Smectite Reduction by Shewanella Species as Facilitated by Cystine and Cysteine

References

• Amonette , J E and Templeton , J C . 1998 . Improvements to the quantitative assay of nonrefractory minerals for Fe(II) and total Fe using 1,10-phenanthroline . Clays Clay Miner , 46 : 51 – 62 .
   Web of Science ®Google Scholar
• Bishop , M E , Dong , H , Kukkadapu , R K , Liu , C and Edelmann , R E . 2011 . Bioreduction of Fe-bearing clay minerals and their reactivity toward pertechnetate (Tc-99) . Geochim Cosmochim Acta , 75 : 5229 – 5246 .
   Web of Science ®Google Scholar
• Bremner , JM. 1950 . Amino-acids in soil . Nature , 165 : 367
   Web of Science ®Google Scholar
• Cornell , R M and Schwertmann , U . 2003 . The iron oxides: structure, properties, reactions, occurrences, and uses , New York : VCH Publishers, Chapter 1 .
   Google Scholar
• Dong , H. 2012 . Clay-microbe interactions and implications for environmental mitigation . Elements , 8 : 95 – 100 .
   Web of Science ®Google Scholar
• Dong , H , Kostka , J E and Kim , J . 2003 . Microscopic evidence for microbial dissolution of smectite . Clays Clay Miner , 51 : 502 – 512 .
   Web of Science ®Google Scholar
• Dong , H , Jaisi , D P , Kim , J and Zhang , G . 2009 . Microbe-clay mineral interactions . Am Miner , 94 : 1505 – 1519 .
   Web of Science ®Google Scholar
• Dong , H , Peacor , D R and Freed , R L . 1997 . Phase relations among smectite, R1 illite-smectite, and illite . Am Miner , 82 : 379 – 391 .
   Web of Science ®Google Scholar
• Doong , R and Schink , B . 2002 . Cysteine-mediated reductive dissolution of poorly crystalline iron(III) oxides by Geobacter sulfurreducens . Environ Sci Technol , 36 : 2939 – 2945 .
   PubMed Web of Science ®Google Scholar
• Eslinger , E , Highsmith , P , Albers , D and deMayo , B . 1979 . Role of iron reduction in the conversion of smectite to illite in bentonites in the disturbed belt, Montana . Clays Clay Miner , 27 : 327 – 338 .
   Web of Science ®Google Scholar
• Favre , F , Stucki , J W and Boivin , P . 2006 . Redox properties of structural Fe in ferruginous smectite. A discussion of the standard potential and its environmental implications . Clays Clay Miner , 54 : 466 – 472 .
   Web of Science ®Google Scholar
• Freney , JR. 1960 . The oxidation of cysteine to soleplate in soil . Aust J Biol Sci , 13 : 387 – 392 .
   Google Scholar
• Frissel , M and Bolt , G H . 1962 . Interaction between certain ionizable organic compounds (herbicides) and clay minerals . Soil Sci , 94 : 284 – 291 .
   Google Scholar
• Gorby , Y A , Yanina , S , Mclean , J S , Rosso , K M , Moyles , D , Dohnalkova , A Beveridge , T J . 2006 . Electrically conductive bacterial nanowires produced by Shewanella oneidensis strain MR-1 and other microorganisms . Proc Nat Acad Sci USA , 103 : 11358 – 11363 .
   PubMed Web of Science ®Google Scholar
• Hernandez , M E and Newman , D K . 2001 . Extracellular electron transfer . Cell Mol Life Sci , 58 : 1562 – 1571 .
   PubMed Web of Science ®Google Scholar
• Hower , J , Eslinger , E W , Hower , M H and Perry , E A . 1976 . Mechanism of burial metamorphism of argillaceous sediments. 1. Mineralogical and chemical evidence . Geol Soc Amer Bull , 87 : 725 – 737 .
   Web of Science ®Google Scholar
• Huggett , J M and Guadro , J . 2005 . Low-temperature illitization of smectite in the late Eocene and early Oligocene of the Isle of Wight (Hampshire basin), U.K . Am Miner , 90 : 1192 – 1202 .
   Web of Science ®Google Scholar
• Jaisi , D P , Dong , H and Liu , C . 2007 . Influence of biogenic Fe(II) on the extent of microbial reduction of Fe(III) in clay minerals nontronite, illite and chlorite . Geochim Cosmochim Acta , 71 : 1145 – 1158 .
   Web of Science ®Google Scholar
• Jaisi , D P , Eberl , D D , Dong , H and Kim , J . 2011 . The formation of illitefrom nontronite bymesophilic and thermophilic bacterial reaction . Clays Clay Miner , 59 : 21 – 33 .
   Web of Science ®Google Scholar
• Jaisi , D P , Kukkadapu , R K , Eberl , D D and Dong , H . 2005 . Control of Fe(III) site occupancy on the rate and extent of microbial reduction of Fe(III) in nontronite . Geochim Cosmochim Acta , 69 : 5429 – 5440 .
   Web of Science ®Google Scholar
• Joeckel , R M and Clement , B JA . 2005 . Soils, surficial geology, and geomicrobiology of saline-sodic wetland, North Plette River Valley, Nebraska, U.S.A . Catena , 61 : 63 – 101 .
   Web of Science ®Google Scholar
• Kaden , J , Galushko , A S and Schink , B . 2000 . Cysteine-mediated electron transfer in syntrophic acetate oxidation by cocultures of Geobacter sulfurreducens and Wolinella succinogenes . Arch Microbiol , 178 : 53 – 58 .
   Web of Science ®Google Scholar
• Keeling , J L , Raven , M D and Gates , W P . 2000 . Geology and characterization of two hydrothermal nontronites from weathered metamorphic rocks at the Uley Graohite Mine, South Australia . Clays Clay Miner , 48 : 537 – 548 .
   Web of Science ®Google Scholar
• Kim , J , Dong , H , Seabaugh , J , Newell , S W and Eberl , D D . 2004 . Role of microbes in the smectite-to-illite reaction . Science , 303 : 830 – 832 .
   PubMed Web of Science ®Google Scholar
• Komadel , P , Madejová , J and Stucki , J W . 2006 . Strucural Fe(III) reduction in smectites . Appl Clay Sci , 34 : 88 – 94 .
   Web of Science ®Google Scholar
• Kostka , J E , Haefele , E , Viehweger , R and Stucki , J W . 1999 . Respiration and dissolution of iron(III)-containing clay minerals by bacteria . Environ Sci Technol , 33 : 3127 – 3133 .
   Web of Science ®Google Scholar
• Lee , K , Kostka , J E and Stucki , J W . 2006 . Comparaisons of structural Fe reduction in smectites by bacteria and dithionite: an infrared spectroscopic study . Clays Clay Miner , 54 : 195 – 208 .
   Web of Science ®Google Scholar
• Liu , D , Dong , H , Bishop , M E , Wang , H , Agrawal , A , Tritschler , S , Eberl , D D and Xie , S . 2011 . Reduction of structural Fe(III) in nontronite by methanogen Methanosarcina barkeri . Geochim Cosmochim Acta , 75 : 1057 – 1071 .
   Web of Science ®Google Scholar
• Liu , D , Dong , H , Bishop , M E , Zhang , J , Wang , H , Xie , S , Wang , S , Huang , L and Eberl , D D . 2012 . Microbial reduction of structural iron in interstratidied illite-smectite mienrals by a sulfate-reducing bacterium . Geobiology , 10 : 150 – 162 .
   PubMed Web of Science ®Google Scholar
• Lovley , D R , Coates , J D , Blunt-Harris , E L , Phillips , E JP and Woodward , J C . 1996 . Humic substances as electron acceptors for microbial respiration . Nature , 382 : 445 – 447 .
   Web of Science ®Google Scholar
• Lovley , D R , Kashefi , K , Vargas , M , Tor , J M and Blunt-Harris , E L . 2000 . Reduction of humic substances and Fe(III) by hyperthermophilic microorganisms . Chem Geol , 169 : 289 – 298 .
   Web of Science ®Google Scholar
• Lovley , D R , Holmes , D E and Nevin , K P . 2004 . Dissimilatory Fe(III) and Mn(IV) reduction . Adv Microb Physiol , 49 : 219 – 286 .
   PubMed Web of Science ®Google Scholar
• Maithreepala , R A and Doong , R . 2009 . Transformation of carbon terachloride by biogenic iron species in the presence of Geobacter sulfurreducens and electron shuttles . J Hazard Materi , 164 : 337 – 344 .
   PubMed Web of Science ®Google Scholar
• Marsili , E , Baron , D B , Shikhare , I D , Coursolle , D , Gralnick , J A and Bond , D R . 2008 . Shewanella secretes flavins that mediate extracellular electron transfer . Proc Nat Aca Sci USA , 105 : 3968 – 3973 .
   PubMed Web of Science ®Google Scholar
• Masuda , H , Peacor , D R and Dong , H . 2001 . Transmission electron microscopy study of conversion of smectite to illite in mudstones of the Nankai Trough: Contrast with coeval bentonites . Clays Clay Miner , 49 : 109 – 118 .
   Web of Science ®Google Scholar
• McCarty , D K , Sakharov , B A and Drits , V A . 2009 . New insights into smectite illitization: A zoned K-bentonite revisted . Am Miner , 94 : 1653 – 1671 .
   Web of Science ®Google Scholar
• Moore , D M and Reynolds , R C Jr . 1997 . X-Ray Diffraction and the Identification and Analysis of Clay Minerals , New York : Oxford University Press . Chapters 1–3
   Google Scholar
• Moreau , J W , Weber , P K , Martin , M C , Gilbert , B , Hutcheon , I D and Banfield , J F . 2007 . Extracellular proteins limit the dispersal of biogenic nanoparticles . Science , 316 : 1600 – 1603 .
   PubMed Web of Science ®Google Scholar
• Nealson , K and Scott , J . 2006 . Ecophysiology of the genus Shewanella . Prokaryotes , 6 : 1133 – 1151 .
   Google Scholar
• Nevin , K P and Lovley , D R . 2000 . Potential for nonenzymatic reduction of Fe(III) via electron shuttling in subsurface sediments . Environ Sci Technol , 34 : 2472 – 2478 .
   Web of Science ®Google Scholar
• Niu , B and Ishida , H . 2000 . Different rates of smectite illitization in mudstones and sandstones from the Niigata basin, Japan . Clay Miner , 35 : 163 – 173 .
   Web of Science ®Google Scholar
• O’Loughlin , EJ. 2008 . Effects of eletron transfer mediators on the bioreduction of lepidocrocite (γ-FeOOH) by Shewanella putrefaciens CN32 . Environ Sci Technol , 42 : 6878 – 6882 .
   Web of Science ®Google Scholar
• Pevear , DR. 1999 . Illite and hydrocarbon exploration . Proc Nat Aca Sci USA , 96 : 3440 – 3446 .
   PubMed Web of Science ®Google Scholar
• Rau , J , Knackmuss , H and Stolz , A . 2002 . Effects of differrent quinoid redox mediators on the anaerobic reduction of azo dyes by bacteria . Environ Sci Technol , 36 : 1497 – 1504 .
   PubMed Web of Science ®Google Scholar
• Ribeiro , F R , Fabris , J D , Kostka , J E , Komadel , P and Stucki , J W . 2009 . Comparisons of structural iron reduction in smectites by bacteria and dithionite: II. A variable-temperature Mössbauer spectroscopic study of Garfield nontronite . Pure Appl Chem , 81 : 1499 – 1509 .
   Web of Science ®Google Scholar
• Roden , E E , Kappler , A , Bauer , I , Jiang , J , Paul , A , Stoesser , R , Konishi , H and Xu , H . 2010 . Extracelular electron transfer through microbial reduction of solid-phase humic substances . Nat Geosci , 3 : 417 – 421 .
   Web of Science ®Google Scholar
• Roden , E E and Urrutia , M M . 2002 . Influence of biogenic Fe(II) on bacterial crystalline Fe(III) oxide reduction . Geomicrobiol J , 19 : 209 – 251 .
   Web of Science ®Google Scholar
• Roden , E E and Zachara , J M . 1996 . Microbial reduction of crystalline iron(III) oxides: influence of oxide surface area and potential for cell growth . Environ Sci Technol , 30 : 1618 – 1628 .
   Web of Science ®Google Scholar
• Senwo , Z N and Tabatabai , M A . 1998 . Amino acid composition of soil organic matter . Biol Fertil Soils , 26 : 235 – 242 .
   Web of Science ®Google Scholar
• Shea , D and MacCrehan , W A . 1988 . Determination of hydrophilic thiols in sediment porewater using ion-pair liquid chromatography coupled to electrochemical detection . Anal Chem , 60 : 1449 – 1454 .
   Web of Science ®Google Scholar
• Sposito , G , Skipper , N T , Sutton , R , Park , S H , Soper , A K and Greathouse , J A . 1999 . Surface geochemistry of the clay minerals . Proc Nat Aca Sci USA , 96 : 3358 – 3364 .
   PubMed Web of Science ®Google Scholar
• Stanjek , H and Marchel , C . 2008 . Linking the redox cycles of Fe oxides and Fe-rich clay minerals: an example from a palaeosol of the Upper Freshwater Molasse . Clay Miner , 43 : 69 – 82 .
   Web of Science ®Google Scholar
• Stucki , J W and Kostka , J E . 2006 . Microbial reducion of iron in smectite . Compr Rend Geoscience , 338 : 468 – 475 .
   Web of Science ®Google Scholar
• Sulochana , MCB. 1962 . Amino acids in root exudates of cotton . Plant Soil , 16 : 312 – 326 .
   Google Scholar
• Taylor , R W , Shen , S , Bleam , W F and Tu , S . 2000 . Chromate removal by dithionite-reduced clays: evidence from direct X-ray adsorption near edge spectroscopy (XANES) of chromate reduction at clay surface . Clays Clay Miner , 48 : 648 – 654 .
   Web of Science ®Google Scholar
• Vorhies , J S and Gaines , R R . 2009 . Microbial dissolution of clay minerals as a source of iron and silica in marine sediments . Nat Geosci , 2 : 221 – 225 .
   Web of Science ®Google Scholar
• Weber , K , Achenbach , L A and Coates , J D . 2006 . Microorganisms pumping iron: anaerobic microbial iron oxidation and reduction . Nat Rev Microbiol , 4 : 752 – 764 .
   PubMed Web of Science ®Google Scholar
• Zhang , G , Burgos , W D , Senko , J M , Bishop , M E , Dong , H , Boyanov , M I and Kemner , K M . 2011 . Microbial reduction of clorite and uranium followed by air oxidation . Chem Geol , 283 : 242 – 250 .
   Web of Science ®Google Scholar
• Zhang , G , Dong , H , Kim , J and Eberl , D D . 2007b . Microbial reduction of structural Fe3+in nontronite by a thermophilic bacterium and its role in promoting the smectite to illite reaction . Am Miner , 92 : 1411 – 1419 .
   Web of Science ®Google Scholar
• Zhang , G , Kim , J , Dong , H and Sommer , A J . 2007a . Microbial effects in promoting the smectite to illite reaction: Role of organic matter intercalated in the interlayer . Am Miner , 92 : 1401 – 1410 .
   Web of Science ®Google Scholar