Considerable Bacterial Community Structure Coupling with Extracellular Electron Transfer at Karst Area Stone in Yunnan, China

References

• Bennani Y, El-Kalliny AS, Appel PW, et al. 2014. Enhanced solar light photoelectrocatalytic activity in water by anatase-to-rutile TiO2 transformation. J Adv Oxid Technol. 17(2):285–296.
   Web of Science ®Google Scholar
• Boston PJ, Spilde MN, Northup DE, et al. 2008. Biogenic Fe/Mn oxides in caves and surface desert varnish: potential biosignatures for Earth and Mars. Astrobiology. 8:448.
   Google Scholar
• Cappitelli F, Principi P, Pedrazzani R, Toniolo L, Sorlini C. 2007. Bacterial and fungal deterioration of the Milan Cathedral marble treated with protective synthetic resins. Sci Total Environ 385:172–181. doi:10.1016/j.scitotenv.2007.06.022.
   PubMed Web of Science ®Google Scholar
• Chanyi R M, Koval S F. 2014, Role of type IV pili in predation by Bdellovibrio bacteriovorus. PloS one, 9(11): e113404.
   PubMed Web of Science ®Google Scholar
• Dashper SG, Butler CA, Lissel JP. 2005. A novel Porphyromonas gingivalis FeoB plays a role in manganese accumulation. Biol Chem 280(30):28095–28102. doi:10.1074/jbc.M503896200.
   Web of Science ®Google Scholar
• De Faria DLA, Venâncio Silva S, De Oliveira MT. 1997. Raman microspectroscopy of some iron oxides and oxyhydroxides. J Raman Spectrosc. 28:873–878. doi:10.1002/(SICI)1097-4555(199711)28:11%3c873::AID-JRS177%3e3.0.CO;2-B.
   Web of Science ®Google Scholar
• De Mandal S, Panda A K, Bisht S S, et al. 2016. MiSeq HV4 16S rRNA gene analysis of bacterial community composition among the cave sediments of Indo-Burma biodiversity hotspot. Environ Sci Pollut R. 23(12): 12216–12226.
   Google Scholar
• Ding J, Zhang Y, Quan X, et al. 2015. Anaerobic biodecolorization of AO7 by a newly isolated Fe (III)-reducing bacterium Sphingomonas strain DJ. J Chem Technol Biot. 90(1):158–165. doi:10.1002/jctb.4301.
   Web of Science ®Google Scholar
• Dong HL, Rech JA, Jiang HC, Sun H, Buck BJ. 2007. Endolithic cyanobacteria in soil gypsum: occurrences in Atacama (Chile), Mojave (United States), and Al-Jafr Basin (Jordan) deserts. J Geophys Res. 112:G02030. doi:10.1029/2006JG000385.
   Web of Science ®Google Scholar
• Feng Q, Song YC, Bae BU. 2016. Influence of applied voltage on the performance of bioelectrochemical anaerobic digestion of sewage sludge and planktonic microbial communities at ambient temperature. Bioresource Technol. 220:500–508. doi:10.1016/j.biortech.2016.08.085.
   PubMed Web of Science ®Google Scholar
• Friedmann EI, Ocampo R. 1976. Endolithic blue-green algae in the Dry Valleys: primary producers in the Antarctic desert ecosystem. Science. 193:1247–1249. doi:10.1126/science.193.4259.1247.
   PubMed Web of Science ®Google Scholar
• Friedmann EI. 1982. Endolithic microorganisms in the Antarctic cold desert. Science. 215(4536):1045–1053. doi:10.1126/science.215.4536.1045.
   PubMed Web of Science ®Google Scholar
• Esposito A, Ahmed E, Ciccazzo S, et al. 2015. Comparison of rock varnish bacterial communities with surrounding non-varnished rock surfaces: taxon-specific analysis and morphological description. Microb Ecol 70(3):741–750. doi:10.1007/s00248-015-0617-4.
   PubMed Web of Science ®Google Scholar
• Garcia-Pichel F, Lopez-Cortes A, Nubel U. 2001. Phylogenetic and morphological diversity of cyanobacteria in soil desert crusts from the Colorado Plateau. Appl Environ Microbiol. 67(4):1902–1910.
   PubMed Web of Science ®Google Scholar
• Granina L, Müller B, Wehrli B. 2004. Origin and dynamics of Fe and Mn sedimentary layers in Lake Baikal. Chem. Geol. 205(1):55–72.
   Web of Science ®Google Scholar
• Häder DP. 1981. Electrical and proton gradients in the sensory transduction of photophobic responses in the blue-green alga, Phormidium uncinatum. Arch Microbiol. 130(1):83–86. doi:10.1007/BF00527077.
   Web of Science ®Google Scholar
• Hartshorne RS, Reardon CL, Ross D, et al. 2009, Characterization of an electron conduit between bacteria and the extracellular environment. P. Nat Acad Sci. 106(52):22169–22174. doi:10.1073/pnas.0900086106.
   PubMed Web of Science ®Google Scholar
• He XY, Wang KL, Yu YZ, et al. 2009. The responses of soil microbial taxonomic diversity on vegetation communities and seasons in karst area. Acta Ecol Sin. 29:1763–1769.
   Google Scholar
• He J, Zhang L, Jin S, et al. 2008. Bacterial communities inside and surrounding soil iron-manganese nodules. Geomicrobiol J. 25(1):14–24. doi:10.1080/01490450701829014.
   Web of Science ®Google Scholar
• Hofmann BA, Farmer JD. 2000. Filamentous fabrics in low temperature mineral assemblages: are they fossil biomarkers? Implications for the search for a subsurface fossil record on the early Earth and Mars. Planet Space Sci. 48:1077–1086. doi:10.1016/S0032-0633(00)00081-7.
   Web of Science ®Google Scholar
• Horath T, Bachofen R. 2009. Molecular characterization of an endolithic microbial community in dolomite rock in the Central Alps (Switzerland). Microb Ecol. 58(2):290–306. doi:10.1007/s00248-008-9483-7.
   PubMed Web of Science ®Google Scholar
• Hsu YK, Chen YC, Lin YG, et al. 2012. Birnessite-type manganese oxides nanosheets with hole acceptor assisted photoelectrochemical activity in response to visible light. J Mater Chem. 22 (6):2733–2739. doi:10.1039/C1JM14355G.
   Web of Science ®Google Scholar
• Huber JA, Welch DBM, Morrison HG, et al. 2007. Microbial population structures in the deep marine biosphere. Science. 318(5847):97–100. doi:10.1126/science.1146689.
   PubMed Web of Science ®Google Scholar
• Hughes KA, Lawley B. 2003. A novel Antarctic microbial endolithic community within gypsum crusts. Environ Microbiol. 5(7):555–565. doi:10.1046/j.1462-2920.2003.00439.x.
   PubMed Web of Science ®Google Scholar
• Jaag O. 1945. Untersuchungen uber die Vegetation und Biologie der Algen des nackten Gesteins in den Alpen, im Jura und im schweizerischen Mittelland. Beitr Kryptogamenflora Schweiz. 9:1–560.
   Google Scholar
• Jaki B, Orjala J, Heilmann J, et al. 2000. Novel extracellular diterpenoids with biological activity from the cyanobacterium Nostoc commune. J Nat Prod. 63(3):339–343. doi:10.1021/np9903090.
   PubMed Web of Science ®Google Scholar
• José R, Goebel BM, Friedmann EI, et al. 2003. Microbial diversity of cryptoendolithic communities from the McMurdo Dry Valleys, Antarctica. Appl Environ Microbiol. 69(7):3858–3867. doi:10.1128/AEM.69.7.3858-3867.2003.
   PubMed Web of Science ®Google Scholar
• Julien C, Massot M, Baddour-Hadjean R, et al. 2003. Raman spectra of birnessite manganese dioxides. Solid State Ionics. 159(3–4):345–356. doi:10.1016/S0167-2738(03)00035-3.
   Web of Science ®Google Scholar
• Kato S, Hashimoto K, Watanabe K. 2012. Microbial interspecies electron transfer via electric currents through conductive minerals. PNAS. 109:10042–10046. doi:10.1073/pnas.1117592109.
   PubMed Web of Science ®Google Scholar
• Koch C, Harnisch F. 2016. Is there a specific ecological niche for electroactive microorganisms? Chem Electro Chem. 3:1–15.
   Google Scholar
• Klüpfel L, Piepenbrock A, Kappler A, et al. 2014. Humic substances as fully regenerable electron acceptors in recurrently anoxic environments. Nat Geosci. 7(3):195–200. doi:10.1038/ngeo2084.
   Web of Science ®Google Scholar
• Kornienko N, Sakimoto KK, Herlihy DM, et al. 2016. Spectroscopic elucidation of energy transfer in hybrid inorganic–biological organisms for solar-to-chemical production. PNAS. 113(42):11750–11755. doi:10.1073/pnas.1610554113.
   PubMed Web of Science ®Google Scholar
• Koschinsky A, Halbach P. 1995. Sequential leaching of marine ferromanganese precipitates: genetic implications. Geochim Cosmochim Acta. 59(24):5113–5132. doi:10.1016/0016-7037(95)00358-4.
   Web of Science ®Google Scholar
• Laureanti J.A., Jones A.K. 2016. Photosynthetic Microbial Fuel Cells. In: Jeuken L. (eds) Biophotoelectrochemistry: From Bioelectrochemistry to Biophotovoltaics. Advances in Biochemical Engineering/Biotechnology, vol 158. Springer, Cham. p 159–175. https://doi.org/10.1007/10_2016_48
   Google Scholar
• Lian B, Yuan DX, Liu ZH. 2011. Effect of microbes on karstification in karst ecosystems. Chin Sci Bull. 56(35):3743–3747. doi:10.1007/s11434-011-4648-z.
   Google Scholar
• Li YB, Hou JJ, Xie DT. 2002. The recent development of research on karst ecology in Southwest China. Sci Geogr Sinica. 22(3):365–370.
   Google Scholar
• Lovley DR, Phillips EJP, Gorby YA, Landa ER. 1991. Microbial reduction of uranium. Nature. 350:413–416. doi:10.1038/350413a0.
   Web of Science ®Google Scholar
• Lovley DR. 2006. Bug juice: harvesting electricity with microorganisms. Nat Rev Microbiol. 4(7):497–508. doi:10.1038/nrmicro1442.
   PubMed Web of Science ®Google Scholar
• Lu A, Li Y, Jin S, et al. 2012. Growth of non-phototrophic microorganisms using solar energy through mineral photocatalysis. Nat Commun. 3:768. doi:10.1038/ncomms1768.
   PubMed Web of Science ®Google Scholar
• Ma J, Ni H, Su D, et al. 2016. Bioelectricity generation from pig farm wastewater in microbial fuel cell using carbon brush as electrode. Int J Hydrogen Energ. 41(36):16191–16195. doi:10.1016/j.ijhydene.2016.05.255.
   Web of Science ®Google Scholar
• Manheim FT, Lane-Bostwick CM. 1988. Cobalt in ferromanganese crusts as a monitor of hydrothermal discharge on the Pacific sea floor. Nature. 335:59–62. doi:10.1038/335059a0.
   Web of Science ®Google Scholar
• Myers CR, Nealson KH. 1988. Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor. Science. 240:1319–1321. doi:10.1126/science.240.4857.1319.
   PubMed Web of Science ®Google Scholar
• Nealson K, Berelson W. 2003. Layered microbial communities and the search for life in the universe. Geomicrobiol J. 20:451–462. doi:10.1080/713851133.
   Web of Science ®Google Scholar
• Ng DHP, Kumar A, Cao B. 2016. Microorganisms meet solid minerals: interactions and biotechnological applications. Appl Microbiol Biot. 100(16):6935–6946. doi:10.1007/s00253-016-7678-2.
   PubMed Web of Science ®Google Scholar
• Norris TB, Castenholz RW. 2006. Endolithic photosynthetic communities within ancient and recent travertine deposits in Yellowstone National Park. FEMS Microbiol Ecol. 57(3):470–483. doi:10.1111/j.1574-6941.2006.00134.x.
   PubMed Web of Science ®Google Scholar
• Ohko Y. 1997. Kinetics of photocatalytic reactions under extremely low-intensity UV illumination on titanium dioxide thin films. J Phys Chem A. 101(43):8057–8062. doi:10.1021/jp972002k.
   Web of Science ®Google Scholar
• Parchert KJ, Spilde MN, Porras-Alfaro A, et al. 2012. Fungal communities associated with rock varnish in Dark Canyon, New Mexico: casual inhabitants or essential partners? Geomicrobiol J. 29(8):752–766. doi:10.1080/01490451.2011.619636.
   Web of Science ®Google Scholar
• Perin MS, Fried VA, Slaughter CA, et al. 1988. The structure of cytochrome b561, a secretory vesicle-specific electron transport protein. EMBO J. 7(9):2697.
   PubMed Web of Science ®Google Scholar
• Perry RS, Kolb VM. 2003. Biological and organic constituents of desert varnish: review and new hypotheses. In: Instruments, Methods, and Missions for Astrobiology, Vol. VII. Hoover R and Rozanov A editors. San Diego, USA: Planetary Science Institute, pp 202–217.
   Google Scholar
• Pisciotta JM, Zaybak Z, Call DF, et al. 2012. Enrichment of microbial electrolysis cell biocathodes from sediment microbial fuel cell bioanodes. Appl Environ Microbiol. 78(15):5212–5219. doi:10.1128/AEM.00480-12.
   PubMed Web of Science ®Google Scholar
• Ramasamy RP. 2016. Photosynthetic electrochemical cells: U.S. Patent Application. 15:257.
   Google Scholar
• Ringelberg DB, Foley KL, Reynolds CM. 2011. Electrogenic capacity and community composition of anodic biofilms in soil-based bioelectrochemical systems. Appl Microbiol Biot 90(5):1805–1815. doi:10.1007/s00253-011-3264-9.
   PubMed Web of Science ®Google Scholar
• Sakai N, Ebina Y, Takada K, et al. 2005. Photocurrent generation from semiconducting manganese oxide nanosheets in response to visible light. J Phys Chem B. 109(19):9651–9655. doi:10.1021/jp0500485.
   PubMed Web of Science ®Google Scholar
• Sakimoto KK, Wong AB, Yang P. 2016. Self-photosensitization of nonphotosynthetic bacteria for solar-to-chemical production. Science. 351(6268):74–77. doi:10.1126/science.aad3317.
   PubMed Web of Science ®Google Scholar
• Sasaki D, Sasaki K, Tsuge Y, et al. 2016. Comparative metabolic state of microflora on the surface of the anode electrode in a microbial fuel cell operated at different pH conditions. AMB Exp. 6(1):125. doi:10.1186/s13568-016-0299-4.
   PubMedGoogle Scholar
• Schneider D, Reimer A, Hahlbrock A, et al., 2015. Metagenomic and metatranscriptomic analyses of bacterial communities derived from a calcifying karst water creek biofilm and tufa. Geomicrobiol J. 32: 3–4, 316–331. doi:10.1080/01490451.2014.907376.
   Web of Science ®Google Scholar
• Shevela D, Nöring B, Eckert H J, et al. 2006. Characterization of the water oxidizing complex of photosystem II of the Chl d-containing cyanobacterium Acaryochloris marina via its reactivity towards endogenous electron donors and acceptors. Phys Chem Chem Phys 8(29):3460–3466. doi:10.1039/B604389E.
   PubMed Web of Science ®Google Scholar
• Shi L, Dong H, Reguera G, et al. 2016. Extracellular electron transfer mechanisms between microorganisms and minerals. Nat Rev Microbiol 14:651–662. doi:10.1038/nrmicro.2016.93.
   PubMed Web of Science ®Google Scholar
• Sigler WV, Bachofen R, Zeyer J. 2003. Molecular characterization of endolithic cyanobacteria inhabiting exposed dolomite in central Switzerland. Environ Microbiol. 5(7):618–627. doi:10.1046/j.1462-2920.2003.00453.x.
   PubMed Web of Science ®Google Scholar
• Sleutels THJA, Ter Heijne A, Buisman CJN, et al. 2012. Bioelectrochemical systems: an outlook for practical applications. ChemSusChem. 5(6):1012–1019. doi:10.1002/cssc.201100732.
   PubMed Web of Science ®Google Scholar
• Solibacter Shi L, Tien M, Fredrickson JK, et al. 2015. Microbial Redox Proteins and Protein Complexes for Extracellular Respiration. Redox. Proteins in Supercomplexes and Signalosomes. Boca Raton: CRC press. p187–216.
   Google Scholar
• Shashkov A S, Streshinskaya G M, Kozlova Y I, et al. 2012. Teichulosonic acid, an anionic polymer of a new class from the cell wall of Actinoplanes utahensis VKM Ac-674 T. Biochemistry (Moscow), 77(5): 511–517.
   Google Scholar
• Sukkasem C, Xu S, Park S, et al. 2008. Effect of nitrate on the performance of single chamber air cathode microbial fuel cells. Water Res. 42(19):4743–4750. doi:10.1016/j.watres.2008.08.029.
   PubMed Web of Science ®Google Scholar
• Summers ZM, Fogarty HE, Leang C, Franks AE, Malvankar NS, Lovley DR. 2010. Direct exchange of electrons within aggregates of an evolved syntrophic coculture of anaerobic bacteria. Science. 330:1413–1415. doi:10.1126/science.1196526.
   PubMed Web of Science ®Google Scholar
• Sweeting MM. 1995. Karst in China. Physical Environment Series. Vol. 15, Berlin:Springer, pp 120–136. doi:10.1007/978-3-642-79520-6_6.
   Google Scholar
• Tang W, Xia J, Zeng X, et al. 2014. Biological characteristics and oxidation mechanism of a new manganese-oxidizing bacteria FM-2. Bio-med Mater Eng. 24(1):703–709.
   PubMed Web of Science ®Google Scholar
• Tang Y, Lian B, Dong H, et al. 2012. Endolithic bacterial communities in dolomite and limestone rocks from the Nanjiang Canyon in Guizhou karst area (China). Geomicrobiol J. 29(3):213–225. doi:10.1080/01490451.2011.558560.
   Web of Science ®Google Scholar
• Van Thielen N, Garbary DJ. 2000. Life in the rocks—endolithic algae. In: Seckbach J editor. Journey to Diverse Microbial Worlds, Adaptation to Exotic Environments. Dordrecht: Kluwer, pp 245–253.
   Google Scholar
• Walker JJ, Pace NR. 2007. Phylogenetic composition of Rocky Mountain endolithic microbial ecosystems. Appl Environ Microbiol. 73(11):3497–3504. doi:10.1128/AEM.02656-06.
   PubMed Web of Science ®Google Scholar
• Wall JD, Krumholz LR. 2006. Uranium reduction. Annu Rev Microbiol. 60:149–166. doi:10.1146/annurev.micro.59.030804.121357.
   PubMed Web of Science ®Google Scholar
• Whitman WB, Coleman DC, Wiebe WJ. 1998. Prokaryotes: the unseen majority. PNAS. 95(12):6578–6583. doi:10.1073/pnas.95.12.6578.
   PubMed Web of Science ®Google Scholar
• Zhang J, Yang G Q, Zhou S, et al. 2013. Fontibacter ferrireducens sp. nov., an Fe (III)-reducing bacterium isolated from a microbial fuel cell. Int J Syst Evol Micro. 63(3):925–929. doi:10.1099/ijs.0.040998-0.
   PubMedGoogle Scholar
• Zhu H, He X, Wang K, et al. 2012. Interactions of vegetation succession, soil bio-chemical properties and microbial communities in a Karst ecosystem. Eur J Soil Biol. 51:1–7. doi:10.1016/j.ejsobi.2012.03.003.
   Web of Science ®Google Scholar