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Original Articles

An investigation into the morphology and genetics of Cyclotella comensis and closely related taxa

, , , , &
Pages 423-440 | Received 12 Sep 2013, Accepted 11 Mar 2014, Published online: 05 Jun 2014

References

  • Alverson A.J. 2008. Molecular systematics and the diatom species. Protist 159: 339–353. doi: 10.1016/j.protis.2008.04.001
  • Amato A., Kooistra W.H., Levialdi Ghiron J.H., Mann D.G., Pröschold T. & Montresor M. 2007. Reproductive isolation among sympatric cryptic species in Marine Diatoms. Protist 158: 193–207. doi: 10.1016/j.protis.2006.10.001
  • Armbrust E.V. & Galindo H.M. 2001. Rapid evolution of a sexual reproduction gene in centric diatoms of the genus Thalassiosira. Applied and Environmental Microbiology 67: 3501–3513. doi: 10.1128/AEM.67.8.3501-3513.2001
  • Behnke A., Friedl T., Chepurnov V.A. & Mann D.G. 2004. Reproductive compatibility and rDNA sequence analyses in the Sellaphora pupula species complex (Bacillariophyta). Journal of Phycology 40: 193–208. doi: 10.1046/j.1529-8817.2004.03037.x
  • Beszteri B. 2005. Morphometric and molecular investigations of species limits in Cyclotella meneghiniana (Bacillariophyceae) and closely related species. Ph.D. Thesis, University of Bremen, Bremen.
  • Dreßler M. & Hübener T. 2006. Morphology and ecology of Cyclostephanos delicatus (Genkal) Casper & Scheffler (Bacillariophyceae) in comparison with C. tholiformis Stoermer, Hakansson & Theriot. Nova Hedwigia 82: 409–434. doi: 10.1127/0029-5035/2006/0082-0409
  • Evans K.M., Wortley A.H. & Mann D.G. 2007. An assessment of potential diatom ‘barcode’ genes (cox1, rbcL, 18S and ITS rDNA) and their effectiveness in determining relationships in Sellaphora (Bacillariophyta). Protist 158: 349–364. doi: 10.1016/j.protis.2007.04.001
  • Evans K.M., Wortley A.H., Simpson G.E., Chepurnov V.A. & Mann D.G. 2008. A molecular systematic approach to explore diversity within the Sellaphora pupula species complex (Bacillariophyta). Journal of Phycology 44: 215–231. doi: 10.1111/j.1529-8817.2007.00454.x
  • Fox M.G. & Sorhannus U. 2003. RpoA: A useful gene for phylogenetic analysis in diatoms. Journal of Eukaryotic Microbiology 50: 471–475. doi: 10.1111/j.1550-7408.2003.tb00273.x
  • Genkal S.I. 1977. K metodike podschota nekotorih taksonomicheski znachimih strukturnih elementov stvorki u diatomovih vodoroslej sem. Thalassiosiraceae Lebour emend Hasle (Bacillariophyta). Botanicheskii Zhurnal 62: 848–851.
  • Godhe A., McQuoid M.R., Karunasagar In., Karunasagar Id. & Rehnstam-Holm A.S. 2006. Comparison of three common molecular tools for distinguishing among geographically separated clones of the diatom Skeletonema marinoi Sarno et Zingone (Bacillariophyceae). Journal of Phycology 42: 280–291. doi: 10.1111/j.1529-8817.2006.00197.x
  • Grunow A. 1882. Cyclotella comensis. In: Synopsis des Diatomées de Belgique: Atlas (Ed. by H. van Heurck), pp. 78–103. Ducaju et Cie, Anvers.
  • Guillard R.R.L. & Ryther J.H. 1962. Studies of marine planktonic diatoms: I. Cyclotella nana Hustedt, and Detonula confervaceae (Cleve) Gran. Canadian Journal of Microbiology 8: 229–239. doi: 10.1139/m62-029
  • Håkansson H. 1990. Cyclotella tripartita nov. spec. and the relationship to similar taxa. In: Ouvrage dédié à la mémoire du professeur Henry Germain (1903–1989) (Ed. by M. Ricard), pp. 75–82. Koeltz scientific books, Koenigstein.
  • Hall T. 2011. BioEdit: biological sequence alignment editor. Ibis Biosciences, Carlsbad, California.
  • Hamsher S.E., Evans K.M., Mann D.G., Poulíčková A. & Saunders G.W. 2011. Barcoding diatoms: Exploring alternatives to COI-5P. Protist 162: 405–422. doi: 10.1016/j.protis.2010.09.005
  • Hegewald E., Padisák J. & Friedl T. 2007. Pseudotetraedriella kamillae: taxonomy and ecology of a new member of the algal class Eustigmatophyceae (Stramenopiles). Hydrobiologia 586: 107–116.
  • Hollingsworth P.M., Forrest L.L., Spouge J.L., Hajibabaei M., & Ratnasingham S. et al. 2009. CBOL plant working group: A DNA barcode for land plants. Proceedings of the National Academy of Sciences of the United States of America 106: 12794–12797. doi: 10.1073/pnas.0905845106
  • Houk V., Klee R. & Tanaka H. 2010. Atlas of freshwater centric diatoms with a brief key and descriptions part III. Stephanodiscaceae A: Cyclotella, Tertiarius, Discostella. In: Fottea 10 Supplement (Ed. by A. Poulíčková), Palacky University Press, Olomouc. 498 pp.
  • Hustedt F. 1930. Die Kieselalgen Deutschlands, Österreichs und der Schweiz unter Berücksichtigung der übrigen Länder Europas sowie der angrenzenden Meeresgebiete. In: Dr. L. Rabenhorst's Kryptogamenflora von Deutschland, Österreich und Schweiz (Ed. by L. Rabenhorst), Akademische Verlagsgesellschaft, Leipzig, pp. 352–354.
  • Iwatani N., Murakami S. & Suzuki Y. 2005. A sequencing protocol of some DNA regions in nuclear, chloroplastic and mitochondrial genomes with an individual colony of Thalassiosira nordenskioeldii Cleve (Bacillariophyceae). Polar Biosciences 18: 35–45.
  • Klee R. & Steinberg C.E.W. 1987. Kieselalgen bayrischer Gewässer. Loseblattsammlung Bayrisches Landesamt für Wasserwirtschaft 3.2.5/1–3.2.5/6.
  • Krammer K. & Lange-Bertalot H. 1991. Bacillariophyceae 3. Teil: Centrales Fragilariaceae Eunotiaceae. In: Süsswasserflora von Mitteleuropa (Ed. by H. Ettl, J. Gerloff, H. Heynig & D. Mollenhauer), Vol. 2/3. G. Fischer, Stuttgart & New York, pp. 53–54, 334.
  • Kress W.J., Wurdack K.J., Zimmer E.A., Weigt L.A. & Janzen D.H. 2005. Use of DNA barcodes to identify flowering plants. Proceedings of the National Academy of Sciences of the United States of America 102: 8369–8374. doi: 10.1073/pnas.0503123102
  • Lee M.A., Faria D.G., Han M.S., Lee J., Ki J.S. 2013. Evaluation of nuclear ribosomal RNA and chloroplast gene markers for the DNA taxonomy of centric diatoms. Biochemical Systematics and Ecology 50: 163–174. doi: 10.1016/j.bse.2013.03.025
  • Liu Y., Yan H.F., Cao T. & Ge X.J. 2010. Evaluation of 10 plant barcodes in Bryophyta (mosses). Journal of Systematics and Evolution 48: 36–46. doi: 10.1111/j.1759-6831.2009.00063.x
  • Luddington I.A., Kaczmarska I. & Lovejoy C. 2012. Distance and character-based evaluation of the V4 region of the 18S rRNA gene for the identification of diatoms (Bacillariophyceae). PLoS ONE 7(9): e45664. doi: 10.1371/journal.pone.0045664
  • MacGillivary M.L. & Kaczmarska I. 2011. Survey of the efficacy of a short fragment of the rbcL gene as a supplemental DNA barcode for diatoms. Journal of Eukaryotic Microbiology 58: 529–536. doi: 10.1111/j.1550-7408.2011.00585.x
  • Mayr E. 1963. Animal and Species Evolution. Belknap Press, Cambridge, Mass. xiv + 797 pp.
  • Meister F. 1912. Die Kieselalgen der Schweiz. Beiträge zur Kryptogamenflora der Schweiz 4: 1–254.
  • Moniz M.B.J. & Kaczmarska I. 2009. Barcoding diatoms: is there a good marker? Molecular Ecology Resources 9: 65–74. doi: 10.1111/j.1755-0998.2009.02633.x
  • Moniz M.B.J. & Kaczmarska I. 2010. Barcoding of diatoms: Nuclear encoded ITS revisited. Protist 161: 7–34. doi: 10.1016/j.protis.2009.07.001
  • Padisák J., Hajnal È., Krienitz L., Lakner J. & Üveges V. 2010. Rarity, ecological memory, rate of floral change in phytoplankton – and the mystery of the Red Cock. Hydrobiologia 653: 45–64. doi: 10.1007/s10750-010-0344-2
  • Rott E., Pall K., Schneider S. & Jäger D. 2007. Interessante Characeen-Funde aus Nord-Tirol. Ergebnisse einer Tagung, Innsbruck.
  • Sanger F., Donelson J.E., Coulson A.E., Kössel H. & Fischer D. 1974. Determination of a nucleotide sequence in bacteriophage f1 DNA by primed synthesis with DNA polymerase. Journal of Molecular Biology 90: 315–333. doi: 10.1016/0022-2836(74)90376-3
  • Saunders G.W. & McDevit D.C. 2012. Methods for DNA barcoding photosynthetic protists emphasizing the macroalgae and diatoms. In: DNA barcodes: methods and protocols (Ed. by W.J. Kress & D.L. Erickson), pp. 207–222. Humana Press, New York.
  • Scheffler W. 1994. Cyclotella pseudocomensis nov. spec. (Bacillariophyceae) aus norddeutschen Seen. Diatom Research 9: 355–369. doi: 10.1080/0269249X.1994.9705313
  • Scheffler W. & Morabito G. 2003. Topical observations on centric diatoms (Bacillariophyceae, Centrales) of Lake Como (n. Italy). Journal of Limnology 62: 47–62. doi: 10.4081/jlimnol.2003.47
  • Scheffler W., Nicklisch A. & Schönfelder I. 2005. Beiträge zur Morphologie, Ökologie und Ontogenie der planktischen Diatomee Cyclotella comensis Grunow: Untersuchungen an historischem und rezentem Material. Diatom Research 20: 171–200.
  • Schmidt A., Schmidt M.F.F., Heiden H., Müller O. & Hustedt F. 1900. Atlas zur Diatomaceenkunde. Aschersleben-Leipzig.
  • Sorvari S. & Korhola A. 1998. Recent diatom assemblage changes in subarctic Lake Saanajärvi, NW Finnish Lapland, and their paleoenvironmental implications. Journal of Paleolimnology 20: 205–215. doi: 10.1023/A:1007953515620
  • Straub F. 1987. A propos de Cyclotella comensis Grunow (Bacillariophyceae). Cahiers de Biologie Marine 28: 319–322.
  • Ter Braak C.J.F. & Smilauer P. 2003. Canoco for Windows. Plant Research International, Wageningen, The Netherlands.
  • Theriot E., Fritz S.C., Whitlock C. & Conley D.J. 2006. Late Quaternary rapid morphological evolution of an endemic diatom in Yellowstone Lake, Wyoming. Paleobiology 32(1): 38–54. doi: 10.1666/02075.1
  • Theriot E. & Serieyssol K. 1994. Phylogenetic systematics as a guide to understanding features and potential morphological characters of the centric diatom family Thalassiosiraceae. Diatom Research 9: 429–450. doi: 10.1080/0269249X.1994.9705318
  • Trobajo R., Mann D.G., Clavero E., Evans K.M., Vanormelingen P. & McGregor R.C. 2010. The use of partial cox1, rbcL and LSU rDNA sequences for phylogenetics and species identification within the Nitzschia palea species complex (Bacillariophyceae). European Journal of Phycology 45: 413–425. doi: 10.1080/09670262.2010.498586
  • Voigt R., Grüger E., Baier J. & Meischner D. 2008. Seasonal variability of Holocene climate: a palaeolimnological study on varved sediments in Lake Jues (Harz Mountains, Germany). Journal of Paleolimnology 40: 1021– 1052.
  • Wawrik B., Paul J.H. & Tabita F.R. 2002. Real-time PCR quantification of rbcL (ribulose-1,5-bisphosphate carboxylase/oxygenase) mRNA in diatoms and pelagophytes. Applied and Environmental Microbiology 68: 3771–3779. doi: 10.1128/AEM.68.8.3771-3779.2002
  • Werner P. & Smol J.P. 2006. The distribution of the diatom Cyclotella comensis in Ontario (Canada) lakes. Nova Hedwigia 130: 373–391.
  • White T.J., Bruns T.D., Lee S.B. & Taylor J.W. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: A guide to methods and applications (Ed. by M.A. Innis, D.H. Gelfand, J.J. Sninsky & T.J. White), pp. 315–322. Academic Press, London.
  • Zimmermann J., Jahn R. & Gemeinholzer B. 2011. Barcoding diatoms: Evaluation of the V4 subregion on the 18S rRNA gene, including new primers and protocols. Organisms Diversity & Evolution 11: 173–192. doi: 10.1007/s13127-011-0050-6

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