Determination of Bacterioplankton Abundance, Production and Carbon Budget in the Northwest Weddell Sea

References

• Aracena C, Gonzalez HE, Garces-Vargas J, Lange CB, Pantoja S, Munoz F, Teca E, Tejos E. 2018. Influence of summer conditions on surface water properties and phytoplankton productivity in embayments of the South Shetland Islands. Polar Biol. 41:2135–2155.
   Web of Science ®Google Scholar
• Arrieta JM, Weinbauer MG, Lute C, Herndl GJ. 2004. Response of bacterioplankton to iron fertilization in the Southern Ocean. Limnol Oceanogr. 49:799–808.
   Web of Science ®Google Scholar
• Azam F. 1998. Microbial control of oceanic carbon flux: the plot thickens. Science. 280:694–696.
   Web of Science ®Google Scholar
• Bathmann UV, Scharek R, Klaas C, Dubischar CD, Smetacek V. 1997. Spring development of phytoplankton biomass and composition in major water masses of the Atlantic sector of the Southern Ocean. Deep Sea Res Part II. 44:51–67.
   Web of Science ®Google Scholar
• Beaugrand G, Edwards M, Raybaud V, Goberville E, Kirby RR. 2015. Future vulnerability of marine biodiversity compared with contemporary and past changes. Nat Clim Change. 5:695–701.
   Web of Science ®Google Scholar
• Beaulieu C, Henson SA, Sarmiento JL, Dunne JP. 2012. Factors challenging our ability to detect long-term trends in ocean chlorophyll. Biogeosciences Discuss. 9:16419–16456.
   Google Scholar
• Bird DF, Karl DM. 1999. Uncoupling of bacteria and phytoplankton during the austral spring bloom in Gerlache Strait, Antarctic Peninsula. Aquat Microb Ecol. 19:13–27.
   Web of Science ®Google Scholar
• Boyd PW, Cornwall CE, Davison A, Doney SC, Fourquez M, Hurd CL, Lima ID, McMinn A. 2016. Biological responses to environmental heterogeneity under future ocean conditions. Global Change Biol. 22:2633–2650.
   PubMed Web of Science ®Google Scholar
• Boyd PW, Rynearson TA, Armstrong EA, Fu F, Hayashi K, Hu Z, Hutchins DA, Kudela RM, Litchman E, Mulholland MR. 2013. Marine phytoplankton temperature versus growth responses from polar to tropical waters–outcome of a scientific community-wide study. PLoS One. 8:e63091.
   PubMed Web of Science ®Google Scholar
• Boyd PW, Watson AJ, Law CS, Abraham ER, Trull T, Murdoch R, Bakker DC, Bowie AR, Buesseler KO, Chang H. 2000. A mesoscale phytoplankton bloom in the polar Southern Ocean stimulated by iron fertilization. Nature. 407:695–702.
   PubMed Web of Science ®Google Scholar
• Brown SL, Landry MR. 2001. Microbial community structure and biomass in surface waters during a Polar Front summer bloom along 170°W. Deep Sea Res Part II. 48:4039–4058.
   Web of Science ®Google Scholar
• Bukin YS, Bondarenko NA, Rusanov II, Pimenov NV, Bukin SV, Pogodaeva TV, Chernitsyna SM, Shubenkova OV, Ivanov VG, Zakharenko AS, et al. 2020. Interconnection of bacterial and phytoplanktonic communities with hydrochemical parameters from ice and under-ice water in coastal zone of Lake Baikal. Sci Rep-Uk. 10:11087.
   PubMed Web of Science ®Google Scholar
• Cavicchioli R. 2015. Microbial ecology of Antarctic aquatic systems. Nat Rev Microbiol. 13:691–706.
   PubMed Web of Science ®Google Scholar
• Cook CP, Flierdt TVD, Williams T, Hemming SR, Iwai M, Kobayashi M, Jimenez-Espejo FJ, Escutia C, González JJ, Khim BK. 2013. Dynamic behaviour of the East Antarctic ice sheet during Pliocene warmth. Nat Geosci. 6:1–5.
   Web of Science ®Google Scholar
• Delille D, Gleizon F, Delille B. 2007. Spatial and temporal variation of bacterioplankton in a sub-Antarctic coastal area (Kerguelen Archipelago). J Mar Syst. 68:366–380.
   Web of Science ®Google Scholar
• Detoni AMS, Souza MSD, Garcia CAE, Tavano VM, Mata MM. 2015. Environmental conditions during phytoplankton blooms in the vicinity of James Ross Island, east of the Antarctic Peninsula. Polar Biol. 38:1111–1127.
   Web of Science ®Google Scholar
• Dorschel B, Gutt J, Huhn O, Bracher A, Huntemann M, Huneke W, Gebhardt C, Schröder M, Herr H. 2015. Environmental information for a marine ecosystem research approach for the northern Antarctic Peninsula (RV Polarstern expedition PS81, ANT-XXIX/3). Polar Biol. 39:1–23.
   Web of Science ®Google Scholar
• Duarte CM, Agustí S, Vaqué D, Agawin NSR, Felipe J, Casamayor EO, Gasol JM. 2005. Experimental test of bacteria-phytoplankton coupling in the Southern Ocean. Limnol Oceanogr. 50:1844–1854.
   Web of Science ®Google Scholar
• Ducklow HW. 1992. Factors regulating bottom-up control of bacterial biomass in open ocean plankton communities. Arch Hydrobiol Beih Ergebn Limnol. 37:207–217.
   Google Scholar
• Ducklow H, Carlson C, Church M, Kirchman D, Smith D, Steward G. 2001. The seasonal development of the bacterioplankton bloom in the Ross Sea, Antarctica, 1994–1997. Deep Sea Res Part II. 48:4199–4221.
   Web of Science ®Google Scholar
• Dutkiewicz S, Scott JR, Follows MJ. 2013. Winners and losers: ecological and biogeochemical changes in a warming ocean. Global Biogeochem Cycles. 27:463–477.
   Web of Science ®Google Scholar
• Fuentes S, Arroyo JI, Rodriguez-Marconi S, Masotti I, Alarcon-Schumacher T, Polz MF, Trefault N, De la Iglesia R, Diez B. 2019. Summer phyto- and bacterioplankton communities during low and high productivity scenarios in the Western Antarctic Peninsula. Polar Biol. 42:159–169.
   Web of Science ®Google Scholar
• Fujiwara A, Hirawake T, Suzuki K, Imai I, Saitoh SI. 2014. Timing of sea ice retreat can alter phytoplankton community structure in the western Arctic Ocean. Biogeosciences. 11:1705–1716.
   Web of Science ®Google Scholar
• Gao Y, He JF, Chen M, Lin L, Zhang F. 2017. Factors dominating bacterioplankton abundance and production in the Nordic seas and the Chukchi Sea in summer 2012. Acta Oceanol Sin. 36:153–162. English.
   Web of Science ®Google Scholar
• Garibotti IA, Vernet M, Smith RC, Ferrario ME. 2005. Interannual variability in the distribution of the phytoplankton standing stock across the seasonal sea-ice zone west of the Antarctic Peninsula. J Plankton Res. 27:825–843.
   Web of Science ®Google Scholar
• Garneau MÈ, Roy S, Lovejoy C, Gratton Y, Vincent WF. 2008. Seasonal dynamics of bacterial biomass and production in a coastal arctic ecosystem: Franklin Bay, western Canadian Arctic. J Geophys Res Oceans. 113:827–830.
   Web of Science ®Google Scholar
• Gasol J, Zweifel U, Peters F, Fuhrman J, Hagström A. 1999. Significance of size and nucleic acid content Heterogeneity as measured by flow cytometry in natural planktonic bacteria. Appl Environ Microbiol. 65:4475–4483.
   PubMed Web of Science ®Google Scholar
• Giorgio PAd, Bird DF, Prairie YT, Planas D. 1996. Flow cytometric determination of bacterial abundance in lake plankton with the green nucleic acid stain SYTO 13. Limnol Oceanogr. 41:783–789.
   Web of Science ®Google Scholar
• Gonzalez JM, Sherr EB, Sherr BF. 1990. Size-selective grazing on bacteria by natural assemblages of estuarine flagellates and ciliates. Appl Environ Microbiol. 56:583–589.
   PubMed Web of Science ®Google Scholar
• Gordon AL, Mensch M, Dong Z, Jr WMS, Bettencourt J. 2000. Deep and bottom water of the Bransfield Strait eastern and central basins. J Geophys Res. 105:11337–11346.
   Web of Science ®Google Scholar
• Granéli W, Carlsson P, Bertilsson S. 2004. Bacterial abundance, production and organic carbon limitation in the Southern Ocean (39–62°S, 4–14°E) during the austral summer 1997/1998. Deep Sea Res Part II. 51:2569–2582.
   Web of Science ®Google Scholar
• Grossmann S. 1994. Bacterial activity in sea ice and open water of the Weddell Sea, Antarctica a microautoradiographic study. Microb Ecol 28:1–18.
   PubMed Web of Science ®Google Scholar
• Guixa-Boixereu N, Vaqué D, Gasol JM, Sánchez-Cámara J, Pedrós-Alió C. 2002. Viral distribution and activity in Antarctic waters. Deep Sea Res Part II. 49:827–845.
   Web of Science ®Google Scholar
• Gyldenfeldt AB, Fahrbach E, Garcia MA, Schroder M. 2002. Flow variability at the tip of the Antarctic Peninsula. Deep Sea Res Part II. 49:4743–4766.
   Web of Science ®Google Scholar
• Haberman KL, Ross RM, Quetin LB. 2003. Diet of the Antarctic krill (Euphausia superba Dana): II. Selective grazing in mixed phytoplankton assemblages. J Exp Mar Biol Ecol. 283:97–113.
   Web of Science ®Google Scholar
• Hopkinson CS, Smith EM. 2004. Estuarine respiration: an overview of benthic, pelagic, and whole system respiration. In: Respiration in Aquatic Ecosystems. New York, NY: Academic Press, p122–147.
   Google Scholar
• Hoppe HG, Breithaupt P, Walther KK. Regine 2008. Climate warming in winter affects the coupling between phytoplankton and bacteria during the spring bloom: a mesocosm study. Aquat Microb Ecol. 54:105–115.
   Web of Science ®Google Scholar
• Hoppe H-G, Gocke K, Koppe R, Begler C. 2002. Bacterial growth and primary production along a north-south transect of the Atlantic Ocean. Nature. 416:168–171.
   PubMed Web of Science ®Google Scholar
• Huertas IE, Rouco M, Lópezrodas V, Costas E. 2011. Warming will affect phytoplankton differently: evidence through a mechanistic approach. Proc Royal Soc B Biol Sci. 278:3534–3543.
   PubMed Web of Science ®Google Scholar
• Huneke WGC, Huhn O, Schröeder M. 2016. Water masses in the Bransfield Strait and adjacent seas, austral summer 2013. Polar Biol. 39:789–798.
   Web of Science ®Google Scholar
• Hyun J-H, Kim S-H, Yang EJ, Choi A, Lee SH. 2016. Biomass, production, and control of heterotrophic bacterioplankton during a late phytoplankton bloom in the Amundsen Sea Polynya, Antarctica. Deep Sea Res Part II. 123:102–112.
   Web of Science ®Google Scholar
• Irwin AJ, Finkel ZV, Müllerkarger FE, Troccoli GL. 2015. Phytoplankton adapt to changing ocean environments. PNAS. 112:5762–5766.
   PubMed Web of Science ®Google Scholar
• Kim H, Doney SC, Iannuzzi RA, Meredith MP, Martinson DG, Ducklow HW. 2016. Climate forcing for dynamics of dissolved inorganic nutrients at Palmer Station, Antarctica: an interdecadal (1993–2013) analysis: climate forcing of nutrient dynamics. J Geophys Res Biogeosci. 121:2396–2389.
   Web of Science ®Google Scholar
• Kirchman DL, Hill V, Cottrell MT, Gradinger R, Malmstrom RR, Parker A. 2009a. Standing stocks, production, and respiration of phytoplankton and heterotrophic bacteria in the western Arctic Ocean. Deep Sea Res Part II. 56:1237–1248.
   Web of Science ®Google Scholar
• Knap AH, Michaels AF, Close AR, Ducklow HW, Dickson AG. 1996. Protocols for the Joint Global Ocean Flux Study (JGOFS) Core Measurements. JGOFS Report No. 19. Reprint of the IOC Manuals and Guides No. 29, 1994. Paris: UNESCO.
   Google Scholar
• Kottmeier ST, Sullivan C. 1990. Bacterial biomass and production in pack ice of Antarctic marginal ice edge zones. Deep Sea Res Part A. 37:1311–1330.
   Web of Science ®Google Scholar
• Kuparinen J, Bjørnsen PK. 1992. Spatial distribution of bacterioplankton production across the Weddell-Scotia Confluence during early austral summer 1988–1989. Polar Biol. 12:197–204.
   Web of Science ®Google Scholar
• Lannuzel D, Schoemann V, Dumont I, Content M, Jong J, Tison JL, Delille B, Becquevort S. 2013. Effect of melting Antarctic sea ice on the fate of microbial communities studied in microcosms. Polar Biol. 36:1483–1497.
   Web of Science ®Google Scholar
• Lebaron P, Parthuisot N, Catala P. 1998. Comparison of blue nucleic acid dyes for flow cytometric enumeration of bacteria in aquatic systems. Appl Environ Microbiol. 64:1725–1730.
   PubMed Web of Science ®Google Scholar
• Levitus S, Antonov JI, Boyer TP, Stephens C. 2000. Warming of the world ocean. Braz J Phys. 37:92–94.
   Google Scholar
• Locarnini RA, Whitworth T, Nowlin WD. 1993. The importance of the Scotia Sea on the outflow of Weddell Sea deep water. J Mar Res. 51:135–153.
   Web of Science ®Google Scholar
• Lochte K, Bjørnsen PK, Giesenhagen H, Weber A. 1997. Bacterial standing stock and production and their relation to phytoplankton in the Southern Ocean. Deep Sea Res Part II. 44:321–340.
   Web of Science ®Google Scholar
• Madan NJ, Marshall WA, Laybourn-Parry J. 2005. Virus and microbial loop dynamics over an annual cycle in three contrasting Antarctic lakes. Freshw Biol. 50:1291–1300.
   Web of Science ®Google Scholar
• Maier-Reimer E, Mikolajewicz U, Winguth A. 1996. Future ocean uptake of CO2: interaction between ocean circulation and biology. Clim Dyn. 12:711–722.
   Web of Science ®Google Scholar
• Manabe S, Stouffer RJ. 1993. Century-scale effects of increased atmospheric CO2 on the ocean–atmosphere system. Nature. 364:215–218.
   Web of Science ®Google Scholar
• Marie D, Partensky F, Jacquet S, Vaulot D. 1997. Enumeration and cell cycle analysis of natural populations of marine picoplankton by flow cytometry using the nucleic acid stain SYBR green I. Appl Environ Microbiol. 63:186–193.
   PubMed Web of Science ®Google Scholar
• Martin JH, Michael G, Fitzwater SE. 1991. The case for iron. Limnol Oceanogr. 36:1793–1802.
   Web of Science ®Google Scholar
• Matano RP, Gordon AL, Muench RD, Palma ED. 2002. A numerical study of the circulation in the northwestern Weddell Sea. Deep Sea Res Part II. 49:4827–4841.
   Web of Science ®Google Scholar
• Mendes CRB, Souza MSD, Garcia VMT, Leal MC, Brotas V, Garcia CAE. 2012. Dynamics of phytoplankton communities during late summer around the tip of the Antarctic Peninsula. Deep Sea Res Part II. 65:1–14.
   Web of Science ®Google Scholar
• Morán XAG, Gasol JM, Pedrós-Alió C, Estrada M. 2001. Dissolved and particulate primary production and bacterial production in offshore Antarctic waters during austral summer: coupled or uncoupled? Mar Ecol Prog Ser. 222:25–39.
   Web of Science ®Google Scholar
• Mutshinda C, Troccoli L, Finkel ZV, Muller-Karger FE, Irwin A. 2012. Environmental control of the dominant phytoplankton in the Cariaco basin: a hierarchical Bayesian approach. Mar Biol Res. 9:247–261.
   Web of Science ®Google Scholar
• Norrman B, Zwelfel UL, Hopkinson CS, Brian F. 1995. Production and utilization of dissolved organic carbon during an experimental diatom bloom. Limnol Oceanogr. 40:898–907.
   Web of Science ®Google Scholar
• Orsi AH, Nowlin WD, Whitworth T. 1993. On the circulation and stratification of the Weddell Gyre. Deep Sea Res Part I. 40:169–203.
   Web of Science ®Google Scholar
• Ortega-Retuerta E, Reche I, Pulido-Villena E, Agustí S, Duarte CM. 2008. Exploring the relationship between active bacterioplankton and phytoplankton in the Southern Ocean. Aquat Microb Ecol. 52:99–106.
   Web of Science ®Google Scholar
• Park MG, Yang SR, Kang SH, Chung KH, Shim JH. 1999. Phytoplankton biomass and primary production in the marginal ice zone of the northwestern Weddell Sea during austral summer. Polar Biol. 21:251–261.
   Web of Science ®Google Scholar
• Parsons TR, Maita YR, Lalli CM. 1984. A Manual of Chemical and Biological Methods of Seawater Analysis. Oxford: Pergamon Press.
   Google Scholar
• Patterson SL, Sievers HA. 1980. The Weddell-Scotia Confluence. J Phys Oceanogr. 10:1584–1610.
   Web of Science ®Google Scholar
• Pomeroy LR, Wiebe Wj Pomeroy LR. Wiebe Wj 2001. Temperature and substrates as interactive limiting factors for marine heterotrophic bacteria. Aquat Microb Ecol. 23:187–204.
   Web of Science ®Google Scholar
• Pugnetti A, Negro PD, Giani M, Acri F, Aubry FB, Bianchi F, Berto D, Valeri A. 2010. Phytoplankton–bacterioplankton interactions and carbon fluxes through microbial communities in a microtidal lagoon. Fems Microbiol Ecol. 72:153–164.
   PubMed Web of Science ®Google Scholar
• Revilla M, Ansotegui A, Iriarte A, Madariaca I, Orive E, Sarobe A, Trigueros JM. 2002. Microplankton metabolism along a trophic gradient in a shallow-temperate estuary. Estuaries Coasts. 25:6–18.
   Web of Science ®Google Scholar
• Rignot E, Velicogna I, Van dB MR, Monaghan A, Lenaerts JTM. 2011. Acceleration of the contribution of the Greenland and Antarctic ice sheets to sea level rise. Geophys Res Lett. 38:132–140.
   Web of Science ®Google Scholar
• Sarmiento JL, Hughes TMC, Stouffer RJ, Manabe S. 1998. Simulated response of the ocean carbon cycle to anthropogenic climate warming. Nature. 393:245–249.
   Web of Science ®Google Scholar
• Sarmiento JL, Quere CL. 1996. Oceanic carbon dioxide uptake in a model of century-scale global warming. Science. 274:1346–1350.
   PubMed Web of Science ®Google Scholar
• Sherr E, Sherr B. 1988. Role of microbes in pelagic food webs: a revised concept. Limnol Oceanogr. 33:1225–1227.
   Web of Science ®Google Scholar
• Smith KL, Sherman AD, Shaw TJ, Murray AE, Vernet M, Cefarelli AO. 2011. Carbon export associated with free-drifting icebergs in the Southern Ocean. Deep Sea Res Part II. 58:1485–1496.
   Web of Science ®Google Scholar
• Solic M, Krstulovic N, Vilibic I, Bojanic N, Kuspipilic G, Sestanovic S, Santic D, Ordulj M. 2009. Variability in the bottom-up and top-down controls of bacteria on trophic and temporal scales in the middle Adriatic Sea. Aquat Microb Ecol. 58:15–29.
   Web of Science ®Google Scholar
• Thomas MK, Kremer CT, Klausmeier AC, Litchman E. 2012. A global pattern of thermal adaptation in marine phytoplankton. Science. 338:1085–1088.
   PubMed Web of Science ®Google Scholar
• Ugalde SC, Westwood KJ, Enden RVD, Mcminn A, Meiners KM. 2016. Characteristics and primary productivity of East Antarctic pack ice during the winter-spring transition. Deep Sea Res Part II. 131:123–139.
   Web of Science ®Google Scholar
• Underwood GJC, Michel C, Meisterhans G, Niemi A, Belzile C, Witt M, Dumbrell AJ, Koch BP. 2019. Organic matter from Arctic sea-ice loss alters bacterial community structure and function. Nat Clim Change. 9:170.
   Web of Science ®Google Scholar
• Vaqué D, Calderón-Paz JI, Guixa-Boixereu N, Pedrós-Alió C. 2002. Spatial distribution of microbial biomass and activity (bacterivory and bacterial production) in the northern Weddell Sea during the austral summer (January 1994). Aquat Microb Ecol. 29:107–121.
   Web of Science ®Google Scholar
• Vaqué D, Guadayol Ò, Peters F, Felipe J, Malits A, Pedrós-Alió C. 2009. Differential response of grazing and bacterial heterotrophic production to experimental warming in Antarctic waters. Aquat Microb Ecol. 54:101–112.
   Web of Science ®Google Scholar
• Walther G-R, Post E, Convey P, Menzel A, Parmesank C, Beebee TJC, Fromentin J-M, Hoegh-Guldberg O, Bairlein F. 2002. Ecological responses to recent climate change. Nature. 416:389–395.
   PubMed Web of Science ®Google Scholar
• Wilson B, Muller O, Nordmann EL, Seuthe L, Bratbak G, Ovreas L. 2017. Changes in marine prokaryote composition with season and depth over an Arctic Polar year. Front Mar Sci. 4:95.
   Web of Science ®Google Scholar
• Zdanowski MK. 1998. Factors regulating bacterial abundance in Antarctic coastal and shelf waters. Pol Polar Res. 19:169–186.
   Google Scholar