley & Sons .
  • Takashima , C , Kano , A , Naganuma , T and Tazaki , K . 2008 . Laminated iron texture by iron-oxidizing bacteria in a calcite travertine . Geomicrobiol J , 25 : 193 – 202 .
  • Toner , B M , Santelli , C M , Marcus , M A , Wirth , R , Chan , C S , McCollom , T , Bach , W and Edwards , K J . 2009 . Biogenic iron oxyhydroxide formation at mid-ocean ridge hydrothermal vents: Juan de Fuca Ridge . Geochim Cosmochim Acta , 73 : 388 – 403 .
  • Wang , J , Muyzer , G , Bodelier , P LE and Laanbroek , H J . 2009 . Diversity of iron oxidizers in wetland soils revealed by novel 16S rRNA primers targeting Gallionella-related bacteria . ISME J , 3 : 715 – 725 .
  • Weiss , J V , Rentz , J A , Plaia , T , Neubauer , S C , Merrill-Floyd , M , Lilburn , T , Bradburne , C , Megonigal , J P and Emerson , D . 2007 . Characterization of neutrophilic Fe(II)-oxidizing bacteria isolated from the rhizosphere of wetland plants and description of Ferritrophicum radicicola gen. nov sp nov., and Sideroxydans paludicola sp nov . Geomicrobiol J , 24 : 559 – 570 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.