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Original Article

The 16S-like, 5.8S and 23S-like rRNAs of the two varieties of Cryptococcus neoformans: sequence, secondary structure, phylogenetic analysis and restriction fragment polymorphisms

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Pages 163-180 | Accepted 13 Oct 1993, Published online: 09 Jul 2009

REFERENCES

  • Archie J.W. A randomization test for phylogenetic information in systematic data. Systematic Zoology 1989; 38: 239–252
  • Aulakh H.S., Straus S.E., Kwon-Chung K.J. Genetic relatedness of Filobasidiella neoformans (Cryptococcus neoformans) and Filobasidiella bacillispora (Cryptococcus bacillisporus) as determined by deoxyribonucleic acid base composition and sequence homology studies. International Journal of Systematic Bacteriology 1981; 31: 97–103
  • Bennett J.E., Kwon-Chung K.J., Theodore T.S. Biochemical differences between serotypes of Cryptococcus neoformans. Sabouraudia 1978; 16: 167–174
  • Bhattacharjee A.K., Bennett J.E., Glaudemans C.P.J. Capsular polysaccharides of Cryptococcus neoformans. Reviews of Infectious Diseases 1984; 6: 619–624
  • Casadevall A., Fan M. URA5 Gene of Cryptococcus neoformans var. gattii. Evidence for a close phylogenetic relationship between C. neoformans var. gattii and C. neoformans var. neoformans. Journal of General and Applied Microbiology 1992; 38: 491–495
  • Casadevall A., Freundlich L.F., Marsh L., Scharff M.D. Extensive allelic variation in Cryptococcus neoformans. Journal of Clinical Microbiology 1992; 30: 1080–1084
  • Devereux J., Haeberli P., Smithies O. A comprehensive set of sequence analysis programs for the vax. Nucleic Acids Research 1984; 12: 387–395
  • Edman J.C., Kovacs J.A., Masur H., Santi D.V., Elwood H.J., Sogin M.L. Ribosomal RNA sequence shows Pneumocystis carinii to be a member of the fungi. Nature 1988; 334: 519–522
  • Ellis D.H. Cryptococcus neoformans var. gattii in Australia. Journal of Clinical Microbiology 1987; 25: 430–431
  • Ellis D.H., Pefiffer T.F. Natural habitat of Cryptococcus neoformans var. gattii. Journal of Clinical Microbiology 1990; 28: 1642–1644
  • Erlich H.A., Gelfand D., Sninsky J.J. Recent advances in the polymerase chain reaction. Science 1991; 252: 1643–1651
  • Faith D.P., Cranston P.S. Could a cladogram this short have arisen by chance alone?: On permutation tests for cladistic structure. Cladistics 1991; 7: 1–28
  • Farris J.S. The retention index and the rescaled consistency index. Cladistics 1989; 5: 417–419
  • Felsenstein J. Numerical methods for inferring evolutionary trees. Quarterly Review of Biology 1982; 57: 379–404
  • Gueho E., Kurtzman C.P., Peterson S.W. Evolutionary affinities of heterobasidiomycetous yeasts estimated from 18S and 25S ribosomal RNA sequence divergence. Systematic and Applied Microbiology 1989; 12: 230–236
  • Gueho E., Kurtzman C.P., Peterson S.W. Phylogenetic relationships among species of Sterigmatomyces and Fellomyces as determined from partial rRNA sequences. International Journal of Systematic Bacteriology 1990; 40: 60–65
  • Gutell R.R. Comparative studies of RNA: inferring higher-order structure from patterns of sequence variation. Current Opinion in Structural Biology 1993; 3: 313–322
  • Gutell R.R. Collection of small subunit (16S-like and 16S-like) ribosomal RNA structures. Nucleic Acids Research 1993; 21: 3051–3054
  • Gutell R.R., Gray M.W., Schnare M.N. A compilation of large subunit (23S-like and 23S-like) ribosomal RNA structures: 1993. Nucleic Acids Research 1993; 21: 3055–3074
  • Gutell R.R., Power A., Hertz G.Z., Putz E.J., Stormo G.D. Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods. Nucleic Acids Research 1992; 20: 5785–5795
  • Ikeda R., Shinoda T., Fukazawa Y., Kaufman L. Antigenic characterization of Cryptococcus neoformans serotypes and its application to serotyping of clinical isolates. Journal of Clinical Microbiology 1982; 16: 22–29
  • Kwon-Chung K.J. A new genus Filobasidiella, the perfect state of Cryptococcus neoformans. Mycologia 1975; 67: 1197–1200
  • Kwon-Chung K.J. A new species of Filobasidiella, the sexual state of Cryptococcus neoformans B and C serotypes. Mycologia 1976; 68: 943–946
  • Kown-Chung K.J., Bennett J.E. Epidemiologic differences between the two varieties of Cryptococcus neoformans. American Journal of Epidemiology 1984; 120: 123–130
  • Kown-Chung K.J., Bennett J.E. Cryptococcosis. Medical Mycology, K.J. Kwon-Chung, J.E. Bennett. Lea & Febiger, Philadelphia, PA 1992; 397–446, In
  • Kwon-Chung K.J., Bennett J.E., Rhodes J.C. Taxonomic studies on Filobasidiella species and their anamorphs. Antonie van Leeuwenhoek 1982; 48: 25–38
  • Kwon-Chung K.J., Polacheck I., Bennett J.E. Improved diagnostic medium for separation of Cryptococcus neoformans var. neoformans (serotype A and serotype D) and Cryptococcus neoformans var. gattii (serotype B and serotype C). Journal of Clinical Microbiology 1992; 15: 535–537
  • Kwon-Chung K.J., Wickes B.L., Stockman L., Roberts G.D., Ellis D., Howard D.H. Virulence, serotype, and molecular characteristics of environmental strains of Cryptococcus neoformans var. gattii. Infection and Immunity 1992; 60: 1869–1874
  • Levitz S.M. The ecology of Cryptococcus neformans and the epidemiology of cryptococcosis. Reviews of Infectious Diseases 1991; 13: 1163–1169
  • Liuk Y., Rocourt M., Pan S.H., Liu C.T., Leibowitz M.J. Sequence and variability of the 5.8S and 26S ribosomal RNA genes of Pneumocystis carinii. Nucleic Acids Research 1992; 20: 3763–3772
  • Magee B.B., D'Souza T.M., Magee P.T. Strain and species identification by restriction fragment length polymorphisms in the ribosomal DNA repeat of Candida species. Journal of Bacteriology 1987; 169: 1639–1643
  • McManus E.J., Jones J.M. Detection of a Trichosporon beigelii antigen cross-reactive with Cryptococcus neoformans capsular polysaccharide in serum from a patient with disseminated Trichosporon infection. Journal of Clinical Microbiology 1985; 21: 681–685
  • Medlin L., Elwood H.J., Stickel S., Sogin M.L. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 1988; 71: 491–499
  • Mercure S., Rougeau N., Montplaisir S., Lemay G. The nucleotide sequence of the 25S ribosomal RNA-encoding gene from Candida albicans. Nucleic Acids Research 1993; 21: 1490–1490
  • Mitchell T.G., White T.J., Taylor J.W. Comparison of 5.8S ribosomal DNA sequences among the basidiomycetous yeast genera Cystofilobasidium, Filobasidium and Filobasidiella. Journal of Medical and Veterinary Mycology 1992; 30: 207–218
  • Neefs J-M, van de Peer Y., de Rijk P., Chapelle S., de Wachter R. Compilation of small ribosomal subunit RNA structures. Nucleic Acids Research 1993; 21: 3025–3049
  • Olsen G.J., Overbeek R., Larsen N., Marsh T.L., McCaughey M.J., Maciukenas M., Kuan W-M., Macke T.J., Xing Y.Q., Woese C.R. The ribosomal database project. Nucleic Acids Research 1992; 20: S2199–2200
  • Perfect J.R. Cryptococcosis. Infectious Disease Clinics of North America 1989; 3: 77–102
  • Perfect J.R., Magee B.B., Magee P.T. Separation of chromosomes of Cryptococcus neoformans by pulsed field gel electrophoresis. Infection and Immunity 1989; 57: 2624–2627
  • Polacheck I., Kwon-Chung K.J. Creatinine metabolism in Cryptococcus neoformans and Cyptococcus bacillisporus. Journal of Bacteriology 1980; 142: 15–20
  • Polacheck I., Lebens G., Hicks J.B. Development of DNA probes for early diagnosis and epidemiologic study of cryptococcosis in AIDS patients. Journal of Clinical Microbiology 1992; 30: 925–930
  • Resterepo B.I., Barbour A.G. Cloning of the 18S and 25S rDNAs from the pathogenic fungus Cryptococcus neoformans. Journal of Bacteriology 1989; 171: 5596–5600
  • Salkin I.F., Hurd N.J. New medium for differentiation of Cryptococcus neoformans serotype pairs. Journal of Clinical Microbiology 1982; 15: 169–171
  • Spitzer E.D., Spitzer S.G. Use of a dispersed repetitive DNA element to distinguish clinical isolates of Cryptococcus neoformans. Journal of Clinical Microbiology 1992; 30: 1094–1097
  • Spitzer E.D., Spitzer S.G., Freundlich L.F., Casadevall A. Persistance of initial infection in recurrent Cryptococcus neoformans meningitis. Lancet 1993; 241: 595–596
  • Spreadbury C.L., Bainbridge B.W., Cohen J. Restriction fragment length polymorphisms in isolates of Aspergillus fumigatus probed with part of the intergenic spacer region from the ribosomal RNA gene complex of Aspergillus nidulans. Journal of General Microbiology 1990; 136: 1991–1994
  • van de Peer Y., Hendricks L., Goris A., Neefs J-M., Vancanneyt M., Kersters K., Berny J-F., Hennebert G.L., de Wachter R. Evolution of basidiomycetous yeasts as deduced from small ribosomal subunit RNA sequences. Systematic and Applied Microbiology 1992; 15: 250–258
  • van Heerikhuizen H., Ykema A., Klootwijk J., Gaillardin C., Ballas C., Fournier P. Heterogeneity in the ribosomal RNA genes of the yeast Yarrowia lipolytica; cloning and analysis of two size classes of repeats. Gene 1985; 39: 213–222
  • Varma A., Kwon-Chung K.J. Restriction fragment polymorphism in mitochondrial DNA of Cryptococcus neoformans. Journal of General Microbiology 1989; 135: 3353–3362
  • Vilgalys R., Hester M. Rapid genetic amplification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology 1990; 172: 4238–4246
  • Wainwright P.O., Hinkle G., Sogin M.L., Stickel S.K. Monophyletic origins of the metazoa: an evolutionary link with fungi. Science 1993; 260: 340–342
  • Washburn R.G., Bryant-Varela B.J., Julian N.C., Bennett J.E. Differences in Cryptococcus neoformans capsular polysaccharide structure influence assembly of alternative complement pathway C3 convertase on fungal surfaces. Molecular Immunology 1991; 28: 465–470
  • Wilson D.E., Bennett J.E., Bailey J.W. Serologic grouping of Cryptococcus neoformans. Proceedings of the Society for Experimental Biology and Medicine 1968; 127: 820–823
  • Woese C.R. Bacterial evolution. Microbiological Reviews 1987; 51: 221–271
  • Woese C.R., Gutell R., Gupta R., Noller H.F. Detailed analysis of the higher-order structure of 16S-like ribosomal ribonucleic acids. Microbiological Reviews 1983; 47: 621–669
  • Yamada Y., Nagahama T., Kawasaki H., Banno I. Significance of the coenzyme Q-system in the classification of yeast and yeast-like organisms. 36. The phylogenetic relationship of the genera Phaffia Miller, Yoneyama et Soneda and Cryptococcus Kutzing Emend. Phaff et Spencer (Cryptococcaceae) based on the partial sequences of 18S and 26S ribosomal ribonucleic acids. Journal of General and Applied Microbiology 1990; 36: 403–414
  • Zuger A., Louie E., Holzman R.S., Simberkoff M.S., Rahal J.J. Cryptococcal disease in patients with the acquired immunodeficiency syndrome: diagnostic features and outcome of treatment. Annals of Internal Medicine 1986; 104: 234–240

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