293
Views
7
CrossRef citations to date
0
Altmetric
Articles

Relationships of the New Guinean subspecies, Gymnorhina tibicen papuana, of the Australian Magpie: an assessment from DNA sequence data

ORCID Icon, , , &
Pages 305-315 | Received 22 May 2016, Accepted 24 Apr 2017, Published online: 14 Jun 2017

References

  • Baker, A. M., Mather, P. B., and Hughes, J. M. (2000). Population genetic structure of Australian magpies: Evidence for regional differences in juvenile dispersal behaviour. Heredity 85, 167–176. doi:10.1046/j.1365-2540.2000.00733.x
  • Bangs, O., and Peters, J. L. (1926). A collection of birds from southwestern New Guinea (Merauke coast and inland). Bulletin of the Museum of Comparative Zoology 67, 419–434.
  • Barrett, G., Silcocks, A., Barry, S., Cunningham, R., and Poulter, R. (2003). ‘The New Atlas of Australian Birds.’ (Royal Australasian Ornithologists Union: Melbourne).
  • Bishop, K. D. (2006). Shorebirds in New Guinea: Their status, conservation and distribution. Stilt 50, 103–134.
  • Black, A. (1986). The taxonomic affinity of the New Guinean Magpie Gymnorhina-tibicen-papuana. Emu 86, 65–70. doi:10.1071/MU9860065
  • Black, A., and Ford, J. (1982). Magpies similar to the white-backed Magpie in inland Western Australia. Corella 6, 114–118.
  • Clapp, G. E. (1979). Preliminary report on the flycatcher Microeca flavigaster and the honeyeater Melithreptus albogularis found in eucalyptus trees in the Northern Province of Papua New Guinea. Papua New Guinea Bird Society Newsletter 159, 6–8.
  • Clement, M., Posada, D., and Crandall, K. A. (2000). TCS: A computer program to estimate gene genealogies. Molecular Ecology 9, 1657–1659. doi:10.1046/j.1365-294x.2000.01020.x
  • Coates, B. Z. (1985). ‘Birds of Papua New Guinea Volume 2.’ (Dove Publications: Alderley, Queensland).
  • Del Hoyo, J., and Collar, N. J. (2016). ‘HBW and Birdlife International Illustrated Checklist of the Birds of the World’. Volume 2: Passerines.’ (Lynx Edicions: Barcelona).
  • Dickinson, E. C., and Christidis, L. (2014). ‘The Howard & Moore Complete Checklist of the Birds of Thr World Vol. 2,’ 4th edn. (Eastbourne, U.K: Aves Press).
  • Edwards, S. V. (1993). Long-distance gene flow in a cooperative breeder detected in genealogies of mitochondrial DNA sequences. Proceedings of the Royal Society B: Biological Sciences 252, 177–185. doi:10.1098/rspb.1993.0063
  • Flannery, T. (1995). ‘Mammals of New Guinea.’ (Cornell University Press: Ithaca, NY).
  • Georges, A., Guarino, F., and Bito, B. (2006). Freshwater turtles of the Trans Fly region of Papua New Guinea – notes on diversity, distribution, reproduction, harvest and trade. Wildlife Research 33, 373–384. doi:10.1071/WR05087
  • Goloboff, P. A., Farris, J. S., and Nixon, K. C. (2008). TNT, a free program for phylogenetic analysis. Cladistics 24, 774-786. doi:10.1111/j.1096-0031.2008.00217.x
  • Guindon, S., Dufayard, J. F., Lefort, V., Anisimova, M., Hordijk, W., and Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: Assessing the performance of PhyML 3.0. Systematic Biology 59, 307–321. doi:10.1093/sysbio/syq010
  • Higgins, P. J., Peter, J. M., and Cowling, S. J. (2006). ‘Handbook of Australian, New Zealand and Antarctic Birds. Boatbill to Starlings, Vol. 7.’ (Oxford University Press: Melbourne).
  • Hocknull, S. A., Zhao, J. X., Feng, Y. X., and Webb, G. E. (2007). Responses of Quaternary rainforest vertebrates to climate change in Australia. Earth and Planetary Science Letters 264, 317–331. doi:10.1016/j.epsl.2007.10.004
  • Höft, R. E. (1992). ‘Plants of New Guinea and the Solomon Islands: Dictionary of the Genera and Families of Flowering Plants and Ferns.’ (Wau Ecology Institute Handbook, 13: Wau).
  • Hughes, J. M., Baker, A. M., De Zylva, G., and Mather, P. B. (2001). A phylogeographic analysis of southern and eastern populations of the Australian magpie: Evidence for selection in maintenance of the distribution of two plumage morphs. Biological Journal of the Linnean Society 74, 25–34. doi:10.1111/j.1095-8312.2001.tb01374.x
  • Irestedt, M., Batalha-Filho, H., Roselaar, C. S., Christidis, L., and Ericson, P. G. P. (2016). Contrasting phylogeographic signatures in two Australo-Papuan bowerbird species complexes (Aves: Ailuroedus). Zoological Scripta 45, 365–379. doi:10.1111/zsc.12163
  • Joseph, L., Slikas, B., Alpers, D., and Schodde, R. (2001). Molecular systematics and phylogeography of New Guinean logrunners (Orthonychidae). Emu 101, 273–280. doi:10.1071/MU01008
  • Joseph, L., Toon, A., Nyári, Á. S., Longmore, N. W., Rowe, K. M. C., Haryoko, T., Trueman, J., and Gardner, J. L. (2014). A new synthesis of the molecular systematics and biogeography of honeyeaters (Passeriformes: Meliphagidae) highlights biogeographical and ecological complexity of a spectacular avian radiation. Zoologica Scripta 43, 235–248. doi:10.1111/zsc.12049
  • Katoh, K., and Standley, D. M. (2013). MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability. Molecular Biology and Evolution 30, 772–780. doi:10.1093/molbev/mst010
  • Kearns, A. M., Joseph, L., and Cook, L. G. (2013). A multilocus coalescent analysis of the speciational history of the australo-papuan butcherbirds and their allies. Molecular Phylogenetics And Evolution 66, 941–952. doi:10.1016/j.ympev.2012.11.020
  • Kearns, A. M., Joseph, L., Omland, K. E., and Cook, L. G. (2011). Testing the effect of transient Plio-Pleistocene barriers in monsoonal Australo-Papua: Did mangrove habitats maintain genetic connectivity in the Black Butcherbird? Molecular Ecology 20, 5042–5059. doi:10.1111/mec.2011.20.issue-23
  • Kearns, A. M., Joseph, L., Toon, A., and Cook, L. G. (2014). Australia’s arid-adapted butcherbirds experienced range expansions during Pleistocene glacial maxima. Nature Communications 5, 3994. doi:10.1038/ncomms4994
  • Kearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C., Thierer, T., Ashton, B., Mentjies, P., and Drummond, A. (2012). Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics 28, 1647–1649. doi:10.1093/bioinformatics/bts199
  • Lambeck, K., Rouby, H., Purcella, A., Sunc, Y., and Sambridgea, M. (2014). Sea level and global ice volumes from the Last Glacial Maximum to the Holocene. Proceedings of the National Academy of Sciences of the United States of America 111, 15296–15303. doi:10.1073/pnas.1411762111
  • Lanyon, S. M., and Hall, J. G. (1994). Reexamination of barbet monophyly using mitonchondiral-DNA sequence data. The Auk 111, 389–397. doi:10.2307/4088602
  • Leigh, J. W., Bryant, D., and Nakagawa, S. (2015). Popart: Full-feature software for haplotype network construction. Methods in Ecology and Evolution 6, 1110–1116. doi:10.1111/2041-210X.12410
  • Macqueen, P., Seddon, J. M., Austin, J. J., Hamilton, S., and Goldizen, A. W. (2010). Phylogenetics of the pademelons (Macropodidae: Thylogale) and historical biogeography of the Australo-Papuan region. Molecular Phylogenetics and Evolution 57, 1134–1148. doi:10.1016/j.ympev.2010.08.010
  • McCrie, N., and Watson, J. (2009). ‘Finding Birds in Darwin, Kakadu and the Top End.’ (Niven McCrie: Casuraina).
  • Mees, G. F. (1964). Notes on two small collections of birds from New Guinea. Zoologische Verhandelingen (Leiden) 66, 1–37.
  • Mees, G. F. (1982). Birds from the lowlands of southern New Guinea (Merauke and Koembe). Zoologische Verhandelingen 191, 1–188.
  • Miller, S. A., Dykes, D. D., and Polesky, H. F. (1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Research 16, 1215–1215. doi:10.1093/nar/16.3.1215
  • Mitchell, K. J., Pratt, R. C., Watson, L. N., Gibb, G. C., Llamas, B., Kasper, M., Edson, J., Hopwood, B., Male, D., Armstrong, K. N., Meyer, M., Hofreiter, M., Austin, J., Donnellan, S. C., Lee, M. S., Phillips, M. J., and Cooper, A. (2014). Molecular phylogeny, biogeography, and habitat preference evolution of marsupials. Molecular Biology and Evolution 31, 2322–2330. doi:10.1093/molbev/msu176
  • Olson, D. M., and Dinerstein, E. (2002). The global 200: Priority ecoregions for global conservation. Annals of the Missouri Botanic Gardens 89, 199–224. doi:10.2307/3298564
  • Pratt, T., and Beehler, B. (2015). ‘Birds of New Guinea,’ 2nd edn. (Princeton: Princeton University Press).
  • Rambaut, A., and Drummond, A. J. (2007). ‘Tracer v1.4.’ http://tree.bio.ed.ac.uk/software/tracer/
  • Rand, A. L. (1942). Results of the Archbold Expeditions. No. 42. Birds of the 1936-1937 New Guinea expedition. Bulletin of the American Museum of Natural History 79, 289–366.
  • Rand, A. L., and Gilliard, E. T. (1967). ‘Handbook of New Guinea Birds.’ (Weidenfeld and Nicolson: United Kingdom).
  • Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D. L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M. A., and Huelsenbeck, J. P. (2012). MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology 61, 539–542. doi:10.1093/sysbio/sys029
  • Roshier, D. A., Heinsohn, R., Adcock, G. J., Beerli, P., and Joseph, L. (2012). Biogeographic models of gene flow in two waterfowl of the Australo-Papuan tropics. Ecology and Evolution 2, 2803–2814. doi:10.1002/ece3.2012.2.issue-11
  • Schidelko, K., Wüstenhagen, N., Stiels, D., Van Den Elzen, R., and Rödder, D. (2013). Continental shelf as potential retreat areas for Austral-Asian estrildid finches (Passeriformes: Estrildidae) during the Pleistocene. Journal of Avian Biology 44, 121–132. doi:10.1111/jav.2013.44.issue-2
  • Schodde, R., and Calaby, J. H. (1972). The biogeography of the Australo-Papuan bird and mammal faunas in relation to Torres Strait. In ‘Bridge and Barrier, the Natural and Cultural History of the Torres Strait’. (Ed. D. Walker.) pp. 257–300. (Australian National University Press: Canberra).
  • Schodde, R., and Mason, I. J. (1999). ‘The Directory of Australian Birds: Passerines.’ (CSIRO Publishing: Melbourne).
  • Storr, G. M. (1977). Birds of the Northern Territory. Special Publications of the Western Australian Museum 7, 1–130.
  • Storr, G. M. (1984). Revised List of Queensland birds. Records of the Western Australian Museum Supplement 19, 1–189.
  • Toon, A., Austin, J. J., Dolman, G., Pedler, L., and Joseph, L. (2012). Evolution of arid zone birds in Australia: Leapfrog distribution patterns and mesic-arid connections in quail-thrush (Cinclosoma, Cinclosomatidae). Molecular Phylogenetics and Evolution 62, 286–295. doi:10.1016/j.ympev.2011.09.026
  • Toon, A., Hughes, J., Baker, A., and Mather, P. (2003). Discordance between morphology and genetic structure among three plumage forms of the Australian magpie. Emu 103, 337–343. doi:10.1071/MU02032
  • Toon, A., Mather, P. B., Baker, A. M., Durrant, K. L., and Hughes, J. M. (2007). Pleistocene refugia in an arid landscape: Analysis of a widely distributed Australian passerine. Molecular Ecology 16, 2525–2541. doi:10.1111/mec.2007.16.issue-12
  • Toussaint, E. F., Hall, R., Monaghan, M. T., Sagata, K., Ibalim, S., Shaverdo, H. V., Vogler, A. P., Pons, J., and Balke, M. (2014). The towering orogeny of New Guinea as a trigger for arthropod megadiversity. Nature Communications 5, 4001. doi:10.1038/ncomms5001
  • Voris, H. K. (2000). Maps of Pleistocene sea levels in Southeast Asia: Shorelines, river systems and time durations. Journal of Biogeography 27, 1153–1167. doi:10.1046/j.1365-2699.2000.00489.x
  • Werle, E., Schneider, C., Renner, M., Volker, M., and Fiehn, W. (1994). Convenient single-step, one tube purification of PCR products for direct sequencing. Nucleic Acids Research 22, 4354–4355. doi:10.1093/nar/22.20.4354
  • Yokoyama, Y., Purcell, A., Lambeck, K., and Johnston, P. (2001). Shore-line reconstruction around Australia during the last glacial maximum and late glacial stage. Quaternary International 83–85, 9–18. doi:10.1016/S1040-6182(01)00028-3

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.