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Description of Pseudo-nitzschia cuspidata var. manzanillensis var. nov. (Bacillariophyceae): morphology and molecular characterization of a variety from the central Mexican pacific

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Pages 55-68 | Received 03 Jul 2017, Accepted 28 Dec 2017, Published online: 06 Feb 2018

References

  • Ajani P., Murray S., Hallegraeff G., Lundholm N., Gillings M., Brett S. & Armand L. 2013. The diatom genus Pseudo-nitzschia (Bacillariophyceae) in New South Wales, Australia: morphotaxonomy, molecular phylogeny, toxicity, and distribution. Journal of Phycology 49: 765–785. doi: 10.1111/jpy.12087
  • Almandoz G.O., Ferrario M.E., Ferreyra G.A., Schloss I.R., Esteves J.L. & Paparazzo F.E. 2007. The genus Pseudo-nitzschia (Bacillariophyceae) in continental shelf waters of Argentina (Southwestern Atlantic Ocean, 38–558S). Harmful Algae 6: 93–103. doi: 10.1016/j.hal.2006.07.003
  • Amato A. & Montresor M. 2008. Morphology, phylogeny, and sexual cycle of Pseudo-nitzschia mannii sp. nov. (Bacillariophyceae): a pseudo-cryptic species within the P. pseudodelicatissima complex. Phycologia 47: 487–497. doi: 10.2216/07-92.1
  • Amato A., Kooistra W.H.C.F., Levialdi Ghiron J.H., Mann D.G., Proschold T. & Montresor M. 2007. Reproductive isolation among sympatric cryptic species in marine diatoms. Protist 158: 193–207. doi: 10.1016/j.protis.2006.10.001
  • Bates S.S. 1998. Ecophysiology and metabolism of ASP toxin production. In: Physiological ecology of harmful algal blooms (Ed. by D.M. Anderson, A.D. Cembella & G.M. Hallegraeff), pp. 405–426. Springer-Verlag, Heidelberg.
  • Bates S.S., Garrison D.L. & Horner R.A. 1998. Bloom dynamics and physiology of domoic-acid-producing Pseudo-nitzschia species. In: Physiological ecology of harmfull algal blooms (Ed. by D.M. Anderson, A.D. Cembella & G.M. Hallegraeff), pp. 267–292. Springer-Verlag, Heidelberg.
  • Cabrales-Talavera G. 2010. Distribución espacial y temporal de diatomeas del género Pseudo-nitzschia spp. y concentración de ácido domoico en la región de la Bahía de Todos Santos, B.C., México, Master, Centro de Investigación Científica y de Educación Superior de Ensenada. 88 pp.
  • Caisová L., Marin B. & Melkonian M. 2011. A close-up view on ITS2 evolution and speciation-a case study in the Ulvophyceae (Chlorophyta, Viridiplantae). BMC Evolutionary Biology 11: e8249. doi: 10.1186/1471-2148-11-262
  • Casteleyn G., Chepurnov V.A., Leliaert F., Mann D.G., Bates S.S., Lundholm N., Rhodes L., Sabbe K. & Vyverman W. 2008. Pseudo-nitzschia pungens (Bacillariophyceae): a cosmopolitan diatom species? Harmful Algae 7: 241–257. doi: 10.1016/j.hal.2007.08.004
  • Casteleyn G., Adams N.G., Vanormelingen P., Debeer A.E., Sabbe K. & Vyverman W. 2009. Natural hybrids in the marine diatom Pseudo-nitzschia pungens (Bacillariophyceae): genetic and morphological evidence. Protist 160: 343–354. doi: 10.1016/j.protis.2008.11.002
  • Coleman A.W. 2009. Is there a molecular key to the level of “biological species” in eukaryotes? A DNA guide. Molecular Phylogenetics and Evolution 50: 197–203. doi: 10.1016/j.ympev.2008.10.008
  • D’Alelio D., Amato A., Kooistra W.H.C.F., Procaccini G., Casotti R. & Montresor M. 2009. Internal transcribed spacer polymorphism in Pseudo-nitzschia multistriata (Bacillariophyceae) in the Gulf of Naples: recent divergence or intraspecific hybridization? Protist 160: 9–20. doi: 10.1016/j.protis.2008.07.001
  • Dao H.V., Phan V.B., Teng S.T., Uchida H., Leaw C.P., Lim P.T., Suzuki T. & Pham K.X. 2015. Pseudo-nitzschia fukuyoi (Bacillariophyceae), a domoic acid-producing species from Nha Phu Bay, Khanh Hoa Province, Vietnam. Fisheries Science 81: 533–539. doi: 10.1007/s12562-015-0864-9
  • Darty K., Denise A. & Ponty Y. 2009. VARNA: interactive drawing and editing of the RNA secondary structure. Bioinformatics 25: 1974–1975. doi: 10.1093/bioinformatics/btp250
  • Doyle J.J. & Doyle J.L. 1990. Isolation of plant DNA from fresh tissue. Focus 12: 13–15.
  • Evans K.M., Wortley A.H. & Mann D.G. 2007. An assessment of potential diatom “Barcode” genes (cox1, rbcL, 18S and ITS rDNA) and their effectiveness in determining relationships in sellaphora (Bacillariophyta). Protist 158: 349–364. doi: 10.1016/j.protis.2007.04.001
  • Fire S.E., Wang Z., Berman M., Langlois G.W., Morton S.L., Sekula-Wood E. & Benitez-Nelson C.R. 2010. Trophic transfer of the harmful algal toxin domoic acid as a cause of death in a minke whale (Balaenoptera acutorostrata) stranding in Southern California. Aquatic Mammals 36: 342–350. doi: 10.1578/AM.36.4.2010.342
  • Galicia M.A. 1987. Modelación hidrodinámica numérica de las bahías de Manzanillo y Santiago. Master, UNAM. 66 pp.
  • Galicia M. & Gaviño J.H. 1996. Estudio numérico de refracción de oleaje y circulación de la bahía de Manzanillo. GEOS 16: 256.
  • Gallagher J.C. 1982. Physiological variation and electrophoretic banding patterns of genetically different seasonal population of Skeletonema costatum (Bacillariophyceae). Journal of Phycology 18: 148–162. doi: 10.1111/j.1529-8817.1982.tb03169.x
  • Guillard R. & Hargraves P. 1993. Stichochrysis immobilis is a diatom, not a chrysophyte. Phycologia 32: 234–236. doi: 10.2216/i0031-8884-32-3-234.1
  • Hall T.A. 1999. Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95–98.
  • Hamsher S.E., Evans K.M., Mann D.G., Poulícková A. & Saunders G.W. 2011. Barcoding diatoms: exploring alternatives to COI-5P. Protist 162: 405–422. doi: 10.1016/j.protis.2010.09.005
  • Hernández-Becerril D.U. 1998. Species of the planktonic diatom genus Pseudo-nitzschia of the Pacific coasts of Mexico. Hydrobiologia 379: 77–84. doi: 10.1023/A:1003471828302
  • Jeffery B., Barlow T., Moizer K., Paul S. & Boyle C. 2004. Amnesic shellfish poison. Food and Chemical Toxicology 42: 545–557. doi: 10.1016/j.fct.2003.11.010
  • Koetschan C., Förster F., Keller A., Schleicher T., Ruderisch B., Schwarz R., Müller T., Wolf M. & Schultz J. 2010. The ITS2 database III – sequences and structures for phylogeny. Nucleic Acids Research 38: 275–279. doi: 10.1093/nar/gkp966
  • Koetschan C., Hackl T., Müller T., Wolf M., Förster F. & Schultz J. 2012. ITS2 database IV: interactive taxon sampling for internal transcribed spacer 2 based phylogenies. Molecular Phylogenetics and Evolution 63: 585–588. doi: 10.1016/j.ympev.2012.01.026
  • Levialdi Ghiron J.H., Amato A., Montresor M. & Kooistra W.H.C.F. 2008. Plastid inheritance in the planktonic raphid pennate diatom Pseudo-nitzschia delicatissima (Bacillariophyceae). Protist 159: 91–98. doi: 10.1016/j.protis.2007.06.002
  • Librado P. & Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451–1452. doi: 10.1093/bioinformatics/btp187
  • Licea S.S., Gómez-Aguirre S. & Moreno J.L. 2000. The occurrence of the diatom genus Pseudo-nitzschia Peragallo in Mexican coastal waters, 1979–2000. In: Proceedings of the16th international diatom symposium 2000 (Ed. by A. Economou-Amilli), p. 78. ISDR and University of Athens, Athens.
  • Lim H.-C., Leaw C.-P., Su S.N.-P., Teng S.-T., Usup G., Mohammad-Noor N., Lundholm N., Kotaki Y. & Lim P.-T. 2012a. Morphology and molecular characterization of Pseudo-nitzschia (Bacillariophyceae) from Malaysian Borneo, including the new species Pseudo-nitzschia circumpora sp. nov. Journal of Phycology 48: 1232–1247. doi: 10.1111/j.1529-8817.2012.01213.x
  • Lim H.-C., Lim P.-T., Su S.N.-P., Teng S.-T. & Leaw C.-P. 2012b. Genetic diversity of Pseudo-nitzschia brasiliana (Bacillariophyceae) from Malaysia. Journal of Applied Phycology 24: 1465–1475. doi: 10.1007/s10811-012-9803-7
  • Lim H.C., Teng S.T., Leaw C.P. & Lim P.T. 2013. Three novel species in the Pseudo-nitzschia pseudodelicatissima complex: P. batesiana sp. nov., P. lundholmiae sp. nov., and P. fukuyoi sp. nov.(Bacillariophyceae) from the Strait of Malacca, Malaysia. Journal of Phycology 49: 902–916.
  • Lundholm N., Bates S.S., Baugh K.A., Bill B.D., Connell L.B., Léger C. & Trainer V.L. 2012. Cryptic and pseudo-cryptic diversity in diatoms - with descriptions of Pseudo-nitzschia hasleana sp. nov. and P. fryxelliana sp. nov. Journal of Phycology 48: 436–454. doi: 10.1111/j.1529-8817.2012.01132.x
  • Lundholm N., Daugbjerg N. & Moestrup Ø. 2002a. Phylogeny of the Bacillariaceae with emphasis on the genus Pseudo-nitzschia (Bacillariophyceae) based on partial LSU rDNA. European Journal of Phycology 37: 115–134. doi: 10.1017/S096702620100347X
  • Lundholm N., Hansen P.J. & Kotaki Y. 2005. Lack of allelopathic effects of the domoic acid-producing marine diatom Pseudo-nitzschia multiseries. Marine Ecology Progress Series 288: 21–33. doi: 10.3354/meps288021
  • Lundholm N., Hasle G.R., Fryxell G.A. & Hargraves P.E. 2002b. Morphology, phylogeny and taxonomy of species within the Pseudo-nitzschia americana complex (Bacillariophyceae) with descriptions of two new species, Pseudo-nitzschia brasiliana and Pseudo-nitzschia linea. Phycologia 41: 480–497. doi: 10.2216/i0031-8884-41-5-480.1
  • Lundholm N., Moestrup Ø., Hasle G.R. & Hoef-Emden K. 2003. A study of the Pseudo-nitzschia pseudodelicatissima/cuspidata complex (Bacillariophyceae): what is P. pseudodelicatissima? Journal of Phycology 39: 797–813. doi: 10.1046/j.1529-8817.2003.02031.x
  • Lundholm N., Moestrup Ø., Kotaki Y., Hoef-Emden K. & Scholin C. 2006. Inter- and intraspecific variation of the Pseudo-nitzschia delicatissima complex (Bacillariophyceae) illustrated by rRNA probes, morphological data and phylogenetic analyses. Journal of Phycology 42: 464–481. doi: 10.1111/j.1529-8817.2006.00211.x
  • Mai J.C. & A.W. Coleman 1997. The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants. Journal of Molecular Evolution 44: 258–271. doi: 10.1007/PL00006143
  • Moniz M.B.J. & Kaczmarska I. 2010. Barcoding of diatoms: nuclear encoded ITS revisited. Protist 161: 7–34. doi: 10.1016/j.protis.2009.07.001
  • Mos L. 2001. Domoic acid: a fascinating marine toxin. Environmental Toxicology and Pharmacology 9: 79–85. doi: 10.1016/S1382-6689(00)00065-X
  • Moschandreou K., Papaefthimiou D., Katikou P., Kalopesa E., Panou A. & Nikolaidis G. 2010. Morphology, phylogeny and toxin analysis of Pseudo-nitzschia pseudodelicatissima (Bacillariophyceae) isolated from the Thermaikos Gulf, Greece. Phycologia 49: 260–273. doi: 10.2216/PH09-42.1
  • Moschandreou K.K., Baxevanis A.D., Katikou P., Papaefthimiou D., Nikolaidis G. & Abatzopoulos T.J. 2012. Inter- and intra-specific diversity of Pseudo-nitzschia (Bacillariophyceae) in the Northeastern Mediterranean. European Journal of Phycology 47: 321–339. doi: 10.1080/09670262.2012.713998
  • Orive E., Laza-Martinez A., Seoane S. & Alonso A. 2010. Diversity of Pseudo-nitzschia in the Southeastern Bay of Biscay. Diatom Research 25: 125–145. doi: 10.1080/0269249X.2010.9705834
  • Orive E., Pérez-Aicua L., David H., García-Etxebarria K., Laza-Martínez A., Seoane S. & Miguel I. 2013. The genus Pseudo-nitzschia (Bacillariophyceae) in a temperate estuary with description of two new species: Pseudo-nitzschia plurisecta sp. nov. and Pseudo-nitzschia abrensis sp. nov. Journal of Phycology 49: 1192–1206. doi: 10.1111/jpy.12130
  • Parsons M.L., Scholin C.A., Miller P.E., Doucette G.J., Powell C.L., Fryxell G.A., Dortch Q. & Soniat T.M. 1999. Pseudo-nitzschia species (Bacillariophyceae) in Louisiana coastal waters: molecular probe field trials, genetic variability, and domoic acid analyses. Journal of Phycology 35: 1368–1378. doi: 10.1046/j.1529-8817.1999.3561368.x
  • Percopo I., Ruggiero M.V., Balzano S., Gourvil P., Lundholm N., Siano R., Tammilehto A., Vaulot D. & Sarno D. 2016. Pseudo-nitzschia arctica sp. nov., a new cold-water cryptic Pseudo-nitzschia species within the P. pseudodelicatissima complex. Journal of Phycology 52: 184–199. doi: 10.1111/jpy.12395
  • Quijano-Scheggia S.I., Garcés E., Lundholm N., Moestrup Ø., Andree K. & Camp J. 2009. Morphology, physiology, molecular phylogeny and sexual compatibility of the cryptic Pseudo-nitzschia delicatissima complex (Bacillariophyta), including the description of P. arenysensis sp. nov. Phycologia 48: 492–509. doi: 10.2216/08-21.1
  • Quijano-Scheggia S., Rivera-Vilarelle M., Garcés E., Olivos-Ortiz A., Gaviño-Rodríguez J.H., Zepeda-Borja K., Galicia-Pérez M.A. & Patiño-Barragán M. 2010. Seasonal diversity of Pseudo-nitzschia spp. in the central zone of the Mexican Tropical Pacific, Manzanillo, Colima. In: 14th international conference on harmful Algae (Ed. by K. Pagou & G. Hallegraeff), p. 49. International Society for the Study of Harmful Algae and Intergovernmental Oceanographic Commission of UNESCO 2012, Hersonisson.
  • Quijano-Scheggia S., Olivos-Ortiz A., Gaviño-Rodríguez J.H., Castro-Ochoa F., Rivera-Vilarelle M., Galicia-Pérez M. & Patiño-Barragan M. 2011. First report of Pseudo-nitzschia brasiliana and P. micropora (Bacillariophycea) found in Cuyutlan Lagoon, Mexico. Revista de Biología Marina y Oceanografía 46: 189–197. doi: 10.4067/S0718-19572011000200008
  • Quilliam M.A. 2003. Chemical methods for domoic acid, the amnesic shellfish poisoning (ASP) toxin. In: Manual on harmful marine microalgae, monographs on oceanographic methodology (Ed. by G.M. Hallegraeff, D.M. Anderson & A.D. Cembella), pp. 247–266. Manual on Harmful Marine Microalgae, Monographs on Oceanography Methodology Intergovernmental Oceanographic Commission, UNESCO, Paris.
  • Rivera-Vilarelle M., Quijano-Scheggia S., Olivos-Ortiz A., Gaviño-Rodríguez J.H., Castro-Ochoa F. & Reyes-Herrera A. 2013. The genus Pseudo-nitzschia (Bacillariophyceae) in Manzanillo and Santiago Bays, Colima, Mexico. Botanica Marina 56: 357–373. doi: 10.1515/bot-2012-0176
  • Ronquist F. & Huelsenbeck J.P. 2003. Mrbayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (Oxford, England) 19: 1572–1574. doi: 10.1093/bioinformatics/btg180
  • Santiago-Morales I.S. 2011. Potencial tóxico de cepas de Pseudo-nitzschia aisladas de la costa occidental de Baja, California Doctorado, Centro de Investigación Científica y de Educación Superior de Ensenada. 124 pp.
  • Schultz J., Müller T., Achtziger M., Seibel P.N., Dandekar T. & Wolf M. 2006. The internal transcribed spacer 2 database – a web server for (not only) low level phylogenetic analyses. Nucleic Acids Research 34: W704–W707. doi: 10.1093/nar/gkl129
  • Secretaría de Marina 1973. Estudio geográfico de la región de Manzanillo, Colima. Secretaría de Marina, México.
  • Seibel P.N., Müller T., Dandekar T., Schultz J. & Wolf M. 2006. 4SALE -- A tool for synchronous RNA sequence and secondary structure alignment and editing. BMC Bioinformatics 7(1): 498. doi: 10.1186/1471-2105-7-498
  • Selig C., Wolf M., Müller T., Dandekar T. & Schultz J. 2008. The ITS2 database II: homology modelling RNA structure for molecular systematics. Nucleic Acids Research 36: 377–380. doi: 10.1093/nar/gkm827
  • Tamura K., Stecher G., Peterson D., Filipski A. & Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Molecular Biology and Evolution 30: 2725–2729. doi: 10.1093/molbev/mst197
  • Tan S.N., Lim H.C., Teng S.T., Lim P.T. & Leaw C.P. 2015. Pseudo-nitzschia species (Bacillariophyceae) identification and delineation using mitochondrial cox1 gene sequences as compared to LSU rDNA. Fisheries Science 81: 831–838. doi: 10.1007/s12562-015-0902-7
  • Teng S.T., Leaw C.P., Lim H.C. & Lim P.T. 2013. The genus Pseudo-nitzschia (Bacillariophyceae) in Malaysia, including new records and a key to species inferred from morphology-based phylogeny. Botanica Marina 56: 375–398. doi: 10.1515/bot-2012-0194
  • Teng S.T., Lim H.C., Lim P.T., Dao V.H., Bates S.S. & Leaw C.P. 2014. Pseudo-nitzschia kodamae sp. nov. (Bacillariophyceae), a toxigenic species from the Strait of Malacca, Malaysia. Harmful Algae 34: 17–28. doi: 10.1016/j.hal.2014.02.005
  • Teng S.T., Lim P.T., Lim H.C., Rivera-Vilarelle M., Quijano-Scheggia S., Takata Y., Quilliam M.A., Wolf M., Bates S.S. & Leaw C.P. 2015. A non-toxigenic but morphologically and phylogenetically distinct new species of Pseudo-nitzschia, P. sabit sp. nov. (Bacillariophyceae). Journal of Phycology 51: 706–725. doi: 10.1111/jpy.12313
  • Teng S.T., Tan S.N., Lim H.C., Dao V.H., Bates S.S. & Leaw C.P. 2016. High diversity of Pseudo-nitzschia along the northern coast of Sarawak (Malaysian Borneo), with descriptions of P. bipertita sp. nov. and P. limii sp. nov.(Bacillariophyceae). Journal of Phycology 52: 973–989. doi: 10.1111/jpy.12448
  • Thessen A.E., Bowers H.A. & Stoecker D.K. 2009. Intra- and interspecies differences in growth and toxicity of Pseudo-nitzschia while using different nitrogen sources. Harmful Algae 8: 792–810. doi: 10.1016/j.hal.2009.01.003
  • Trainer V.L., Bates S.S., Lundholm N., Thessen A.E., Cochlan W.P., Adams N.G. & Trick C.G. 2012. Pseudo-nitzschia physiological ecology, phylogeny, toxicity, monitoring and impacts on ecosystem health. Harmful Algae 14: 271–300. doi: 10.1016/j.hal.2011.10.025
  • Trainer V.L. & Bill B.D. 2004. Characterization of a domoic acid binding site from Pacific razor clam. Aquatic Toxicology 69: 125–132. doi: 10.1016/j.aquatox.2004.04.012
  • Trainer V.L., Hickey B.M., Lessard E.J., Cochlan W.P., Trick C.G., Wells M.L., Macfadyen A. & Moore S.K. 2009a. Variability of Pseudo-nitzschia and domoic acid in the Juan de Fuca eddy region and its adjacent shelves. Limnology and Oceanography 54: 289–308. doi: 10.4319/lo.2009.54.1.0289
  • Trainer V.L., Wells M.L., Cochlan W.P., Trick C.G., Bill B.D., Baugh K.A., Beall B.F., Herndon J. & Lundholm N. 2009b. An ecological study of a massive bloom of toxigenic Pseudo-nitzschia cuspidata off the Washington State coast. Limnology and Oceanography 54: 1461–1474. doi: 10.4319/lo.2009.54.5.1461
  • White T., Bruns T., Lee S. & Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: PCR protocols: a guide to methods and applications (Ed. by M. Innis, D. Gelfand, J. Shinsky & T. White), pp. 315–322. Academic Press, San Diego.
  • Wood A.M. & Leatham T. 1992. The species concept in phytoplankton ecology. Journal of Phycology 28: 723–729. doi: 10.1111/j.0022-3646.1992.00723.x
  • Zuker M. 2003. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research 31: 3406–3415. doi: 10.1093/nar/gkg595

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