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Special Issue: Hydrological Science for Environmental Flows

Quantifying flow–ecology relationships with functional linear models

Quantification des relations débit–écologie par des modèles linéaires fonctionnels

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Pages 629-644 | Received 25 Oct 2012, Accepted 16 Aug 2013, Published online: 10 Apr 2014

REFERENCES

  • Abell, R., et al., 2008. Freshwater ecoregions of the world: a new map of biogeographic units for freshwater biodiversity conservation. BioScience, 58, 403–414. doi:10.1641/B580507
  • Ainsworth, L.M., Routledge, R., and Cao, J., 2011. Functional data analysis in ecosystem research: the decline of Oweekeno Lake sockeye salmon and Wannock River flow. Journal of Agricultural, Biological and Environmental Statistics, 16, 282–300. doi:10.1007/s13253-010-0049-z
  • Arthington, A.H., et al., 2006. The challenge of providing environmental flow rules to sustain river ecosystems. Ecological Applications, 16, 1311–1318. doi:10.1890/1051-0761(2006)016[1311:TCOPEF]2.0.CO;2
  • Biggs, B.J.F., Nikora, V.I., and Snelder, T.H., 2005. Linking scales of flow variability to lotic ecosystem structure and function. River Research and Applications, 21, 283–298. doi:10.1002/rra.847
  • Bliesner, R., et al., 1999. Chapter 4: Physical and biological response to test flows. In: P.B. Holden, ed. Flow recommendations for the San Juan River, San Juan River Basin Recovery Implementation Program. Albuquerque, NM: USFWS, 4–1–4–88.
  • Bliesner, R., et al., 2009. Hydrology, geomorphology, and habitat studies. 2008 annual report, San Juan River Basin Recovery Implementation Program. Albuquerque, NM: USFWS.
  • Bradshaw, G.A. and Spies, T.A., 1992. Characterizing canopy gap structure in forests using wavelet analysis. The Journal of Ecology, 80, 205–215.
  • Brewer, S.K., 2013. Groundwater influences on the distribution and abundance of riverine smallmouth bass, Micropterus dolomieu, in pasture landscapes of the midwestern USA. River Research and Applications, 29, 269–278.
  • Clausen, B. and Biggs, B.J.F., 2000. Flow variables for ecological studies in temperate streams: groupings based on covariance. Journal of Hydrology, 237, 184–197. doi:10.1016/S0022-1694(00)00306-1
  • Cooke, S.J., et al., 2005. Threats, conservation strategies, and prognosis for suckers (Catostomidae) in North America: insights from regional case studies of a diverse family of non-game fishes. Biological Conservation, 121, 317–331. doi:10.1016/j.biocon.2004.05.015
  • Crainiceanu, C.M. and Goldsmith, A.J., 2010. Bayesian functional data analysis using WinBUGS. Journal of Statistical Software, 32, 1–33.
  • Farringer, R.T., Echelle, A.A., and Lehtinen, S.F., 1979. Reproductive cycle of the red shiner, Notropis lutrensis, in central Texas and South Central Oklahoma. Transactions of the American Fisheries Society, 108, 271–276. doi:10.1577/1548-8659(1979)108<271:RCOTRS>2.0.CO;2
  • Franssen, N.R., Gido, K.B., and Propst, D.L., 2007. Flow regime affects availability of native and nonnative prey of an endangered predator. Biological Conservation, 138, 330–340. doi:10.1016/j.biocon.2007.04.028
  • Gao, Y., et al., 2009. Development of representative indicators of hydrologic alteration. Journal of Hydrology, 374, 136–147. doi:10.1016/j.jhydrol.2009.06.009
  • Gido, K.B. and Propst, D.L., 1999. Habitat use and association of native and nonnative fishes in the San Juan River, New Mexico and Utah. Copeia, 1999, 321–333. doi:10.2307/1447478
  • Gido, K.B. and Propst, D.L., 2012. Long-term dynamics of native and nonnative fishes in the San Juan River, New Mexico and Utah, under a partially managed flow regime. Transactions of the American Fisheries Society, 141, 645–659. doi:10.1080/00028487.2012.683471
  • Gido, K.B., et al., 2013. Multi-decadal responses of native and introduced fishes to natural and altered flow regimes in the American Southwest. Canadian Journal of Fisheries and Aquatic Sciences, 70. doi:10.1139/cjfas-2012-0441
  • Holden, P.B., ed., 1999. Flow recommendations for the San Juan River. San Juan River Basin Recovery Implementation Program. Albuquerque, NM: USFWS.
  • John, K.R., 1963. The effect of torrential rains on the reproductive cycle of Rhinichthys osculus in the Chiricahua Mountains, Arizona. Copeia, 1963, 286–291. doi:10.2307/1441345
  • Jowett, I.G. and Biggs, B.J.F., 2009. Application of the ‘natural flow paradigm’ in a New Zealand context. River Research and Applications, 25, 1126–1135. doi:10.1002/rra.1208
  • Kennard, M.J., et al., 2010. Quantifying uncertainty in estimation of hydrologic metrics for ecohydrological studies. River Research and Applications, 26, 137–156.
  • Kennard, M.J., et al., 2007. Multiscale effects of flow regime and habitat and their interaction on fish assemblage structure in eastern Australia. Canadian Journal of Fisheries and Aquatic Sciences, 64, 1346–1359. doi:10.1139/f07-108
  • Manly, B.F.J., 2007. Randomization, bootstrap and Monte Carlo methods in biology. Boca Raton, FL: Chapman & Hall.
  • Mathews, R. and Richter, B.D., 2007. Application of the indicators of hydrologic alteration software in environmental flow setting. Journal of the American Water Resources Association, 43, 1400–1413. doi:10.1111/j.1752-1688.2007.00099.x
  • Mims, M.C. and Olden, J.D., 2012. Life history theory predicts fish assemblage response to hydrologic regimes. Ecology, 93, 35–45.
  • Minckley, W.L. and Marsh, P.C., 2009. Inland fishes of the Greater Southwest: chronicle of a vanishing biota. Tucson, AZ: The University of Arizona Press.
  • Moore, S.L. and Thorp, J.H., 2008. Coping with hydrogeomorphic variations in a prairie river: resiliency in young-of-the-year fishes. River Research and Applications, 24, 267–278. doi:10.1002/rra.1057
  • Müller, H.-G. and Stadtmüller, U., 2005. Generalized functional linear models. Annals of Statistics, 33, 774–805. doi:10.1214/009053604000001156
  • Naiman, R.J., et al., 2008. Flow variability and the biophysical vitality of river systems. Comptes Rendus Geoscience, 340, 629–643. doi:10.1016/j.crte.2008.01.002
  • Olden, J.D. and Kennard, M.J., 2010. Intercontinental comparison of fish life history strategies along a gradient of hydrologic variability. In: K.B. Gido and D.A. Jackson, eds. Community ecology of stream fishes: concepts, approaches, and techniques. Bethesda, MD: American Fisheries Society, 83–107.
  • Olden, J.D., Kennard, M.J., and Pusey, B.J., 2012. A framework for hydrologic classification with a review of methodologies and applications in ecohydrology. Ecohydrology, 5, 503–518. doi:10.1002/eco.251
  • Olden, J.D. and Poff, N.L., 2003. Redundancy and the choice of hydrologic indices for characterizing streamflow regimes. River Research and Applications, 19, 101–121. doi:10.1002/rra.700
  • Olden, J.D., Poff, N.L., and Bestgen, K.R., 2006. Life-history strategies predict fish invasions and extirpations in the Colorado River Basin. Ecological Monographs, 76, 25–40. doi:10.1890/05-0330
  • Paukert, C. and Rogers, R.S., 2004. Factors affecting condition of flannelmouth suckers in the Colorado River, Grand Canyon, Arizona. North American Journal of Fisheries Management, 24, 648–653. doi:10.1577/M03-087.1
  • Peterson, J.T. and Rabeni, C.F., 1996. Natural thermal refugia for temperate warmwater stream fishes. North American Journal of Fisheries Management, 16, 738–746. doi:10.1577/1548-8675(1996)016<0738:NTRFTW>2.3.CO;2
  • Poff, N.L. and Allan, J.D., 1995. Functional organization of stream fish assemblages in relation to hydrological variability. Ecology, 76, 606–627. doi:10.2307/1941217
  • Poff, N.L. and Ward, J.V., 1989. Implications of streamflow variability and predictability for lotic community structure: a regional analysis of streamflow patterns. Canadian Journal of Fisheries and Aquatic Sciences, 46, 1805–1818. doi:10.1139/f89-228
  • Poff, N.L. and Zimmerman, J.K.H., 2010. Ecological responses to altered flow regimes: a literature review to inform the science and management of environmental flows. Freshwater Biology, 55, 194–205. doi:10.1111/j.1365-2427.2009.02272.x
  • Poff, N.L., et al., 1997. The natural flow regime: a paradigm for river conservation and restoration. BioScience, 47, 769–784. doi:10.2307/1313099
  • Poff, N.L., et al., 2010. The Ecological Limits of Hydrologic Alteration (ELOHA): a new framework for developing regional environmental flow standards. Freshwater Biology, 55, 147–170. doi:10.1111/j.1365-2427.2009.02204.x
  • Priestley, M.B., 1991. Spectral analysis and time series. London: Academic Press.
  • Propst, D.L. and Gido, K.B., 2004. Responses of native and nonnative fishes to natural flow regime mimicry in the San Juan River. Transactions of the American Fisheries Society, 133, 922–931. doi:10.1577/T03-057.1
  • Puckridge, J.T., et al., 1998. Flow variability and the ecology of large rivers. Marine and Freshwater Research, 49, 55–72. doi:10.1071/MF94161
  • Ramsay, J., Hooker, G., and Graves, S., 2010. Functional data analysis with R and Matlab. New York: Springer.
  • Ramsay, J.O., et al., 2011. fda: Functional Data Analysis [online]. R package version 2.2.7. Available from: http://CRAN.R–project.org/package=fda [Accessed 20 March 2012].
  • Ramsay, J.O. and Silverman, B.W., 2002. Applied functional data analysis: methods and case studies. New York: Springer.
  • Ramsay, J.O. and Silverman, B.W., 2006. Functional data analysis. New York: Springer.
  • R Development Core Team, 2012. R: A language and environment for statistical computing [online]. R Foundation for Statistical Computing, Vienna. Available from: http://www.R–project.org/ [Accessed 20 March 2012].
  • Richter, B.D., et al., 1996. A method for assessing hydrologic alteration within ecosystems. Conservation Biology, 10, 1163–1174. doi:10.1046/j.1523-1739.1996.10041163.x
  • Richter, B.D., et al., 2006. A collaborative and adaptive process for developing environmental flow recommendations. River Research and Applications, 22, 297–318. doi:10.1002/rra.892
  • Roberts, M.E., et al., 2006. Reproductive ecology and food habits of the blacknose shiner, Notropis heterolepis, in northern Illinois. The American Midland Naturalist, 155, 70–83. doi:10.1674/0003-0031(2006)155[0070:REAFHO]2.0.CO;2
  • Sabo, J.L. and Post, D.M., 2008. Quantifying periodic, stochastic, and catastrophic environmental variation. Ecological Monographs, 78, 19–40. doi:10.1890/06-1340.1
  • Steel, E.A. and Lange, I.A., 2007. Using wavelet analysis to detect changes in water temperature regimes at multiple scales: effects of multi-purpose dams in the Willamette River basin. River Research and Applications, 23, 351–359. doi:10.1002/rra.985
  • Stewart, G., Anderson, R., and Wohl, E., 2005. Two-dimensional modelling of habitat suitability as a function of discharge on two Colorado rivers. River Research and Applications, 21, 1061–1074. doi:10.1002/rra.868
  • Stewart-Koster, B., et al., 2011. Fish response to the temporal hierarchy of the natural flow regime in the Daly River, northern Australia. Journal of Fish Biology, 79, 1525–1544. doi:10.1111/j.1095-8649.2011.03072.x
  • Tedesco, P., et al., 2008. River hydrological seasonality influences life history strategies of tropical riverine fishes. Oecologia, 156, 691–702. doi:10.1007/s00442-008-1021-2
  • Winemiller, K.O. and Rose, K.A., 1992. Patterns of life-history diversification in North American fishes: implications for population regulation. Canadian Journal of Fisheries and Aquatic Sciences, 49, 2196–2218. doi:10.1139/f92-242
  • Zeug, S.C. and Winemiller, K.O., 2007. Ecological correlates of fish reproductive activity in floodplain rivers: a life history based approach. Canadian Journal of Fisheries and Aquatic Sciences, 64, 1291–1301. doi:10.1139/f07-094

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