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Articles

Advances and applications of molecular cloning in clinical microbiology

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Pages 65-78 | Received 20 Jan 2014, Accepted 21 Mar 2014, Published online: 14 Jul 2014

References

  • Aiuti, A., & Roncarolo, M. G. (2009). Ten years of gene therapy for primary immune deficiencies. Hematology/The Education Program of the American Society of Hematology American Society of Hematology, 1, 682–689.
  • Ali, H., & Murrell, J. C. (2009). Development and validation of promoter-probe vectors for the study of methane monooxygenase gene expression in Methylococcus capsulatus Bath. Microbiology, 155, 761–771.
  • Alvarez-Barrientos, A., Arroyo, J., Canton, R., Nombela, C., & Sanchez-Perez, M. (2000). Applications of flow cytometry to clinical microbiology. Clinical Microbiology Reviews, 13, 167–195.
  • Amann, R. I., Ludwig, W., & Schleifer, K. H. (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiological Reviews, 59, 143–169.
  • Asnis, L. A., & Gaspari, A. A. (1995). Cutaneous reactions to recombinant cytokine therapy. Journal of the American Academy of Dermatology, 33, 393–410; quiz 410-392.
  • Atzpodien, J., Royston, P., Stoerkel, S., & Reitz, M. (2007). Fractional polynomials in a new metastatic renal carcinoma continuous prognostic index involving histology, laboratory, and clinical predictors. Cancer Biotherapy & Radiopharmaceuticals, 22, 812–818.
  • Bandaranayake, A. D., Correnti, C., Ryu, B. Y., Brault, M., Strong, R. K., & Rawlings, D. J. (2011). Daedalus: A robust, turnkey platform for rapid production of decigram quantities of active recombinant proteins in human cell lines using novel lentiviral vectors. Nucleic Acids Research, 39, e143.
  • Bermúdez-Humarán, L. G., Kharrat, P., Chatel, J. M., & Langella, P. (2011). Lactococci and lactobacilli as mucosal delivery vectors for therapeutic proteins and DNA vaccines. Microbial Cell Factories, 10, S4.
  • Brissenden, J. E., Roscoe, J. M., Simpson, N. E., & Silverman, M. (1991). Linkage exclusion between the autosomal dominant polycystic kidney disease locus and chromosome 16 markers in a new family. Journal of the American Society of Nephrology, 2, 913–919.
  • Brogden, K. A., Guthmiller, J. M., & Taylor, C. E. (2005). Human polymicrobial infections. The Lancet, 365, 253–255.
  • Collins, P. L., & Murphy, B. R. (2005). New generation live vaccines against human respiratory syncytial virus designed by reverse genetics. Proceedings of the American Thoracic Society, 2, 166–173.
  • Copeland, N. G., Jenkins, N. A., & Court, D. L. (2001). Recombineering: A powerful new tool for mouse functional genomics. Nature Reviews Genetics, 2, 769–779.
  • Dallas, W. S., Ray, P. H., Leong, J., Benedict, C. D., Stamm, L. V., & Bassford Jr., P. J. (1987). Identification and purification of a recombinant Treponema pallidum basic membrane protein antigen expressed in Escherichia coli. Infection and Immunity, 55, 1106–1115.
  • Descotes, J. (2009). Immunotoxicity of monoclonal antibodies. MAbs, 1, 104–111.
  • Diegutis, P. S., Keirnan, E., Burnett, L., Nightingale, B. N., & Cossart, Y. E. (1986). False-positive results with hepatitis B virus DNA dot-hybridization in hepatitis B surface antigen-negative specimens. Journal of Clinical Microbiology, 23, 797–799.
  • Errante, P. R., Frazao, J. B., & Condino-Neto, A. (2008). The use of interferon-gamma therapy in chronic granulomatous disease. Recent Patents on Anti-Infective Drug Discovery, 3, 225–230.
  • Estivill, X., McLean, C., Nunes, V., Casals, T., Gallano, P., Scambler, P, & Williamson, R. (1989). Isolation of a new DNA marker in linkage disequilibrium with cystic fibrosis, situated between J3.11 (D7S8) and IRP. American Journal of Human Genetics, 44, 704–710.
  • Fakruddin, M., Mazumdar, R. M., Khanjada, S. B. M., Chowdhury, A., & Hossain, M. N. (2013). Critical factors affecting the success of cloning, expression, and mass production of enzymes by recombinant E. coli. ISRN Biotechnology, 2013, 1–7.
  • Ferrari, G., Rossini, S., Nobili, N., Maggioni, D., Garofalo, A., Giavazzi, R., … Bordignon, C. (1992). Transfer of the ADA gene into human ADA-deficient T lymphocytes reconstitutes specific immune functions. Blood, 80, 1120–1124.
  • Filice, G., Cereda, P. M., Orsolini, P., Soldini, L., Romero, E., & Rondanelli, E. G. (1990). Kinetics of p24 antigenemia, IgM, IgG antibodies to p24 and p41 and Ig virus isolation in rabbits experimentally infected with HIV-1. Microbiologica, 13, 215–224.
  • Fuursted, K., Arpi, M., Lindblad, B. E., & Pedersen, L. N. (2008). Broad-range PCR as a supplement to culture for detection of bacterial pathogens in patients with a clinically diagnosed spinal infection. Scandinavian Journal of Infectious Diseases, 40, 772–777.
  • Gibbs, R. A., & Caskey, C. T. (1989). The application of recombinant DNA technology for genetic probing in epidemiology. Annual Review of Public Health, 10, 27–48.
  • Goldenberger, D., Kunzli, A., Vogt, P., Zbinden, R., & Altwegg, M. (1997). Molecular diagnosis of bacterial endocarditis by broad-range PCR amplification and direct sequencing. Journal of Clinical Microbiology, 35, 2733–2739.
  • Goto, N., Maeyama, J., Yasuda, Y., Isaka, M., Matano, K., Kozuka, S., … Tochikubo, K. (2000). Safety evaluation of recombinant cholera toxin B subunit produced by Bacillus brevis as a mucosal adjuvant. Vaccine, 18, 2164–2171.
  • Griffith, D. E., Aksamit, T., Brown-Elliott, B. A., Catanzaro, A., Daley, C., Gordin, F., … Iseman, M. (2007). An official ATS/IDSA statement: Diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases. American Journal of Respiratory and Critical Care Medicine, 175, 367–416.
  • Hadden, J. W. (2003). Immunodeficiency and cancer: Prospects for correction. International Immunopharmacology, 3, 1061–1071.
  • Harper, P. S., Youngman, S., Anderson, M. A., Sarfarazi, M., Quarrell, O., Tanzi, R., … Gusella, J. F. (1985). Genetic linkage between huntington’s disease and the DNA polymorphism G8 in South Wales families. Journal of Medical Genetics, 22, 447–450.
  • Headley, A. J. (2003). Necrotizing soft tissue infections a primary care review. American Family Physician, 68, 323–328.
  • House, D., Chinh, N. T., Diep, T. S., Parry, C. M., Wain, J., Dougan, G., … Farrar, J. J. (2005). Use of paired serum samples for serodiagnosis of typhoid fever. Journal of Clinical Microbiology, 43, 4889–4890.
  • Huang, H., Patel, D. D., & Manton, K. G. (2005). The immune system in aging: Roles of cytokines, T cells and NK cells. Frontiers in Bioscience, 10, 192–215.
  • Ieven, M., Ursi, D., Van Bever, H., Quint, W., Niesters, H. G., & Goossens, H. (1996). Detection of Mycoplasma pneumoniae by two polymerase chain reactions and role of M. pneumoniae in acute respiratory tract infections in pediatric patients. The Journal of Infectious Diseases, 173, 1445–1452.
  • Isenberg, H. D. (2003). Clinical microbiology: Past, present, and future. Journal of Clinical Microbiology, 41, 917–918.
  • Jang, Y. H., & Seong, B.-L. (2012). Principles underlying rational design of live attenuated influenza vaccines. Clinical and Experimental Vaccine Research, 1, 35–49.
  • Jeong, Y. J., Kang, H. J., Bae, K. H., Kim, M. G., & Chung, S. J. (2010). Efficient selection of IgG Fc domain-binding peptides fused to fluorescent protein using E. coli expression system and dot-blotting assay. Peptides, 31, 202–206.
  • Joosten, V., Lokman, C., Van Den Hondel, C. A., & Punt, P. J. (2003). The production of antibody fragments and antibody fusion proteins by yeasts and filamentous fungi. Microbial Cell Factories, 2(1), 1–15.
  • Kaur, H., Dhanao, J., & Oberoi, A. (2000). Evaluation of rapid kits for detection of HIV, HBsAg and HCV infections. Indian Journal of Medical Sciences, 54, 432–434.
  • Keating, G. M., & Noble, S. (2003). Recombinant hepatitis B vaccine (Engerix-B): A review of its immunogenicity and protective efficacy against hepatitis B. Drugs, 63, 1021–1051.
  • Kieback, D. G., Delvoux, B., Romano, A., Ollig, S., & Fischer, D. C. (2008). Persistent adenovirus-mediated thymidine kinase gene expression in ovarian cancer cells increases cell killing efficacy over time. Anticancer Research, 28, 2569–2575.
  • Kim, J. M., Park, S. M., & Kim, D. H. (2010). Heterologous expression of a tannic acid-inducible laccase3 of Cryphonectria parasitica in Saccharomyces cerevisiae. BMC Biotechnology, 10, 1–18.
  • Kim, J. Y., Sajjan, U. S., Krasan, G. P., & LiPuma, J. J. (2005). Disruption of tight junctions during traversal of the respiratory epithelium by Burkholderia cenocepacia. Infection and Immunity, 73, 7107–7112.
  • Kommedal, O., Kvello, K., Skjastad, R., Langeland, N., & Wiker, H. G. (2009). Direct 16S rRNA gene sequencing from clinical specimens, with special focus on polybacterial samples and interpretation of mixed DNA chromatograms. Journal of Clinical Microbiology, 47, 3562–3568.
  • Kuhnel, B., Alcantara, J., Boothe, J., van Rooijen, G., & Moloney, M. (2003). Precise and efficient cleavage of recombinant fusion proteins using mammalian aspartic proteases. Protein Engineering Design and Selection, 16, 777–783.
  • Lazos, S. A., & Tsiftsoglou, A. S. (1998). Production and purification of recombinant human cytokines (rhIL-4, rhGM-CSF, and rhIL-1beta) from genetically engineered E. coli cells bearing pMAL expression vector constructs. Journal of Protein Chemistry, 17, 517–519.
  • Letvin, N. L. (2002). Strategies for an HIV vaccine. Journal of Clinical Investigation, 110, 15–27.
  • Liou, J. D., Chu, D. C., Cheng, P. J., Chang, S. D., Sun, C. F., Wu, Y. C., … Chiu, D. T. (2004). Human chromosome 21-specific DNA markers are useful in prenatal detection of down syndrome. Annals of Clinical and Laboratory Science, 34, 319–323.
  • Lu, J. Y., Lin, Y. Y., Qian, J., Tao, S. C., Zhu, J., Pickart, C., & Zhu, H. (2008). Functional dissection of a HECT ubiquitin E3 ligase. Molecular and Cellular Proteomics, 7, 35–45.
  • Lukyanov, K. A., Matz, M. V., Bogdanova, E. A., Gurskaya, N. G., & Lukyanov, S. A. (1996). Molecule by molecule PCR amplification of complex DNA mixtures for direct sequencing: An approach to in vitro cloning. Nucleic Acids Research, 24, 2194–2195.
  • Macrina, F. L. (1984). Molecular cloning of bacterial antigens and virulence determinants. Annual Review of Microbiology, 38, 193–219.
  • Matsuo, M., Oogai, Y., Kato, F., Sugai, M., & Komatsuzawa, H. (2011). Growth-phase dependence of susceptibility to antimicrobial peptides in Staphylococcus aureus. Microbiology, 157, 1786–1797.
  • Melton, D. A., Krieg, P. A., Rebagliati, M. R., Maniatis, T., Zinn, K., & Green, M. R. (1984). Efficient in vitro synthesis of biologically active RNA and RNA hybridization probes from plasmids containing a bacteriophage SP6 promoter. Nucleic Acids Research, 12, 7035–7056.
  • Menon, A. G., Gusella, J. F., & Seizinger, B. R. (1990). Progress towards the isolation and characterization of the genes causing neurofibromatosis. Cancer Surveys, 9, 689–702.
  • Mentag, R., Luckevich, M., Morency, M. J., & Seguin, A. (2003). Bacterial disease resistance of transgenic hybrid poplar expressing the synthetic antimicrobial peptide D4E1. Tree Physiology, 23, 405–411.
  • Messing, J. (1983). New M13 vectors for cloning. Methods in Enzymology, 101, 20–78.
  • Miyake, K., Iijima, O., Suzuki, N., Matsukura, M., & Shimada, T. (2001). Selective killing of human immunodeficiency virus-infected cells by targeted gene transfer and inducible gene expression using a recombinant human immunodeficiency virus vector. Human gene therapy, 12, 227–233.
  • Muller, C., Nolden, S., Gebhardt, P., Heinzelmann, E., Lange, C., Puk, O., … Schwartz, D. (2007). Sequencing and analysis of the biosynthetic gene cluster of the lipopeptide antibiotic Friulimicin in Actinoplanes friuliensis. Antimicrobial Agents and Chemotherapy, 51, 1028–1037.
  • Nguyen, H., Martinez, B., Oganesyan, N., & Kim, R. (2004). An automated small-scale protein expression and purification screening provides beneficial information for protein production. Journal of Structural and Functional Genomics, 5, 23–27.
  • Nolte, F. S. (2011). Hepatitis B and C viruses. In D. G. B. Leonard, A. Bagg, A. M. Caliendo, K. L. Kaul, & V. M. V. Deerlin (Eds.), Molecular pathology in clinical practice (pp. 411–424). New York, NY: Springer.
  • Norgard, M. V., & Miller, J. N. (1983). Cloning and expression of Treponema pallidum (Nichols) antigen genes in Escherichia coli. Infection and Immunity, 42, 435–445.
  • Olczak, M., & Olczak, T. (2006). Comparison of different signal peptides for protein secretion in nonlytic insect cell system. Analytical Biochemistry, 359, 45–53.
  • Pelham, A., O’Reilly, M. A., Malcolm, S., Levinsky, R. J., & Kinnon, C. (1990). RFLP and deletion analysis for X-linked chronic granulomatous disease using the cDNA probe potential for improved prenatal diagnosis and carrier determination. Blood, 76, 820–824.
  • Petrosino, J. F., Highlander, S., Luna, R. A., Gibbs, R. A., & Versalovic, J. (2009). Metagenomic pyrosequencing and microbial identification. Clinical Chemistry, 55, 856–866.
  • Petti, C. A., Simmon, K. E., Bender, J., Blaschke, A., Webster, K. A., Conneely, M. F., … Challapalli, M. (2008). Culture-negative intracerebral abscesses in children and adolescents from Streptococcus anginosus group infection a case series. Clinical Infectious Diseases, 46, 1578–1580.
  • Rappuoli, R., & Aderem, A. (2011). A 2020 vision for vaccines against HIV, tuberculosis and malaria. Nature, 473, 463–469.
  • Rogers, G. B., Stressmann, F. A., Walker, A. W., Carroll, M. P., & Bruce, K. D. (2010). Lung infections in cystic fibrosis: Deriving clinical insight from microbial complexity. Expert Review of Molecular Diagnostics, 10, 187–196.
  • Rosey, A. L., Abachin, E., Quesnes, G., Cadilhac, C., Pejin, Z., Glorion, C., … Ferroni, A. (2007). Development of a broad-range 16S rDNA real-time PCR for the diagnosis of septic arthritis in children. Journal of Microbiological Methods, 68, 88–93.
  • Running Deer, J., & Allison, D. S. (2004). High-level expression of proteins in mammalian cells using transcription regulatory sequences from the Chinese hamster EF-1α gene. Biotechnology Progress, 20, 880–889.
  • Savitskaia, K. I. (1993). Clinical microbiology the structure and functions of specialized laboratories. Antibiot Khimioter, 38, 49–55.
  • Scheffer, H., te Meerman, G. J., Kruize, Y. C., van den Berg, A. H., Penninga, D. P., Tan, K. E., … Buys, C. H. (1989). Linkage analysis of families with hereditary retinoblastoma nonpenetrance of mutation, revealed by combined use of markers within and flanking the RB1 gene. American Journal of Human Genetics, 45, 252–260.
  • Schuurman, T., de Boer, R. F., Kooistra-Smid, A. M., & van Zwet, A. A. (2004). Prospective study of use of PCR amplification and sequencing of 16S ribosomal DNA from cerebrospinal fluid for diagnosis of bacterial meningitis in a clinical setting. Journal of Clinical Microbiology, 42, 734–740.
  • Senn, L., Franciolli, M., Raoult, D., Moulin, A., Von Segesser, L., Calandra, T., & Greub, G. (2005). Coxiella burnetii vascular graft infection. BMC Infectious Diseases, 5, 109.
  • Song, L., Nakaar, V., Kavita, U., Price, A., Huleatt, J., Tang, J., … Maksymiuk, G. (2008). Efficacious recombinant influenza vaccines produced by high yield bacterial expression: A solution to global pandemic and seasonal needs. PLoS One, 3, e2257.
  • Stamatatos, L., Lim, M., & Cheng-Mayer, C. (2000). Generation and structural analysis of soluble oligomeric gp140 envelope proteins derived from neutralization-resistant and neutralization-susceptible primary HIV type 1 isolates. AIDS Research and Human Retroviruses, 16, 981–994.
  • Strachan, T., & Read, A. P. (1999). Studying human gene structure, expression and function using cultured cells and cell extracts. New York, NY: Human Molecular Genetics.
  • Tang, Y. W., Procop, G. W., & Persing, D. H. (1997). Molecular diagnostics of infectious diseases. Clinical Chemistry, 43, 2021–2038.
  • Taylor, M. A., McIntosh, M. A., Robbins, J, & Wise, K. S. (1983). Cloned genomic DNA sequences from Mycoplasma hyorhinis encoding antigens expressed in Escherichia coli. Proceedings of the National Academy of Sciences USA, 80, 4154–4158.
  • Trichas, G., Begbie, J., & Srinivas, S. (2008). Use of the viral 2A peptide for bicistronic expression in transgenic mice. BMC Biology, 6, 40.
  • Turner, A. K., Begon, M., Jackson, J. A., Bradley, J. E., & Paterson, S. (2011). Genetic diversity in cytokines associated with immune variation and resistance to multiple pathogens in a natural rodent population. PLoS Genetics, 7, e1002343.
  • Vandercam, B., Jeumont, S., Cornu, O., Yombi, J. C., Lecouvet, F., Lefèvre, P., … Gala, J. L. (2008). Amplification-based DNA analysis in the diagnosis of prosthetic joint infection. The Journal of Molecular Diagnostics, 10, 537–543.
  • van Embden, J. D., van der Donk, H. J., van Eijk, R. V., van der Heide, H. G., de Jong, J. A., van Olderen, M. F., … Schouls, L. M. (1983). Molecular cloning and expression of Treponema pallidum DNA in Escherichia coli K-12. Infection and Immunity, 42, 187–196.
  • Verma, R., Boleti, E., & George, A. J. (1998). Antibody engineering: Comparison of bacterial, yeast, insect and mammalian expression systems. Journal of Immunological Methods, 216, 165–181.
  • Weber, J. L., & Broman, K. W. (2001). Genotyping for human whole-genome scans past, present, and future. Advances in Genetics, 42, 77–96.
  • Welkerling, H., Geissdorfer, W., Aigner, T., & Forst, R. (2006). Osteomyelitis of the ulna caused by Porphyromonas gingivalis. Journal of Clinical Microbiology, 44, 3835–3837.
  • Wenman, W. M., and Lovett, M. A. (1982). Expression in E. coli of Chlamydia trachomatis antigen recognized during human infect ion. Nature, 296, 68–70.
  • Wheat, C. W. (2010). Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing. Genetica, 138, 433–451.
  • Wood, D. O., Atkinson, W. H., Sikorski, R. S., & Winkler, H. H. (1983). Expression of the Rickettsia prowazekii citrate synthase gene in Escherichia coli. Journal of Bacteriology, 155, 412–416.
  • Yang, Z. W., Chen, J. P., Wang, T., & Tian, Y. (2007). Immune response and protective efficacy in BALB/c mice induced by DNA vaccine encoding immunogenic protein of Legionella pneumophila. Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi, 23, 209–212.
  • Zolla-Pazner, S. (2004). Identifying epitopes of HIV-1 that induce protective antibodies. Nature Reviews, 4, 199–210.

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