Effects of Copper, Nickel, and Sulfate from the Smelters at Sudbury, Ontario (Canada) on Microbial Communities in Lakes

References

• Atlas RM, Bartha R. 1993. Microbial Ecology. Redwood City: Benjamin/Cummings.
   Google Scholar
• Babich H, Stotzky G. 1983. Influence of chemical speciation on the toxicity of heavy metals to the microbiota. In: Nriagu JO, editor. Aquatic Toxicology. New York: John Wiley & Sons, p 1–46.
   Google Scholar
• Bateman AM. 1950. Economic Mineral Deposits, 2nd ed. New York: John Wiley & Sons.
   Google Scholar
• Beamish RJ, McFarlane GA, Van Loon JC, Lichwa J. 1975. An examination of the possible effects of Sudbury nickel mining and smelting operations on fishes and the water chemistry of lakes within the Whitefish Lake Indian Reserve. Tech Report no. 579, Fisheries and Marine Service, Government of Canada.
   Google Scholar
• Beveridge TJ. 1989. Metal ions and bacteria. In: Beveridge TJ, Doyle RJ, editors. Metal Ions and Bacteria. New York: John Wiley & Sons, p 1–29.
   Google Scholar
• Beveridge TJ, Fyfe WS. 1985. Metal fixation by bacterial cell walls. Can J Earth Sci 22:1893–1898.
   Web of Science ®Google Scholar
• Bobbie RJ, White DC. 1980. Characterization of benthic microbial community structure by high-resolution gas chromatography of fatty acid methyl esters. Appl Environ Microbiol 39:1212–1222.
   PubMed Web of Science ®Google Scholar
• Borgmann U, Jackson TA, Reynoldson TB, Rosa F. 1998. Interim report on the effects of atmospheric deposition of metals from the Sudbury smelters on aquatic benthic ecosystems. NWRI Contribution no. 98-230. National Water Research Institute, Canada Centre for Inland Waters, Burlington, ON, Canada.
   Google Scholar
• Borgmann U, Norwood WP, Reynoldson TB, Rosa F. 2001a. Identifying cause in sediment assessments: bioavailability and the Sediment Quality Triad. Can J Fish Aquat Sci 58:950–960.
   Web of Science ®Google Scholar
• Borgmann U, Reynoldson TB, Rosa F, Norwood WP. 2001b. Final report on the effects of atmospheric deposition of metals from the Sudbury smelters on aquatic ecosystems. NWRI Contribution no. 01-023. National Water Research Institute, Canada Centre for Inland Waters, Burlington, ON, Canada.
   Google Scholar
• Brock TD. 1966. Principles of Microbial Ecology. Englewood Cliffs (NJ): Prentice-Hall.
   Google Scholar
• Burdige DJ, Kline SW, Chen W. 2004. Fluorescent dissolved organic matter in marine sediment pore waters. Marine Chem 89:289–311.
   Web of Science ®Google Scholar
• Chan WH, Vet RJ, Lusis MA, Skelton GB. 1983. Airborne particulate size distribution measurements in nickel smelter plumes. Atmos Environ 17:1173–1181.
   Web of Science ®Google Scholar
• Chen Y, Senesi N, Schnitzer M. 1977. Information provided on humic substances by E4/E6 ratios. Soil Sci Soc Am J 41:352–358.
   Web of Science ®Google Scholar
• Collins YE, Stotzky G. 1989. Factors affecting the toxicity of heavy metals to microbes. In: Beveridge TJ, Doyle RJ, editors. Metal Ions and Bacteria. New York: John Wiley & Sons, p 31–90.
   Google Scholar
• Doyle RJ. 1989. How cell walls of Gram-positive bacteria interact with metal ions. In: Beveridge TJ, Doyle RJ, editors. Metal Ions and Bacteria. New York: John Wiley & Sons, p 275–293.
   Google Scholar
• Duxbury T. 1986. Microbes and heavy metals: an ecological overview. Microbiol Sci 3:330–333.
   PubMedGoogle Scholar
• Ellis RJ, Morgan P, Weightman AJ, Fry JC. 2003. Cultivation-dependent and -independent approaches for determining bacterial diversity in heavy-metal-contaminated soil. Appl Environ Microbiol 69:3223–3230.
   PubMed Web of Science ®Google Scholar
• Ertel JR, Hedges JI. 1983. Bulk chemical and spectroscopic properties of marine and terrestrial humic acids, melanoidins and catechol-based synthetic polymers. In: Christman RF, Gjessing ET, editors. Aquatic and Terrestrial Humic Materials. Ann Arbor: Ann Arbor Science (Butterworth Group), p 143–163.
   Google Scholar
• Ferris FG. 1989. Metallic ion interactions with the outer membrane of Gram-negative bacteria. In: Beveridge TJ, Doyle RJ, editors. Metal Ions and Bacteria. New York: John Wiley & Sons, p 295–323.
   Google Scholar
• Förstner U. 1991. Soil pollution phenomena – mobility of heavy metals in contaminated soil. In: Bolt GH, De Boodt MF, Hayes MHB, McBride MB, De Strooper EBA, editors. Interactions at the Soil Colloid-Soil Solution Interface. Dordrecht: Kluwer, p 543–582.
   Google Scholar
• Frostgård Å., Tunlid A., Bååth E. 2011. Use and misuse of PLFA measurements in soils. Soil Biol Biochem 43:1621–1625.
   Web of Science ®Google Scholar
• Gächter R, Meyer JS, Mares A. 1988. Contribution of bacteria to release and fixation of phosphorus in lake sediments. Limnol Oceanogr 33:1542–1558.
   Web of Science ®Google Scholar
• Gupta SK, Chen KY. 1975. Partitioning of trace elements in selective chemical fractions of nearshore sediments. Environ Lett 10:129–158.
   PubMed Web of Science ®Google Scholar
• Haglund A-L, Lantz P, Törnblom E, Tranvik L. 2003. Depth distribution of active bacteria and bacterial activity in lake sediment. FEMS Microbiol Ecol 46:31–38.
   PubMed Web of Science ®Google Scholar
• Hamelink JL, Landrum PF, Bergman HL, Benson WH, editors. 1994. Bioavailability: Physical, Chemical, and Biological Interactions. Boca Raton (FL): CRC Press.
   Google Scholar
• Jackson TA. 1978. The biogeochemistry of heavy metals in polluted lakes and streams at Flin Flon, Canada, and a proposed method for limiting heavy metal pollution of natural waters. Environ Geol 2:173–189.
   Web of Science ®Google Scholar
• Jackson TA. 1988. The mercury problem in recently formed reservoirs of northern Manitoba (Canada): effects of impoundment and other factors on the production of methyl mercury by microorganisms in sediments. Can J Fish Aquat Sci 45:97–121.
   Web of Science ®Google Scholar
• Jackson TA. 1989. The influence of clay minerals, oxides, and humic matter on the methylation and demethylation of mercury by micro-organisms in freshwater sediments. Appl Organometallic Chem 3:1–30.
   Google Scholar
• Jackson TA. 1991a. Biological and environmental control of mercury accumulation by fish in lakes and reservoirs of northern Manitoba, Canada. Can J Fish Aquat Sci 48:2449–2470.
   Web of Science ®Google Scholar
• Jackson TA. 1991b. Effects of heavy metals and selenium on mercury methylation and other microbial activities in freshwater sediments. In: Vernet J-P, editor. Heavy Metals in the Environment. Amsterdam: Elsevier, p 191–217.
   Google Scholar
• Jackson TA. 1993. The influence of phytoplankton blooms and environmental variables on the methylation, demethylation, and bio-accumulation of mercury (Hg) in a chain of eutrophic mercury-polluted riverine lakes in Saskatchewan, Canada. In: Allan RJ, Nriagu JO, editors. Heavy Metals in the Environment (Proc Int. Conf, Toronto, Canada, Sept. 1993), vol. 2, p 301–304.
   Google Scholar
• Jackson TA, Bistricki T. 1995. Selective scavenging of copper, zinc, lead, and arsenic by iron and manganese oxyhydroxide coatings on plankton in lakes polluted with mine and smelter wastes: results of energy dispersive X-ray micro-analysis. J Geochem Explor 52:97–125.
   Web of Science ®Google Scholar
• Jackson TA, Leppard GG. 2002. Energy dispersive X-ray microanalysis and its applications in biogeochemical research. In: Violante A, Huang PM, Bollag J-M, Gianfreda L, editors. Soil Mineral-Organic Matter-Microorganism Interactions and Ecosystem Health (Developments in Soil Science, vol. 28A). Amsterdam: Elsevier, p 219–260.
   Google Scholar
• Jackson TA, Nguyen N. 1998. Metal speciation in relation to sediment toxicity. In: Borgmann U, Jackson TA, Reynoldson TB, Rosa F, editors. Interim report on the effects of atmospheric deposition of metals from the Sudbury smelters on aquatic benthic ecosystems. NWRI Contribution no. 98-230. National Water Research Institute, Canada Centre for Inland Waters, Burlington, ON, Canada, p 41–84 and 127–140.
   Google Scholar
• Jackson TA, Reynoldson TB, Zhou K, Nguyen N, Rosa F, Mudroch A. 1995. Selective toxic effects of heavy metals on reproductive activities of the oligochaete Tubifex tubifex in lake sediments polluted with mine tailings. In: Wilken R-D, Förstner U. Knöchel A, editors, Heavy Metals in the Environment, vol. 2 (Proc. Int. Conf, Hamburg, Germany, Sept. 1995). CEP Consultants Ltd, Edinburgh, Scotland, p 13–16.
   Google Scholar
• Jackson TA, Telmer KH, Muir DCG. 2013. Mass-dependent and mass-independent variations in the isotope composition of mercury in cores from lakes polluted by a smelter: Effects of smelter emissions, natural processes, and their interactions. Chem Geol 352:27–46.
   Web of Science ®Google Scholar
• Jackson TA, Vlaar S, Nguyen N, Leppard GG, Finan TM. 2015. Effects of bioavailable heavy metal species, arsenic, and acid drainage from mine tailings on a microbial community sampled along a pollution gradient in a freshwater ecosystem. Geomicrobiol J 32:724–750.
   Web of Science ®Google Scholar
• Jackson TA, West MM, Leppard GG. 2011. Accumulation and partitioning of heavy metals by bacterial cells and associated colloidal minerals, with alteration, neoformation, and selective adsorption of minerals by bacteria, in metal-polluted lake sediment. Geomicrobiol J 28:23–55.
   Web of Science ®Google Scholar
• Keller W, Heneberry JH, Gunn JM. 1999. Effects of emission reductions from the Sudbury smelters on the recovery of acid- and metal-damaged lakes. J Aquat Ecosyst Stress Recovery 6:189–198.
   Google Scholar
• Keller W, Heneberry J, Gunn JM, Snucins E, Morgan G, Leduc J. 2004. Recovery of acid and metal-damaged lakes near Sudbury Ontario: trends and status. Supporting Report for the Ecological Risk Assessment, Sudbury Soils Study; prepared for the SARA Group, Guelph, ON, Canada. Cooperative Freshwater Ecology Unit, Department of Biology, Laurentian University, Sudbury, ON, Canada.
   Google Scholar
• Khan S, Hesham AE-L, Qiao M, Rehman S, He J-Z. 2010. Effects of Cd and Pb on soil microbial community structure and activities. Environ Sci Pollut Res 17:288–296.
   PubMed Web of Science ®Google Scholar
• Lee H-B, Peart TE. 1991. Determination of resin and fatty acids in sediments near pulp mill locations. J Chromatogr 547:315–323.
   PubMed Web of Science ®Google Scholar
• Leeben A, Mikomägi A, Lepane V, Alliksaar T. 2014. Fluorescence spectroscopy of sedimentary pore-water humic substances: a simple tool for retrospective analysis of lake ecosystems. J Soils Sediments 14:269–279.
   Web of Science ®Google Scholar
• Leeben A, Tõnno I, Freiberg R, Lepane V, Bonningues N, Makarõtševa N, Heinsalu A, Alliksaar T. 2008. History of anthropogenically mediated eutrophication of Lake Peipsi as revealed by the stratigraphy of fossil pigments and molecular size fractions of pore-water dissolved organic matter. Hydrobiol 599:49–58.
   Web of Science ®Google Scholar
• Lide DR, editor. 2004. CRC Handbook of Chemistry and Physics. 85th ed. Boca Raton (FL): CRC Press.
   Google Scholar
• Lindgren W. 1933. Mineral Deposits, 4th ed. New York: McGraw-Hill.
   Google Scholar
• Liu D, Strachan WMJ. 1981. A field method for determining the chemical and biological activity of sediments. Water Res 15:353–359.
   Web of Science ®Google Scholar
• Montvydienė D, Marčiulionienė D. 2007. Assessment of toxic interaction of metals in binary mixtures using Lepidium sativum and Spirodela polyrrhiza. Polish J Environ Stud 16:777–783.
   Web of Science ®Google Scholar
• Mullen MD, Wolf DC, Ferris FG, Beveridge TJ, Flemming CA, Bailey GW. 1989. Bacterial sorption of heavy metals. Appl Environ Microbiol 55:3143–3149.
   PubMed Web of Science ®Google Scholar
• Novitsky JA. 1987. Microbial growth rates and biomass production in a marine sediment: evidence for a very active but mostly nongrowing community. Appl Environ Microbiol 53:2368–2372.
   PubMed Web of Science ®Google Scholar
• Nriagu JO, Wong HKT, Coker RD. 1982. Deposition and chemistry of pollutant metals in lakes around the smelters at Sudbury, Ontario. Environ Sci Technol 16:551–560.
   PubMed Web of Science ®Google Scholar
• Parker JH, Smith GA, Frederickson HL, Vestal JR, White DC. 1982. Sensitive assay, based on hydroxyl fatty acids from lipopolysaccharide lipid A, for gram-negative bacteria in sediments. Appl Environ Microbiol 44:1170–1177.
   PubMed Web of Science ®Google Scholar
• Pennanen V. 1975. Humus fractions and their distribution in some lakes in Finland. In: Povoledo D, Golterman HL, editors. Humic Substances: Their Structure and Function in the Biosphere (Proc Int. Meeting, Nieuwersluis, the Netherlands, 29–31 May, 1972). Wageningen: Centre for Agricultural Publishing and Documentation, p 207–215.
   Google Scholar
• Revenga JE, Campbell LM, Arribére MA, Ribeiro Guevara S. 2012. Arsenic, cobalt and chromium food web biodilution in a Patagonia mountain lake. Ecotoxicol Environ Saf 81:1–10.
   PubMed Web of Science ®Google Scholar
• Salfeld JC. 1975. Ultraviolet and visible absorption spectra of humic systems. In: Povoledo D, Golterman HL, editors. Humic Substances: Their Structure and Function in the Biosphere (Proc Int. Meeting, Nieuwersluis, the Netherlands, 29–31 May, 1972). Wageningen: Centre for Agricultural Publishing and Documentation, p 269–280.
   Google Scholar
• Schnitzer M, Khan SU. 1972. Humic Substances in the Environment. New York: Marcel Dekker.
   Google Scholar
• Šmejkalová M, Mikanová O, Borůvka L. 2003. Effects of heavy metal concentrations on the biological activity of soil micro-organisms. Plant Soil Environ 49:321–326.
   Web of Science ®Google Scholar
• Stainton MP, Capel MJ, Armstrong FAJ. 1977. The Chemical Analysis of Fresh Water, 2nd ed. Fish Mar Serv Misc Spec Publ 25. Dept. of Fisheries & Oceans, Government of Canada.
   Google Scholar
• Stevenson FJ. 1982. Humus Chemistry: Genesis, Composition, Reactions. New York: John Wiley & Sons.
   Google Scholar
• Stolp H. 1988. Microbial Ecology. Cambridge: Cambridge University Press.
   Google Scholar
• Strickland JDH, Parsons TR. 1968. A practical handbook of seawater analysis. Bull Fish Res Board Canada 167:1–311.
   Google Scholar
• Tessier A, Campbell PGC, Bisson M. 1979. Sequential extraction procedure for the speciation of particulate trace metals. Anal Chem 51:844–851.
   Web of Science ®Google Scholar
• Tessier A, Couillard Y, Campbell PGC, Auclair JC. 1993. Modeling Cd partitioning in oxic lake sediments and Cd concentrations in the freshwater bivalve Anodonta grandis. Limnol Oceanogr 38:1–17.
   Web of Science ®Google Scholar
• Togna MT, Kazumi J, Apitz S, Kirtay V, Young LY. 2001. Effect of sediment toxicity on anaerobic microbial metabolism. Environ Toxicol Chem 20:2406–2410.
   PubMed Web of Science ®Google Scholar
• Torsvik V, Øvreås L, Thingstad TF. 2002. Prokaryotic diversity – magnitude, dynamics, and controlling factors. Science 296:1064–1066.
   PubMed Web of Science ®Google Scholar
• Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM. 2005. Comparative metagenomics of microbial communities. Science 308:554–557.
   PubMed Web of Science ®Google Scholar
• Tsai Y-P, You S-J, Chen K-W. 2005. Effect of cadmium on composition and diversity of bacterial communities in activated sludges. Int Biodeterior Biodegrad 55:285–291.
   Web of Science ®Google Scholar
• Watanabe K, Monaghan MT, Takemon Y, Omura T. 2008. Biodilution of heavy metals in a stream macroinvertebrate food web: evidence from stable isotope analysis. Sci Total Environ 394:57–67.
   PubMed Web of Science ®Google Scholar
• White DC, Bobbie RJ, King JD, Nickels J, Amoe P. 1979a. Lipid analysis of sediments for microbial biomass and community structure. In: Litchfield CD, Seyfried PL, editors. Methodology for Biomass Determinations and Microbial Activities in Sediments (ASTM STP 673). American Society for Testing and Materials. p 87–103.
   Google Scholar
• White DC, Davis WM, Nickels JS, King JD, Bobbie RJ. 1979b. Determination of the sedimentary microbial biomass by extractible lipid phosphate. Oecologia 40:51–62.
   PubMed Web of Science ®Google Scholar
• Williams DR. 1971. The Metals of Life. New York: van Nostrand Reinhold.
   Google Scholar
• Woodfine DG, Havas M, Acreman J. 2002. Nickel and copper tolerance of phytoplankton isolated from a recovering lake near Sudbury, Canada. Geochem: Explor Environ Anal 2:203–207.
   Google Scholar
• Yan ND. 1979. Phytoplankton community of an acidified, heavy metal-contaminated lake near Sudbury, Ontario: 1973–1977. Water Air Soil Pollut 11:43–55.
   Web of Science ®Google Scholar
• Zhang H-B, Yang M-X, Shi W, Zheng Y, Sha T, Zhao Z-W. 2007. Bacterial diversity in mine tailings compared by cultivation and cultivation-independent methods and their resistance to lead and cadmium. Microb Ecol 54:705–712.
   PubMed Web of Science ®Google Scholar