Limited Bioweathering by Cyanobacteria in Cold, Nutrient-Limited Conditions: Implications for Microbe-Mineral Interactions and Aquatic Chemistry in Cold Environments

References

• Aitchison J. 1982. The statistical analysis of compositional data. JR Statist Soc. 44(2):139–160.
   Google Scholar
• Aitchison J, Greenacre M. 2002. Biplots of compositional data. J Royal Statistical Soc C. 51(4):375–392.
   Web of Science ®Google Scholar
• Andrews JT, Eberl DD. 2007. Quantitative mineralogy of surface sediments on the iceland shelf, and application to down-core studies of holocene ice-rafted sediments. J Sediment Res. 77(6):469–479.
   Web of Science ®Google Scholar
• Anesio AM, Laybourn-Parry J. 2012. Glaciers and ice sheets as a biome. Trends Ecol Evol. 27(4):219–225.
   PubMed Web of Science ®Google Scholar
• Archer SDJ, de los Ríos A, Lee KC, Niederberger TS, Cary SC, Coyne KJ, Douglas S, Lacap-Bugler DC, Pointing SB. 2017. Endolithic microbial diversity in sandstone and granite from the McMurdo Dry Valleys, Antarctica. Polar Biol. 40(5):997–1006.
   Web of Science ®Google Scholar
• Balks MR, Paetzold RONF, Kimble JM, Aislabie JM, Campbell IB. 2002. Effects of hydrocarbon spills on the temperature and moisture regimes of Cryosols in the Ross Sea region. Antartic Science. 14(4):319–326.
   Web of Science ®Google Scholar
• Brocks JJ, Jarrett AJM, Sirantoine E, Hallmann C, Hoshino Y, Liyanage T. 2017. The rise of algae in Cryogenian oceans and the emergence of animals. Nature. 548(7669):578–581.
   PubMed Web of Science ®Google Scholar
• Büdel B, Bendix J, Bicker FR, Allan Green TG. 2008. Dewfall as a water source frequently activates the endolithic cyanobacterial communities in the granites of taylor valley, antarctica1. J Phycol. 44(6):1415–1424.
   PubMed Web of Science ®Google Scholar
• Büdel B, Weber B, Kühl M, Pfanz H, Sültemeyer D, Wessels D. 2004. Reshaping of sandstone surfaces by cryptoendolithic cyanobacteria: bioalkalization causes chemical weathering in arid landscapes. Geobiology. 2(4):261–268.
   Web of Science ®Google Scholar
• Cary SC, McDonald IR, Barrett JE, Cowan DA. 2010. On the rocks: The microbiology of Antarctic Dry Valley soils. Nat Rev Microbiol. 8(2):129–138.
   PubMed Web of Science ®Google Scholar
• Cornet L, Bertrand AR, Hanikenne M, Javaux EJ, Wilmotte A, Baurain D. 2018. Metagenomic assembly of new (Sub)polar cyanobacteria and their associated microbiome from non-axenic cultures. Microb Genom. 4(9):e000212. doi: 10.1099/mgen.0.000212.
   PubMed Web of Science ®Google Scholar
• Costa OYA, Raaijmakers JM, Kuramae EE. 2018. Microbial extracellular polymeric substances: Ecological function and impact on soil aggregation. Front Microbiol. 9:1636. https://www.frontiersin.org/article/10.3389/fmicb.2018.01636.
   PubMed Web of Science ®Google Scholar
• Cowan DA, Khan N, Pointing SB, Cary SC. 2010. Diverse hypolithic refuge communities in the McMurdo Dry Valleys. Antartic Science. 22(6):714–720.
   Web of Science ®Google Scholar
• de los Ríos A, Grube M, Sancho LG, Ascaso C. 2007. Ultrastructural and genetic characteristics of endolithic cyanobacterial biofilms colonizing Antarctic granite rocks. FEMS Microbiol Ecol. 59(2):386–395.
   PubMed Web of Science ®Google Scholar
• de los Ríos A, Wierzchos J, Sancho LG, Ascaso C. 2003. Acid microenvironments in microbial biofilms of antarctic endolithic microecosystems. Environ Microbiol. 5(4):231–237.
   PubMed Web of Science ®Google Scholar
• Demirel-Floyd C, Soreghan GS, Madden MEE. 2022. Cyanobacterial weathering in warming periglacial sediments: Implications for nutrient cycling and potential biosignatures. Permafrost & Periglacial. 33(1):63–77.
   Web of Science ®Google Scholar
• Demirel-Floyd C, Soreghan GS, Webb NDS, Roche A, Joo YJ, Hall B, Levy JS, Elwood Madden AS, Elwood Madden ME. 2023. Investigating weathering signatures in terrestrial muds: Can climatic signatures be separated from provenance? GSA Bulletin. 136 (5-6): 2237–2255.
   Web of Science ®Google Scholar
• Dessert C, Dupré B, François LM, Schott J, Gaillardet J, Chakrapani G, Bajpai S. 2001. Erosion of Deccan Traps determined by river geochemistry: impact on the global climate and the 87Sr/86Sr ratio of seawater. Earth Planet Sci Lett. 188(3–4):459–474.
   Web of Science ®Google Scholar
• Dolgikh AV, Mergelov NS, Abramov AA, Lupachev AV, Goryachkin SV. 2015. Soils of Enderby Land. In: Bockheim JG, editor. The Soils of Antarctica, Cham: Springer International Publishing, p. 45–63.
   Google Scholar
• Doran PT, McKay CP, Clow GD, Dana GL, Fountain AG, Nylen T, Lyons WB. 2002. Valley floor climate observations from the McMurdo dry valleys, Antarctica, 1986–2000. J-Geophys-Res. 107(D24):ACL 13-1–ACL 13-12.
   Web of Science ®Google Scholar
• Doran PT, McKay CP, Fountain AG, Nylen T, McKnight DM, Jaros C, Barrett JE. 2008. Hydrologic response to extreme warm and cold summers in the McMurdo Dry Valleys, East Antarctica. Antarct Sci. 20(5):499–509.
   Web of Science ®Google Scholar
• Dove PM. 1999. The dissolution kinetics of quartz in aqueous mixed cation solutions. Geochim Cosmochim Acta. 63(22):3715–3727.
   Web of Science ®Google Scholar
• Dove PM, Elston SF. 1992. Dissolution kinetics of quartz in sodium chloride solutions: Analysis of existing data and a rate model for 25 °C. Geochim Cosmochim Acta. 56(12):4147–4156.
   Web of Science ®Google Scholar
• Dove PM, Nix CJ. 1997. The influence of the alkaline earth cations, magnesium, calcium, and barium on the dissolution kinetics of quartz. Geochim Cosmochim Acta. 61(16):3329–3340.
   Web of Science ®Google Scholar
• Dupraz C, Reid RP, Braissant O, Decho AW, Norman RS, Visscher PT. 2009. Processes of carbonate precipitation in modern microbial mats. Earth Sci Rev. 96(3):141–162.
   Web of Science ®Google Scholar
• Fairchild IJ, Kennedy MJ. 2007. Neoproterozoic glaciation in the Earth System. JGS. 164(5):895–921.
   Google Scholar
• Fernandez-Carazo R, Hodgson DA, Convey P, Wilmotte A. 2011. Low cyanobacterial diversity in biotopes of the Transantarctic Mountains and Shackleton Range (80-82°S), Antarctica. FEMS Microbiol Ecol. 77(3):503–517.
   PubMed Web of Science ®Google Scholar
• Filzmoser P, Hron K, Reimann C. 2009. Principal component analysis for compositional data with outliers. Environmetrics. 20(6):621–632.
   Web of Science ®Google Scholar
• Fiore MF, Moon DH, Tsai SM, Lee H, Trevors JT. 2000. Miniprep DNA isolation from unicellular and filamentous cyanobacteria. J Microbiol Methods. 39(2):159–169.
   PubMed Web of Science ®Google Scholar
• Fischer ER, Hansen BT, Nair V, Hoyt FH, Dorward DW. 2012. Scanning Electron Microscopy. Curr Protoc Microbiol. 2(1):Unit 2B.2.
   Google Scholar
• Fountain AG, Lyons WB, Burkins MB, Dana GL, Doran PT, Lewis KJ, McKnight DM, Moorhead DL, Parsons AN, Priscu JC, et al. 1999. Physical controls on the Taylor Valley Ecosystem, Antarctica. BioScience. 49(12):961–971.
   Web of Science ®Google Scholar
• Gilichinsky DA, Wilson GS, Friedmann EI, McKay CP, Sletten RS, Rivkina EM, Vishnivetskaya TA, Erokhina LG, Ivanushkina NE, Kochkina GA, et al. 2007. Microbial populations in Antarctic permafrost: Biodiversity, stage, age, and implication for astrobiology. Astrobiology. 7(2):275–311.
   PubMed Web of Science ®Google Scholar
• Goldich SS. 1938. A study in rock-weathering. J Geology. 46(1):17–58.
   Google Scholar
• Hall BL, Denton GH. 2005. Surficial geology and geomorphology of eastern and central Wright Valley, Antarctica. Geomorphology. 64(1–2):25–65.
   Web of Science ®Google Scholar
• Hall BL, Denton GH, Lux DR, Bockheim JG. 1993. Late tertiary antarctic paleoclimate and ice-sheet dynamics inferred from surficial deposits in Wright Valley. Geografiska Annaler: Series A, Physical Geog Geografiska Annaler. 75(4):239–267.
   Google Scholar
• Hoffman PF, Kaufman AJ, Halverson GP, Schrag DP. 1998. A Neoproterozoic Snowball Earth. Science. 281(5381):1342–1346.
   PubMed Web of Science ®Google Scholar
• Hoffman PF, Schrag DP. 2002. The snowball Earth hypothesis: testing the limits of global change. Terra Nova. 14(3):129–155.
   Web of Science ®Google Scholar
• Howard-Williams C, Priscu JC, Vincent WF. 1989. Nitrogen dynamics in two Antarctic streams. Hydrobiologia. 172(1):51–61.
   Google Scholar
• Howard-Williams C, Vincent WF. 1989. Microbial communities in southern Victoria Land streams (Antarctica) I. Photosynthesis. Hydrobiologia. 172(1):27–38.
   Google Scholar
• Icenhower JP, Dove PM. 2000. The dissolution kinetics of amorphous silica into sodium chloride solutions: effects of temperature and ionic strength. Geochim Cosmochim Acta. 64(24):4193–4203.
   Web of Science ®Google Scholar
• Karr EA, Sattley WM, Jung DO, Madigan MT, Achenbach LA. 2003. Remarkable diversity of phototrophic purple bacteria in a permanently frozen Antarctic Lake. Appl Environ Microbiol. 69(8):4910–4914.
   PubMed Web of Science ®Google Scholar
• Kleinteich J, Wood SA, Küpper FC, Camacho A, Quesada A, Frickey T, Dietrich DR. 2012. Temperature-related changes in polar cyanobacterial mat diversity and toxin production. Nature Clim Change. 2(5):356–360.
   Web of Science ®Google Scholar
• Kyle JE, Schroeder PA, Wiegel J. 2007. Microbial silicification in sinters from two terrestrial hot springs in the Uzon Caldera, Kamchatka, Russia. Geomicrobiol J. 24(7–8):627–641.
   Web of Science ®Google Scholar
• Lyons WB, Dailey KR, Welch KA, Deuerling KM, Welch SA, McKnight DM. 2015. Antarctic streams as a potential source of iron for the Southern Ocean. Geology. 43(11):1003–1006.
   Web of Science ®Google Scholar
• Mancuso Nichols CA, Garon S, Bowman JP, Raguénès G, Guézennec J. 2004. Production of exopolysaccharides by Antarctic marine bacterial isolates. J Appl Microbiol. 96(5):1057–1066.
   PubMed Web of Science ®Google Scholar
• Margesin R, Miteva V. 2011. Diversity and ecology of psychrophilic microorganisms. Res Microbiol. 162(3):346–361. doi: 10.1016/j.resmic.2010.12.004.
   PubMed Web of Science ®Google Scholar
• Marra KR, Madden MEE, Soreghan GS, Hall BL. 2015. BET surface area distributions in polar stream sediments: Implications for silicate weathering in a cold-arid environment. Appl Geochem. 52:31–42.
   Web of Science ®Google Scholar
• Marra KR, Madden MEE, Soreghan GS, Hall BL. 2017. Chemical weathering trends in fine-grained ephemeral stream sediments of the McMurdo Dry Valleys, Antarctica. Geomorphology. 281:13–30.
   Web of Science ®Google Scholar
• Marra KR, Soreghan GS, Elwood Madden ME, Keiser LJ, Hall BL. 2014. Trends in grain size and BET surface area in cold–arid versus warm–semiarid fluvial systems. Geomorphology. 206:483–491.
   Web of Science ®Google Scholar
• Marx JG, Carpenter SD, Deming JW. 2009. Production of cryoprotectant extracellular polysaccharide substances (EPS) by the marine psychrophilic bacterium Colwellia psychrerythraea strain 34H under extreme conditionsThis article is one of a selection of papers in the Special Issue on Polar and Alpine. Can J Microbiol. 55(1):63–72.
   PubMed Web of Science ®Google Scholar
• McKnight DM, Niyogia E, Algera L, Conovitz E, Tate A. 1999. Dry Valley Streams in AntarcticaE: cosystems Waitingfor Water. 11.
   Google Scholar
• McKnight DM, Runkel RL, Tate CM, Duff JH, Moorhead DL. 2004. Inorganic N and P dynamics of Antarctic glacial meltwater streams as controlled by hyporheic exchange and benthic autotrophic communities. J N Am Benthological Soc. 23(2):171–188.
   Google Scholar
• Mergelov N, Mueller CW, Prater I, Shorkunov I, Dolgikh A, Zazovskaya E, Shishkov V, Krupskaya V, Abrosimov K, Cherkinsky A, et al. 2018. Alteration of rocks by endolithic organisms is one of the pathways for the beginning of soils on Earth. Sci Rep. 8(1):3367.
   PubMedGoogle Scholar
• Montross SN, Skidmore M, Tranter M, Kivimäki AL, Parkes RJ. 2013. A microbial driver of chemical weathering in glaciated systems. Geology. 41(2):215–218.
   Web of Science ®Google Scholar
• Navarre-Sitchler A, Brantley S. 2007. Basalt weathering across scales. Earth Planet Sci Lett. 261(1–2):321–334.
   Web of Science ®Google Scholar
• Nevot M, Deroncelé V, Montes MJ, Mercade E. 2008. Effect of incubation temperature on growth parameters of Pseudoalteromonas antarctica NF 3 and its production of extracellular polymeric substances. J Appl Microbiol. 105(1):255–263.
   PubMed Web of Science ®Google Scholar
• Ólafsson H, Furger M, Brümmer B. 2007. The weather and climate of Iceland. metz. 16(1):5–8.
   Web of Science ®Google Scholar
• Olsson-Francis K, Simpson AE, Wolff-Boenisch D, Cockell CS. 2012. The effect of rock composition on cyanobacterial weathering of crystalline basalt and rhyolite. Geobiology. 10(5):434–444.
   PubMed Web of Science ®Google Scholar
• Omelon CR. 2008. Endolithic microbial communities in polar desert habitats. Geomicrobiol J. 25(7–8):404–414.
   Web of Science ®Google Scholar
• Palarea-Albaladejo J, Martín-Fernández JA. 2013. Values below detection limit in compositional chemical data. Anal Chim Acta. 764:32–43.
   PubMed Web of Science ®Google Scholar
• Palarea-Albaladejo J, Martín-Fernández JA, Buccianti A. 2014. Compositional methods for estimating elemental concentrations below the limit of detection in practice using R. J Geochem Explor. 141:71–77.
   Web of Science ®Google Scholar
• Pandey KD, Shukla SP, Shukla PN, Giri DD, Singh JS, Singh P, Kashyap AK. 2004. Cyanobacteria in antarctica: ecology, physiology and cold adaptation. Cell Mol Biol (Noisy-le-Grand). 50(5):575–584.
   PubMed Web of Science ®Google Scholar
• Phillips-Lander CM, Elwood Madden AS, Hausrath EM, Elwood Madden ME. 2019. Aqueous alteration of pyroxene in sulfate, chloride, and perchlorate brines: Implications for post-Noachian aqueous alteration on Mars. Geochim Cosmochim Acta. 257:336–353.
   Web of Science ®Google Scholar
• Price PB. 2000. A habitat for psychrophiles in deep Antarctic ice. Proc Natl Acad Sci U S A. 97(3):1247–1251.
   PubMed Web of Science ®Google Scholar
• Ramette A. 2007. Multivariate analyses in microbial ecology. FEMS Microbiol Ecol. 62(2):142–160.
   PubMed Web of Science ®Google Scholar
• Rasmussen C, Brantley S, Richter D deB, Blum A, Dixon J, White AF. 2011. Strong climate and tectonic control on plagioclase weathering in granitic terrain. Earth Planet Sci Lett. 301(3-4):521–530.
   Web of Science ®Google Scholar
• Rimstidt JD. 2013. Geochemical Rate Models: An Introduction to Geochemical Kinetics. Cambridge: Cambridge University Press.
   Google Scholar
• Shcolnick S, Keren N. 2006. Metal homeostasis in cyanobacteria and chloroplasts. Balancing benefits and risks to the photosynthetic apparatus. Plant Physiol. 141(3):805–810. doi: 10.1104/pp.106.079251.
   PubMed Web of Science ®Google Scholar
• Shizuya A, Kaiho K, Tong J. 2021. Marine biomass changes during and after the Neoproterozoic Marinoan global glaciation. Global Planet Change. 205:103610.
   Web of Science ®Google Scholar
• Sigmundsson F, Hreinsdóttir S, Hooper A, Arnadóttir T, Pedersen R, Roberts MJ, Oskarsson N, Auriac A, Decriem J, Einarsson P, et al. 2010. Intrusion triggering of the 2010 Eyjafjallajökull explosive eruption. Nature. 468(7322):426–430.
   PubMed Web of Science ®Google Scholar
• Smith HJ, Foster RA, McKnight DM, Lisle JT, Littmann S, Kuypers MMM, Foreman CM. 2017. Microbial formation of labile organic carbon in Antarctic glacial environments. Nature Geosci. 10(5):356–359.
   Web of Science ®Google Scholar
• Stumpf AR, Elwood Madden ME, Soreghan GS, Hall BL, Keiser LJ, Marra KR. 2012. Glacier meltwater stream chemistry in Wright and Taylor Valleys, Antarctica: Significant roles of drift, dust and biological processes in chemical weathering in a polar climate. Chem Geol. 322–323:79–90.
   Web of Science ®Google Scholar
• Sun HJ, Friedmann EI. 1999. Growth on geological time scales in the Antarctic cryptoendolithic microbial community. Geomicrobiology J. 16(2):193–202.
   Web of Science ®Google Scholar
• de la Torre JR, Goebel BM, Friedmann EI, Pace NR. 2003. Microbial diversity of cryptoendolithic communities from the McMurdo Dry Valleys, Antarctica. Appl Environ Microbiol. 69(7):3858–3867.
   PubMed Web of Science ®Google Scholar
• Van Horn DJ, Wolf CR, Colman DR, Jiang X, Kohler TJ, McKnight DM, Stanish LF, Yazzie T, Takacs-Vesbach CD. 2016. Patterns of bacterial biodiversity in the glacial meltwater streams of the McMurdo Dry Valleys, Antarctica. FEMS Microbiol Ecol. 92(10):fiw148.
   PubMed Web of Science ®Google Scholar
• Vincent WF, James MR. 1996. Biodiversity in extreme aquatic environments: Lakes, ponds and streams of the Ross Sea sector, Antarctica. Biodivers Conserv. 5(11):1451–1471.
   Web of Science ®Google Scholar
• West A, Galy A, Bickle M. 2005. Tectonic and climatic controls on silicate weathering. Earth Planet. Sci. Lett. 235(1-2):211–228. doi: 10.1016/j.epsl.2005.03.020
   Web of Science ®Google Scholar
• White AF, Blum AE. 1995. Effects of climate on chemical_ weathering in watersheds. Geochim Cosmochim Acta. 59(9):1729–1747.
   Web of Science ®Google Scholar
• Wolff-Boenisch D, Gislason SR, Oelkers EH, Putnis CV. 2004. The dissolution rates of natural glasses as a function of their composition at pH 4 and 10.6, and temperatures from 25 to 74 °C. Geochim Cosmochim Acta. 68(23):4843–4858.
   Web of Science ®Google Scholar
• Wynn-Williams DD, Edwards HGM. 2002. Environmental UV radiation: Biological strategies for protection and avoidance. In: Horneck G, Baumstark-Khan C, editors. Astrobiology: The Quest for the Conditions of Life. Berlin, Heidelberg: Springer, p. 245–260.
   Google Scholar
• Ye Q, Tong J, Xiao S, Zhu S, An Z, Tian L, Hu J. 2015. The survival of benthic macroscopic phototrophs on a Neoproterozoic snowball Earth. Geology. 43(6):507–510.
   Web of Science ®Google Scholar