85
Views
1
CrossRef citations to date
0
Altmetric
Miscellany

Further Readings in Geomicrobiology

Pages 379-380 | Published online: 08 Feb 2013

References

  • Allen , R C , Tu , Y-K , Nevarez , M J , Bobbs , A S , Friesen , J W , Lorsch , J R , McCauley , J A , Voet , J G and Hamlett , N V . 2013 . The mercury resistance (mer) operon in a gliding flavobacterium, Tenacibaculum discolor 9A5 . FEMS Microbiology Ecology , 83 : 135 – 148 .
  • Barret , M , Gagnon , N , Kalmokoff , M L , Topp , E , Verastegui , Y , Brooks , S PJ , Matias , F , Neufeld , J D and Talbot , G . 2013 . Identification of Methanoculleus spp. as active methanogens during anoxic incubations of swine manure storage tank samples . Appl Environ Microbiol , 79 : 424 – 433 .
  • Beller , H R , Han , R , Karaoz , U , Lim , H and Brodie , E L . 2013 . Genomic and physiological characterization of the chromate-reducing, aquifer-derived firmicute Pelosinus sp. strain HCF 1 . Appl Environ Microbiol , 79 : 63 – 73 .
  • Brown , M N , Briones , A , Diana , J and Raskin , L . 2013 . Ammonia-oxidizing archaea and nitrite-oxidizing nitrospiras in the biofilter of a shrimp recirculating aquaculture system . FEMS Microbiology Ecology , 83 : 17 – 25 .
  • Candelier , Y , Minoletti , F , Probert , I and Hermoso , M . 2013 . Temperature dependence of oxygen isotope fractionation in coccolith calcite: A culture and core top calibration of the genus Calcidiscus . Geochim Cosmochim Acta , 100 : 264 – 281 .
  • Chakraborty , A and Picardal , F . 2013 . Induction of nitrate-dependent Fe(II) oxidation by Fe(II) in Dechloromonas sp. strain UWNR4 and Acidovorax sp. strain 2AN . Appl Environ Microbiol , 79 : 748 – 752 .
  • Chavez-Dozal , A , Gorman , C , Erken , M , Steinberg , P D , McDougald , D and Nishiguchi , M K . 2013 . Predation response of Vibrio fischeri biofilms to bacteriovorous protists . Appl Environ Microbiol , 79 : 553 – 558 .
  • Chubar , N , Visser , T , Avramut , C and de Waart , H . 2013 . Sorption and precipitation of Mn2+ by viable and autoclaved Shewanella putrefaciens: Effect of contact time . Geochim Cosmochim Acta , 100 : 232 – 250 .
  • Colin , Y , Goñi-Urriza , M , Caumette , P and Guyoneaud , R . 2013 . Combination throughout cultivation and dsrA sequencing for assessment of sulfate-reducing bacteria diversity in sediments . FEMS Microbiology Ecology , 83 : 26 – 37 .
  • Cunliffe , M. 2013 . Physiological and metabolic effects of carbon monoxide oxidation in the model marine bacterioplankton Ruegeria pomeroyi DSS-3 . Appl Environ Microbiol , 79 : 738 – 740 .
  • Cunliffe , M , Upstill-Goddard , R C and Murelli , J C . 2011 . Microbiology of aquatic surface microlayers . FEMS Microbiology Reviews , 35 : 233 – 246 .
  • Dang , H , Yang , J , Li , J , Luan , X , Zhang , Y , Gu , G , Xue , R , Zong , M and Klotz , M G . 2013 . Environment-dependent distribution of the sediment nifH-harboring microbiota in the northern South China Sea . Appl Environ Microbiol , 79 : 121 – 132 .
  • Denovaro , R , Corinaides , C , Dell’Anno , A , Furman , J A , Middleburg , J J , Noble , R T and Suttle , C A . 2011 . Marine viruses and global climate change . FEMS Microbiology Reviews , 35 : 993 – 1034 .
  • Djukic , I , Zehetner , F , Watziger , A , Horacek , M and Gerzabek , M H . 2013 . In situ carbon turnover dynamics and the role of soil microorganisms therein: a climate warming study in an Alpine ecosystem . FEMS Microbiology Ecology , 83 : 112 – 124 .
  • Dumitrache , A , Wolfaardt , G , Allen , G , Liss , S N and Lynd , L R . 2013 . Form and function of Clostridium thermocellum biofilms . Appl Environ Microbiol , 79 : 231 – 239 .
  • Dworkin , M. 2012 . Sergei Winogradsky: a founder of modern microbiology and the first microbial ecologist . FEMS Microbiology Ecology , 36 : 364 – 379 .
  • Elias , S and Banin , E . 2012 . Multi-species biofilms: living with friendly neighbors . FEMS Microbiology Reviews , 36 : 990 – 1004 .
  • Fotidis , I A , Karakashev , D , Kotsopoulos , T A , Martzopoulos , G G and Angelikaki , I . 2013 . Effect of ammonium and acetate on methanogenic pathway and methanogenic community composition . FEMS Microbiology Ecology , 83 : 38 – 48 .
  • Geszvain , K , McCarthy , J K and Tebo , B M . 2013 . Elimination of manganese (II,III) oxidation in Pseudomonas putida GB-1 by a double knockout of two putative multicopper oxidase genes . Appl Environ Microbiol , 79 : 357 – 366 .
  • Gutierrez , T , Green , D H , Nichols , P D , Whitman , W B , Semple , K T and Aitken , M D . 2013 . Polycyclovorans algicola gen. nov, sp. nov,, an aromatic-hydrocarbon-degrading marine bacterium found associated with laboratory cultures of marine phytoplankton . Appl Environ Microbiol , 79 : 205 – 214 .
  • Hagermann , M. 2011 . Molecular biology of cyanobacterial salt acclimation . FEMS Microbiological Reviews , 35 : 87 – 123 .
  • Heuer , H and Smalla , K . 2012 . Plasmids foster diversification and adaptation of bacterial populations in soil . FEMS Microbiology Reviews , 36 : 1083 – 1104 .
  • Higgins , D and Dworkin , J . 2012 . Recent progress in Bacillus subtilis sporulation . FEMS Microbiolgy Reviews , 36 : 131 – 148 .
  • Hunt , D E , Lin , Y , Church , M J , Karl , D M , Tringe , S G , Izzo , L K and Johnson , Z I . 2013 . Relationship between abundance and specific activity of bacterioplankton in open ocean surface waters . Appl Environ Microbiol , 79 : 177 – 184 .
  • Kikumoto , M , Nogami , S , Kanao , T , Takada , J and Kamimura , K . 2013 . Tetrathionate-forming thiosulfate dehydrogenase from the acidophilic, chemolithoautotrophic bacterium Acidithiobacillus ferrooxidans . Appl Environ Microbiol , 79 : 113 – 120 .
  • Komelli , A. 2012 . Molecular mechanisms of compartmentalization and biomineralization in magnetotactic bacteria . FEMS Microbiology Reviews , 36 : 232 – 255 .
  • Krauss , G-J , Solé , M , Krauss , G , Schlosser , D , Wesenberg , D and Bäriocher , F . 2011 . Fungi in freshwaters: ecology, physiology and biochemical potential . FEMS Microbiology Reviews , 35 : 620 – 651 .
  • Leigh , J A , Albers , S-V , Atomi , H and Allers , T . 2011 . Model Organisms for genetics in the domain Archaea: methanogens, halophiles, Thermococcales and Sulfolobales . FEMS Microbiology Reviews , 35 : 577 – 608 .
  • Liebner , S and Svenning , M M . 2013 . Environmental transcription of mmoX by methane-oxidizing Proteobacteria in subarctic palsa peatland . Appl Environ Microbiol , 79 : 701 – 706 .
  • Liljequist , M , Rzhepishevska , O I and Dopson , M . 2013 . Gene identification and substrate regulation provide insight into sulfur accumulation during bioleaching with the psychrotolerant acidophile Acidithiobacillus ferrivorans . Appl Environ Microbiol , 79 : 951 – 957 .
  • Liu , S-B , Chen , X-L , He , H-L , Zhang , X-Y , Xie , B-B , Yu , Y , Chen , B , Zhou , B-C and Zhang , Y-Z . 2013 . Structure and ecological roles of a novel exopolysaccharide from the Arctic Sea ice bacterium Pseudoalteromonas sp. strain SM20310 . Appl Environ Microbiol , 79 : 224 – 230 .
  • Long , A , Heitman , J , Tobias , C , Philips , R and Song , B . 2013 . Co-occurring anammox, denitrification, and codenitrification in agricultural soils . Appl Environ Microbiol , 79 : 168 – 176 .
  • Long , R A , Eveillard , D , Franco , S LM , Reeves , E and Pickney , J L . 2013 . Antagonistic interactions between heterotrophic bacteria as a potential regulator of community structure of hypersaline microbial mats . FEMS Microbiology Ecology , 83 : 74 – 81 .
  • Maignien , L , Parkes , R J , Cragg , B , Niemann , H , Knittel , K , Coulon , S , Akhmetzhanov , A and Boon , N . 2013 . Anaerobic oxidation of methane in hypersaline cold seep sediments . FEMS Microbiology Ecology , 83 : 214 – 231 .
  • Mann , E E and Wozniak , D J . 2012 . Pseudomonas biofilm matrix composition and niche biology . FEMS Microbiology Reviews , 36 : 893 – 916 .
  • Merkel , A Y , Huber , J A , Chernyh , N A , Bonch-Osmolovskaya , E A and Lebedinsky , A V . 2013 . Detection of putatively thermophilic anaerobic methanotrophs in diffuse hydrothermal vent fluids . Appl Environ Microbiol , 79 : 915 – 923 .
  • Miyatake , T , MacGregor , B J and Roschker , H TS . 2013 . Depth-related differences in organic substrate utilization by major microbial groups in intertidal marine sediments . Appl Environ Microbiol , 79 : 389 – 392 .
  • Mizuno , C M , Rodriguez-Valera , F , Garcia-Heredia , I , Martin-Cuadrado , A-B and Chai , R . 2013 . Reconstruction of novel cyanobacterial siphovirus genomes from Mediterranean metagenomic fosmids . Appl Environ Microbiol , 79 : 688 – 695 .
  • Montañez , IP. 2013 . Modern soil system constraints on reconstructing deep-time atmospheric CO2 . Geochim Cosmochim Acta , 101 : 57 – 75 .
  • Nielsen , D , Schramm , A , Nielsen , L P and Revsbech , N P . 2013 . Seasonal methane oxidation potential in manure crusts . Appl Environ Microbiol , 79 : 407 – 410 .
  • Pina , M , Bize , A , Forterre , P and Prangisvili , D . 2011 . The archeoviruses . FEMS Micobiology Reviews , 35 : 1035 – 1054 .
  • Rendueles , O and Ghigo , J-M . 2012 . Multi-species biofilms: how to avoid unfriendly neighbors . FEMS Microbiology Reviews , 36 : 972 – 989 .
  • Seipke , R F , Kaltenoth , M and Hutchings , M I . 2012 . Streptomyces as symbionts: an emerging and widespread theme? . FEMS Microbiology Reviews , 36 : 862 – 876 .
  • Smith , J A , Lovley , D R and Tremblay , P-L . 2013 . Outer cell surface components essential for Fe(III) oxide reduction by Geobacter metallireducens . Appl Environ Microbiol , 79 : 901 – 907 .
  • Sogge , H , Rohrlack , T , Rounge , T B , Sønsteba , J H , Tooming-Klunderud , T and Jakobsen , K S . 2013 . Gene flow, recombination, and selection of cyanobacteria: Population structure of geographically related Planktothrix freshwater strains . Appl Environ Microbiol , 79 : 508 – 515 .
  • Sutton , N B , Maphosa , F , Morillo , J A , Al-Soud , W A , Langenhoff , A MA , Grotenhuis , T , Rijnaarts , H HM and Smidt , H . 2013 . Impact of long-term diesel contamination on soil microbial community structure . Appl Environ Microbiol , 79 : 619 – 630 .
  • Tachikawa , K , Toyofuku , T , Basile-Doetsch , I and Delhaye , T . 2013 . Microscale neodymium distribution in sedimentary planktonic foraminiferal tests and associated mineral phases . Geochim Cosmochim Acta , 100 : 11 – 23 .
  • Tang , C , Madigan , M T and Lanoil , B . 2013 . Bacterial and archaeal diversity in sediments of West Lake Bonney, McMurdo Dry Valley, Antarctica . Appl Environ Microbiol , 79 : 1034 – 1038 .
  • Tang , S , Chan , W WM , Fletcher , K E , Seifert , J , Liang , X , Löffler , F E , Edwards , E A and Adrian , L . 2013 . Functional characterization of reductive dehalogenases by using blue native polyacrylamide gel electrophoresis . Appl Environ Microbiol , 79 : 974 – 981 .
  • Toyoda , K and Tebo , B M . 2013 . The effect of Ca2+ ions and ionic strength on Mn(II) oxidation by spores of the marine Bacillus sp. SG-1 . Geochim Cosmochim Acta , 101 : 1 – 11 .
  • Von der Heyden , B P , Roychoudhury , A N , Mtshali , T N , Tyliszczak , T and Myneni , S CB . 2012 . Chemically and geographically distinct soli-phase iron pools in the Southern Ocean . Science , 338 : 1199 – 1201 .
  • Wang , Z , Lee , S-W , Kapoor , P , Tebo , F M and Giammar , D E . 2013 . Uraninite oxidation and dissolution induced by manganese oxide: A reodox reaction between two insoluble minerals . Geochim Cosmochim Acta , 100 : 24 – 40 .
  • Wu , J-H , Wu , F-Y , Chuang , H-P , Chen , W-Y , Huang , H-J , Chen , S-H and Liu , W-T . 2013 . Community and Proteomic analysis of methanogenic consortia degrading terephthalate . Appl Environ Microbiol , 79 : 105 – 112 .
  • Yamane , K , Matsuyama , S , Igarashi , K , Utsumi , M , Shiraiwa , Y and Kuwabara , T . 2013 . Anaerobic coculture of microalgae with Thermosipho globiformans and Methanocaldococcus jannaschii at 68°C enhances generation of n-alkane-rich biofuels after pyrolysis . Appl Environ Microbiol , 79 : 924 – 930 .
  • Youngblut , N D , Shade , A , Read , J S , McMahon , K D and Whitaker , RJ . 2013 . Lineage-specific responses of microbial communities in environmental change . Appl Environ Microbiol , 79 : 39 – 47 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.