Taxonomy and molecular phylogeny of three marine benthic species of Haslea (Bacillariophyceae), with transfer of two species to Navicula

References

• Alverson A.J., Jansen R.K. & Theriot E.C. 2007. Bridging the rubicon: phylogenetic analysis reveals repeated colonizations of marine and fresh waters by thalassiosiroid diatoms. Molecular Phylogenetics and Evolution 45: 193–210. doi: 10.1016/j.ympev.2007.03.024
   PubMed Web of Science ®Google Scholar
• Anonymous. 1975. Proposals for a standardization of diatom terminology and diagnoses. Nova Hedwigia, Beiheft 53: 323–354.
   Google Scholar
• Bruder K. & Medlin L.K. 2008. Morphological and molecular investigations of naviculoid diatoms. III. Hippodonta and Navicula s.s. Diatom Research 23: 331–347. doi: 10.1080/0269249X.2008.9705760
   Web of Science ®Google Scholar
• Cox E.J. 1979. Symmetry and valve structure in naviculoid diatoms. Nova Hedwigia 64: 193–206.
   Google Scholar
• Cox E.J. 1999. Studies on the diatom genus Navicula Bory. VIII. Variation in valve morphology in relation to the generic diagnosis based on Navicula tripunctata (O.F. Müller) Bory. Diatom Research 14: 207–237. doi: 10.1080/0269249X.1999.9705467
   Google Scholar
• Cox E.J. 2012. Ontogeny, homology, and terminology–wall morphogenesis as an aid to character recognition and character state definition for pennate diatom systematics. Journal of Phycology 48: 1–31. doi: 10.1111/j.1529-8817.2011.01081.x
   PubMed Web of Science ®Google Scholar
• Cox E.J. & Ross R. 1980. The striae of pennate diatoms. In Proceedings of the sixth symposium on recent and fossil diatoms (Ed. by R. Ross), pp. 267–278. Otto Koetz Science Publishers, Königstein.
   Google Scholar
• Darriba D., Taboada G.L., Doallo R. & Posada D. 2012. Jmodeltest 2: more models, new heuristics and parallel computing. Nature Methods 9: 772. doi: 10.1038/nmeth.2109
   PubMed Web of Science ®Google Scholar
• Droop S.J.M. 1994. Morphological variation in Diploneis smithii and D. fusca (Bacillariophyceae). Archiv für Protistenkunde 144: 249–270. doi: 10.1016/S0003-9365(11)80137-5
   Google Scholar
• Edgar S.M. & Theriot E.C. 2004. Phylogeny of Aulacoseira (Bacillariophyta) based on molecules and morphology 1. Journal of Phycology 40: 772–788. doi: 10.1111/j.1529-8817.2004.03126.x
   Web of Science ®Google Scholar
• Gastineau R., Davidovich N.A., Bardeau J.-F., Caruso A., Leignel V., Hardivillier Y., Jacquette B., Davidovich O.I., Rince Y., Gaudin P., Cox E.J. & Mouget J.-L. 2012. Haslea karadagensis (Bacillariophyta): a second blue diatom, recorded from the Black Sea and producing a novel blue pigment. European Journal of Phycology 47: 469–479. doi: 10.1080/09670262.2012.741713
   Web of Science ®Google Scholar
• Gastineau R., Davidovich N.A., Hansen G., Rines J., Wul A., Kaczmarska I., Ehrman J., Hermann D., Maumus F., Hardivillier Y., Leignel V., Jacquette B., Méléder V., Hallegrae G., Yallop M., Perkins R., Cadoret J.-P., Saint-Jean B., Carrier G. & Mouget J.-L. 2014. Haslea ostrearia-like diatoms: biodiversity out of the blue. In: Advances in botanical research (Ed. by J.-P. Jacquot, P. Gadal & N. Bourgougnon), Vol. 71, pp. 441–446. Academic Press, Elsevier Ltd, London.
   Google Scholar
• Gastineau R., Hansen G., Davidovich N.A., Davidovich O.I., Bardeau J.-F., Kaczmarska I., Ehrman J.M., Leignel V., Hardivillier Y., Jacquette B., Poulin M., Morancais M., Fleurence J. & Mouget J.-L. 2016. A new blue-pigmented hasleoid diatom, Haslea provincialis, from the Mediterranean Sea. European Journal of Phycology 51: 156–170. doi: 10.1080/09670262.2015.1110861
   Web of Science ®Google Scholar
• Guillard R.R.L. 1975. Culture of phytoplankton for feeding marine invertebrates. In: Culture of marine invertebrate animals (Ed. by W.L. Smith & M.H. Chanley), pp. 29–60. Springer, Boston, MA.
   Google Scholar
• Hustedt F. 1961–1966. Die Kieselalgen Deutschlands, Österreichs und der Schweiz mit Berücksichtigung der übrigen Länder Europas sowie der angrenzenden meeresgebeite. In: Kryptogamen-Flora von Deutschland, Österreich und der Schweiz (Ed. by L. Rabenhorst), Vol. Band VII. Teil 3. 816 pp. Akademische Verlagsgesellschaft, Leipzig.
   Google Scholar
• Katoh K. & Standley D.M. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772–780. doi: 10.1093/molbev/mst010
   PubMed Web of Science ®Google Scholar
• Lanfear R., Frandsen P. B., Wright A.M., Senfeld T., & Calcott B. 2016. Partitionfinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and Evolution 34: 772–773.
   Web of Science ®Google Scholar
• Maddison W.P. & Maddison D.R. 2017. Mesquite: a modular system for evolutionary analysis. Version 3.2. Available from: http://mesquiteproject.org. [Accessed 18 January 2017].
   Google Scholar
• Massé G., Rince Y., Cox E.J., Allard G., Belt S.T. & Rowland S.J. 2001. Haslea salstonica sp. nov. and Haslea pseudostrearia sp. nov. (Bacillariophyta), two new epibenthic diatoms from the Kingsbridge estuary, United Kingdom. Comptes Rendus de l’ Academie des Sciences, Serie III-Sciences de la Vie Life Sciences 324: 617–626. doi: 10.1016/S0764-4469(01)01330-0
   PubMed Web of Science ®Google Scholar
• Medlin L., Elwood H.J., Stickel S. & Sogin M.L. 1988. The characterization of enzymatically amplified eukaryotic 16S-like rRNA-coding regions. Gene 71: 491–499. doi: 10.1016/0378-1119(88)90066-2
   PubMed Web of Science ®Google Scholar
• Nagumo T. & Kobayasi H. 1990. The bleaching method for gently loosening and cleaning a single diatom frustule. Diatoms 5: 45–50.
   Google Scholar
• Page R.D.M. 1996. TREEVIEW: An application to view phylogenetic trees on personal computers. Computer Applications in the Biosciences 12: 357–358.
   PubMedGoogle Scholar
• Potapova M. 2009. Navicula tripunctata. In Diatoms of the United States. Available from: http://westerndiatoms.colorado.edu/taxa/species/Navicula_tripunctata [Accessed 18 March 2017].
   Google Scholar
• Poulin M., Massé G., Belt S.T., Delavault P., Rousseau F., Robert J.M. & Rowland S.J. 2004. Morphological, biochemical and molecular evidence for the transfer of Gyrosigma nipkowii Meister to the genus Haslea (Bacillariophyta). European Journal of Phycology 39: 181–195. doi: 10.1080/0967026042000202136
   Web of Science ®Google Scholar
• Ronquist F. & Huelsenbeck J.P. 2003. Mrbayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (Oxford, England) 19: 1572–1574. doi: 10.1093/bioinformatics/btg180
   PubMed Web of Science ®Google Scholar
• Ross R., Cox E.J., Karayeva N.I., Mann D.G., Paddock T.B.B, Simonsen R. & Sims P.A. 1979. An amended terminology for the siliceous components of the diatom cell. Nova Hedwigia Beiheft 64: 513–533.
   Google Scholar
• Ruck E.C. & Theriot E.C. 2011. Origin and evolution of the canal raphe system in diatoms. Protist 162: 723–737. doi: 10.1016/j.protis.2011.02.003
   PubMed Web of Science ®Google Scholar
• Simonsen R. 1974. The diatom plankton of the Indian Ocean Expedition of R/V “Meteor” 1964–1965. “Meteor” Forschungsergebnisse Reihe D. Biologie 19: 1–107.
   Google Scholar
• Stamatakis A. 2014. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics (Oxford, England) 30: 1312–1313. doi: 10.1093/bioinformatics/btu033
   PubMed Web of Science ®Google Scholar
• Sterrenburg F.A.S., Hinz F., & Hargraves P.E. 2015a. A type study and emended description of Haslea wawrikae (Bacillariophyta). Phytotaxa 226: 188–192. doi: 10.11646/phytotaxa.226.2.8
   Web of Science ®Google Scholar
• Sterrenburg F.A.S., Tiffany M.A., Hinz F., Herwig W.E. & Hargraves P.E. 2015b. Seven new species expand the morphological spectrum of Haslea. A comparison with Gyrosigma and Pleurosigma (Bacillariophyta). Phytotaxa 207: 143–162. doi: 10.11646/phytotaxa.207.2.1
   Web of Science ®Google Scholar
• Talgatti D., Eugenia A.S. & Lezilda C.T. 2014. Haslea sigma (Naviculaceae, Bacillariophyta) a new sigmoid benthic species from salt marshes of southern Brazil. Phytotaxa 177: 231–238. doi: 10.11646/phytotaxa.177.4.4
   Web of Science ®Google Scholar
• Tamura K., Dudley J., Nei M. & Kumar S. 2007. MEGA 4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution 24: 1596–1599. doi: 10.1093/molbev/msm092
   PubMed Web of Science ®Google Scholar
• Warren D.L., Geneva A.J. and Lanfear R.. 2017. RWTY (R We There Yet): An R package for examining convergence of Bayesian phylogenetic analyses. Molecular Biology and Evolution 34:1016–1020.
   PubMed Web of Science ®Google Scholar
• Witkowski A., Lange-Bertalot H., Kociolek J.P. & Bak M. 2009. Diatom flora of San Francisco Bay and vicinity. I. New species in the genus Navicula Bory sensu stricto. Nova Hedwigia, Beiheft 135: 295–324.
   Google Scholar
• Witkowski A., Lange-bertalot H. & Stachura K. 1998. New and confused species in the genus Navicula (Bacillariophyceae) and the consequences of restrictive generic circumscription. Cryptogamie Algologie 19: 83–108.
   Web of Science ®Google Scholar