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Original Articles

Molecular Detection of Novel Anammox Bacterial Clusters in the Sediments of the Shallow Freshwater Lake Taihu

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Pages 852-859 | Received 11 Jul 2011, Accepted 21 Sep 2011, Published online: 30 Aug 2012

REFERENCES

  • Amano , T , Yoshinaga , I , Okada , K , Yamagishi , T , Ueda , S , Obuchi , A , Sako , Y and Suwa , Y . 2007 . Detection of anammox activity and diversity of anammox bacteria-related 16S rRNA genes in coastal marine sediment in Japan . Microbes Environ , 22 : 232 – 242 .
  • Dale , O R , Tobias , C R and Song , B . 2009 . Biogeographical distribution of diverse anaerobic ammonium oxidizing (anammox) bacteria in Cape Fear River Estuary . Environ Microbiol , 11 : 1194 – 1207 .
  • Dalsgaard , T , Canfield , D E , Petersen , J , Thamdrup , B and Acuna-Gonzalez , J . 2003 . N2 production by the anammox reaction in the anoxic water column of Golfo Dulce, Costa Rica . Nature , 422 : 606 – 608 .
  • Engström , P , Dalsgaard , T , Hulth , S and Aller , R C . 2005 . Anaerobic ammonium oxidation by nitrite (anammox): Implications for N2 production in coastal marine sediments . Geochim Cosmochim Acta , 69 : 2057 – 2065 .
  • Guo , L. 2007 . Doing battle with the green monster of Taihu Lake . Science , 317 : 1166
  • Hong , Y G , Li , M , Cao , H and Gu , J D . 2010 . Residence of habitat-specific anammox bacteria in the deep-sea subsurface sediments of the South China Sea: Analyses of marker gene abundance with physical chemical parameters . Microb Ecol , 62 : 36 – 47 .
  • Horner-Devine , M C and Martiny , A C . 2008 . News about nitrogen . Science , 320 : 757 – 758 .
  • Huber , T , Faulkner , G and Hugenholtz , P . 2004 . Bellerophon: A program to detect chimeric sequences in multiple sequence alignments . Bioinformatics , 20 : 2317 – 2319 .
  • Humbert , S , Tarnawski , S , Fromin , N , Mallet , M-P , Aragno , M and Zopfi , J . 2010 . Molecular detection of anammox bacteria in terrestrial ecosystems: Distribution and diversity . ISME J , 4 : 450 – 454 .
  • Jetten , M SM , van Niftrik , L , Strous , M , Kartal , B , Keltjens , J T and op den Camp , H JM . 2009 . Biochemistry and molecular biology of anammox bacteria . Crit Rev Biochem Mol Biol , 44 : 65 – 84 .
  • Kartal , B , Koleva , M , Arsov , R , van de Star , W , Jetten , M SM and Strous , M . 2006 . Adaptation of a freshwater anammox population to high salinity wastewater . J Biotechnol , 126 : 546 – 553 .
  • Kartal , B , Rattray , J , van Niftrik , L A , van de Vossenberg , J , Schmid , M C , Webb , R , Schouten , S , Fuerst , J A , Damsté , J SS , Jetten , M SM and Strous , M . 2007 . Anammoxoglobus propionicus “a new propionate oxidizing species of anaerobic ammonium oxidizing bacteria”. Syst Appl Microbiol . Candidatus , 30 : 39 – 49 .
  • Kartal , B , van Niftrik , L , Rattray , J , van de Vossenberg , JLCM , Schmid , M C , Damst , J S , Jetten , M SM and Strous , M . 2008 . Candidatus “Brocadia fulgida”: An autofluorescent anaerobic ammonium oxidizing bacterium . FEMS Microbiol Ecol , 63 : 46 – 55 .
  • Klotz , M G , Schmid , M C , Strous , M , op den Camp , H JM , Jetten , M SM and Hooper , A B . 2008 . Evolution of an octahaem cytochrome c protein family that is key to aerobic and anaerobic ammonia oxidation by bacteria . Environ Microbiol , 10 : 3150 – 3163 .
  • Kuenen , JG. 2008 . Anammox bacteria: From discovery to application . Nat Rev Microbiol , 6 : 320 – 326 .
  • Kuypers , M MM , Lavik , G , Woebken , D , Schmid , M , Fuchs , B M , Amann , R , Jorgensen , B B and Jetten , M SM . 2005 . Massive nitrogen loss from the Benguela upwelling system through anaerobic ammonium oxidation . Proc Nat Acad Sci , 102 : 6478 – 6483 .
  • Kuypers , M MM , Sliekers , A O , Lavik , G , Schmid , M , Jorgensen , B B , Kuenen , J G , Sinninghe Damste , J S , Strous , M and Jetten , M SM . 2003 . Anaerobic ammonium oxidation by anammox bacteria in the Black Sea . Nature , 422 : 608 – 611 .
  • Li , H , Chen , S , Mu , B Z and Gu , J D . 2010a . Molecular detection of anaerobic ammonium-oxidizing (anammox) bacteria in high-temperature petroleum reservoirs . Microb Ecol , 60 : 771 – 783 .
  • Li , M , Ford , T , Li , X and Gu , J D . 2011 . Cytochrome cd1-containing nitrite reductase encoding gene nirS as a new functional biomarker for detection of anaerobic ammonium oxidizing (anammox) bacteria . Environ Sci Technol , 45 : 3547 – 3553 .
  • Li , M and Gu , J D . 2011 . Advances in methods for detection of anaerobic ammonium oxidizing (anammox) bacteria . Appl Microbiol Biotechnol , 90 : 1241 – 1252 .
  • Li , M , Hong , Y , Klotz , M G and Gu , J D . 2010b . A comparison of primer sets for detecting 16S rRNA and hydrazine oxidoreductase genes of anaerobic ammonium-oxidizing bacteria in marine sediments . Appl Microbiol Biotechnol , 86 : 781 – 790 .
  • Mulder , A , van de Graaf , A A , Robertson , L A and Kuenen , J G . 1995 . Anaerobic ammonium oxidation discovered in a denitrifying fluidized bed reactor . FEMS Microbiol Ecol , 16 : 177 – 183 .
  • Penton , C R , Devol , A H and Tiedje , J M . 2006 . Molecular evidence for the broad distribution of anaerobic ammonium-oxidizing bacteria in freshwater and marine sediments . Appl Environ Microbiol , 72 : 6829 – 6832 .
  • Purkhold , U , Pommerening-Roser , A , Juretschko , S , Schmid , M C , Koops , H-P and Wagner , M . 2000 . Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: Implications for molecular diversity surveys . Appl Environ Microbiol , 66 : 5368 – 5382 .
  • Qin , BQ. 2008 . Lake Taihu, China: Dynamics and environmental change. Dordrecht: Springer .
  • Ramette , A. 2007 . Multivariate analyses in microbial ecology . FEMS Microbiol Ecol , 62 : 142 – 140 .
  • Rich , J J , Dale , O R , Song , B and Ward , B B . 2008 . Anaerobic ammonium oxidation (anammox) in Chesapeake Bay sediments . Microb Ecol , 55 : 311 – 320 .
  • Risgaard-Petersen , N and Jensen , K . 1997 . Nitrification and denitrification in the rhizosphere of the aquatic macrophyte Lobelia dortmanna L . Limnol Oceanogr , 42 : 529 – 537 .
  • Schloss , P D and Handelsman , J . 2005 . Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness . Appl Environ Microbiol , 71 : 1501 – 1506 .
  • Schloss , P D and Handelsman , J . 2006 . Introducing SONS, a tool for operational taxonomic unit-based comparisons of microbial community memberships and structures . Appl Environ Microbiol , 72 : 6773 – 6779 .
  • Schloss , P D , Larget , B R and Handelsman , J . 2004 . Integration of microbial ecology and statistics: A test to compare gene libraries . Appl Environ Microbiol , 70 : 5485 – 5492 .
  • Schmid , M C , Hooper , A B , Klotz , M G , Woebken , D , Lam , P , Kuypers , M MM , Pommerening-Roeser , A , od Camp , H JM and Jetten , M SM . 2008 . Environmental detection of octahaem cytochrome c hydroxylamine/hydrazine oxidoreductase genes of aerobic and anaerobic ammonium-oxidizing bacteria . Environ Microbiol , 10 : 3140 – 3149 .
  • Schubert , C J , Durisch-Kaiser , E , Wehrli , B , Thamdrup , B , Lam , P and Kuypers , M MM . 2006 . Anaerobic ammonium oxidation in a tropical freshwater system (Lake Tanganyika) . Environ Microbiol , 8 : 1857 – 1863 .
  • Strous , M , Pelletier , E , Mangenot , S , Rattei , T , Lehner , A , Taylor , M W , Horn , M , Daims , H , Bartol-Mavel , D , Wincker , P , Barbe , V , Fonknechten , N , Vallenet , D , Segurens , B , Schenowitz-Truong , C , Medigue , C , Collingro , A , Snel , B , Dutilh , B E , Op den Camp , H JM , van der Drift , C , Cirpus , I , van de Pas-Schoonen , K T , Harhangi , H R , van Niftrik , L , Schmid , M , Keltjens , J , van de Vossenberg , J , Kartal , B , Meier , H , Frishman , D , Huynen , M A , Mewes , H W , Weissenbach , J , Jetten , M SM , Wagner , M and Le Paslier , D . 2006 . Deciphering the evolution and metabolism of an anammox bacterium from a community genome . Nature , 440 : 790 – 794 .
  • Trimmer , M , Nicholls , J C , Morley , N , Davies , C A and Aldridge , J . 2005 . Biphasic behavior of anammox regulated by nitrite and nitrate in an estuarine sediment . Appl Environ Microbiol , 71 : 1923 – 1930 .
  • Woebken , D , Lam , P , Kuypers , M , Naqul , S WA , Kartal , B , Strous , M , Jetten , M SM , Fuchs , B M and Amann , R . 2008 . A microdiversity study of anammox bacteria reveals a novel Candidatus Scalindua phylotype in marine oxygen minimum zones . Environ Microbiol , 10 : 3106 – 3119 .
  • Wu , Q L , Zwart , G , Wu , J , Agterveld , MPK-v , Liu , S and Hahn , M W . 2007 . Submersed macrophytes play a key role in structuring bacterioplankton community composition in the large, shallow, subtropical Taihu Lake, China . Environ Microbiol , 9 : 2765 – 2774 .
  • Wu , Y , Xiang , Y , Wang , J , Zhong , J , He , J and Wu , Q L . 2010 . Heterogeneity of archaeal and bacterial ammonia-oxidizing communities in Lake Taihu, China . Environ Microbiol Rep , 2 : 569 – 576 .
  • Xing , P and Kong , F . 2007 . Intra-habitat heterogeneity of environmental factors regulating bacterioplankton community composition in Lake Taihu, China . Aquat Microb Ecol , 48 : 113 – 122 .
  • Xu , H , Zhang , L , Shang , J , Dai , J and Fan , C . 2009 . Denitrification and anammox on the sediment-water interface in the Meiliang Bay of Lake Taihu . J Lake Sci , 21 : 775 – 781 .
  • Zhang , Y , Ruan , X-H , Op den Camp , H JM , Smits , T JM , Jetten , M SM and Schmid , M C . 2007 . Diversity and abundance of aerobic and anaerobic ammonium-oxidizing bacteria in freshwater sediments of the Xinyi River (China) . Environ Microbiol , 9 : 2375 – 2382 .
  • Zhou , J , Bruns , M A and Tiedje , J M . 1996 . DNA recovery from soils of diverse composition . Appl Environ Microbiol , 62 : 316 – 322 .

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