Pollution profile of waterborne bacterial and fungal community in urban Rivers of Pearl River estuary: Microbial safety assessment

References

• Al Salah DMM, Ngweme GN, Laffite A, Otamonga J-P, Mulaji C, Poté J. 2020. Hospital wastewaters: A reservoir and source of clinically relevant bacteria and antibiotic resistant genes dissemination in urban river under tropical conditions. Ecotoxicol Environ Safety. 200:110767.
   PubMed Web of Science ®Google Scholar
• Chen L, Xiong Z, Sun L, Yang J, Jin Q. 2012. VFDB 2012 update: toward the genetic diversity and molecular evolution of bacterial virulence factors. Nucleic Acids Res. 40(Database issue):D641–D645.
   PubMed Web of Science ®Google Scholar
• Cui Q, Huang Y, Wang H, Fang T. 2019. Diversity and abundance of bacterial pathogens in urban rivers impacted by domestic sewage. Environ Pollut. 249:24–35.
   PubMed Web of Science ®Google Scholar
• Derrien M, Kim MS, Ock G, Hong S, Cho J, Shin KH, Hur J. 2018. Estimation of different source contributions to sediment organic matter in an agricultural-forested watershed using end member mixing analyses based on stable isotope ratios and fluorescence spectroscopy. Sci Total Environ. 618:569–578.
   PubMed Web of Science ®Google Scholar
• Du Y, Lu Y, Roebuck JA, Jr., Liu D, Chen F, Zeng Q, Xiao K, He H, Liu Z, Zhang Y, et al. 2021. Direct versus indirect effects of human activities on dissolved organic matter in highly impacted lakes. Sci Total Environ. 752:141839–141839.
   PubMed Web of Science ®Google Scholar
• Duarte S, Bärlocher F, Trabulo J, Cássio F, Pascoal C. 2015. Stream-dwelling fungal decomposer communities along a gradient of eutrophication unraveled by 454 pyrosequencing. Fungal Diver. 70(1):127–148.
   Web of Science ®Google Scholar
• Fang H, Wang H, Cai L, Yu Y. 2015. Prevalence of antibiotic resistance genes and bacterial pathogens in long-term manured greenhouse soils as revealed by metagenomic survey. Environ Sci Technol. 49(2):1095–1104.
   PubMed Web of Science ®Google Scholar
• Gade L, McCotter OZ, Bowers JR, Waddell V, Brady S, Carvajal JA, Sunenshine R, Komatsu KK, Engelthaler DM, Chiller T, et al. 2020. The detection of Coccidioides from ambient air in Phoenix, Arizona: Evidence of uneven distribution and seasonality. Med Mycol. 58(4):552–559.
   PubMed Web of Science ®Google Scholar
• Harjung A, Ejarque E, Battin T, Butturini A, Sabater F, Stadler M, Schelker J. 2019. Experimental evidence reveals impact of drought periods on dissolved organic matter quality and ecosystem metabolism in subalpine streams. Limnol Oceanogr. 64(1):46–60.
   Web of Science ®Google Scholar
• Harris JM, Vinobaba P, Kularatne RKA, Kankanamge CE. 2016. Spatial and temporal distribution of cyanobacteria in Batticaloa Lagoon. J Environ Sci (China). 47:211–218.
   PubMed Web of Science ®Google Scholar
• Jin D, Kong X, Cui B, Jin S, Xie Y, Wang X, Deng Y. 2018. Bacterial communities and potential waterborne pathogens within the typical urban surface waters. Sci Rep. 8(1):13368.
   PubMed Web of Science ®Google Scholar
• Kowalczuk P, Tilstone GH, Zabłocka M, Röttgers R, Thomas R. 2013. Composition of dissolved organic matter along an Atlantic meridional transect from fluorescence spectroscopy and parallel factor analysis. Mar Chem. 157:170–184.
   Web of Science ®Google Scholar
• Lambert T, Bouillon S, Darchambeau F, Massicotte P, Borges AV. 2016. Shift in the chemical composition of dissolved organic matter in the Congo River network. Biogeosciences. 13(18):5405–5420.
   Web of Science ®Google Scholar
• Leight AK, Crump BC, Hood RR. 2018. Assessment of fecal indicator bacteria and potential pathogen co-occurrence at a shellfish growing area. Front Microbiol. 9:384.
   PubMed Web of Science ®Google Scholar
• Li H, Lu L, Huang W, Yang J, Ran Y. 2014. In-situ partitioning and bioconcentration of polycyclic aromatic hydrocarbons among water, suspended particulate matter, and fish in the Dongjiang and Pearl Rivers and the Pearl River Estuary, China. Mar Pollut Bull. 83(1):306–316.
   PubMed Web of Science ®Google Scholar
• Li W, Wang M, Bian X, Guo J, Cai L. 2016. A high-level fungal diversity in the intertidal sediment of Chinese seas presents the spatial variation of community composition. Front Microbiol. 7(2098):2098.
   PubMed Web of Science ®Google Scholar
• Liang Z, Yu Y, Ye Z, Li G, Wang W, An T. 2020. Pollution profiles of antibiotic resistance genes associated with airborne opportunistic pathogens from typical area, Pearl River Estuary and their exposure risk to human. Environ Int. 143:105934.
   PubMed Web of Science ®Google Scholar
• Liu Y, Lin Q, Feng J, Yang F, Du H, Hu Z, Wang H. 2020. Differences in metabolic potential between particle-associated and free-living bacteria along Pearl River Estuary. Sci Total Environ. 728:138856.
   PubMed Web of Science ®Google Scholar
• Mai YZ, Lai ZN, Li XH, Peng SY, Wang C. 2018. Structural and functional shifts of bacterioplanktonic communities associated with spatiotemporal gradients in river outlets of the subtropical Pearl River Estuary, South China. Mar Pollut Bull. 136:309–321.
   PubMed Web of Science ®Google Scholar
• Marti E, Jofre J, Luis Balcazar J. 2013. Prevalence of antibiotic resistance genes and bacterial community composition in a river influenced by a wastewater treatment plant. PLoS One. 8(10):e78906.
   PubMed Web of Science ®Google Scholar
• Moehling TJ, Lee DH, Henderson ME, McDonald MK, Tsang PH, Kaakeh S, Kim ES, Wereley ST, Kinzer-Ursem TL, Clayton KN, et al. 2020. A smartphone-based particle diffusometry platform for sub-attomolar detection of Vibrio cholerae in environmental water. Biosens Bioelectron. 167:112497–112497.
   PubMed Web of Science ®Google Scholar
• Mohiuddin MM, Botts SR, Paschos A, Schellhorn HE. 2019. Temporal and spatial changes in bacterial diversity in mixed use watersheds of the Great Lakes region. J Great Lakes Res . 45(1):109–118.
   Web of Science ®Google Scholar
• Murphy KR, Hambly A, Singh S, Henderson RK, Baker A, Stuetz R, Khan SJ. 2011. Organic matter fluorescence in municipal water recycling schemes: toward a unified PARAFAC model. Environ Sci Technol. 45(7):2909–2916.
   PubMed Web of Science ®Google Scholar
• Murphy KR, Stedmon CA, Waite TD, Ruiz GM. 2008. Distinguishing between terrestrial and autochthonous organic matter sources in marine environments using fluorescence spectroscopy. Mar Chem . 108(1-2):40–58.
   Web of Science ®Google Scholar
• Murphy KR, Stedmon CA, Wenig P, Bro R. 2014. OpenFluor- an online spectral library of auto-fluorescence by organic compounds in the environment. Anal Methods . 6(3):658–661.
   Web of Science ®Google Scholar
• Ouyang L, Chen H, Liu X, Wong MH, Xu F, Yang X, Xu W, Zeng Q, Wang W, Li S. 2020. Characteristics of spatial and seasonal bacterial community structures in a river under anthropogenic disturbances. Environ Pollut. 264:114818.
   PubMed Web of Science ®Google Scholar
• Retelletti Brogi S, Kim J-H, Ryu J-S, Jin YK, Lee YK, Hur J. 2019. Exploring sediment porewater dissolved organic matter (DOM) in a mud volcano: Clues of a thermogenic DOM source from fluorescence spectroscopy. Mar Chem. 211:15–24.
   Web of Science ®Google Scholar
• Rodriguez-Avella KA, Baraer M, Mark B, McKenzie J, Somers L. 2020. Comparing the performance of three methods to assess DOM dynamics within two distinct glacierized watersheds of the tropical Andes. Environ Pollut. 265(Pt A):115052–115052.
   PubMed Web of Science ®Google Scholar
• Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, et al. 2009. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 75(23):7537–7541.
   PubMed Web of Science ®Google Scholar
• Shao K, Gao G, Wang Y, Tang X, Qin B. 2013. Vertical diversity of sediment bacterial communities in two different trophic states of the eutrophic Lake Taihu, China. J Environ Sci . 25(6):1186–1194.
   Web of Science ®Google Scholar
• Singulani J. d L, da Silva J. d F, Gullo FP, Costa MC, Fusco-Almeida AM, Enguita FJ, Soares Mendes-Giannini MJ. 2020. Fungal-host interactions: insights into microRNA in response to Paracoccidioides species. Mem Inst Oswaldo Cruz. 115:e200238.
   PubMed Web of Science ®Google Scholar
• Sun Z, Li G, Wang C, Jing Y, Zhu Y, Zhang S, Liu Y. 2014. Community dynamics of prokaryotic and eukaryotic microbes in an estuary reservoir. Sci Rep. 4:6966.
   PubMed Web of Science ®Google Scholar
• Tao Y, Yun J, Wang J, Xu P, Li C, Liu H, Lan Y, Pan J, Du W. 2020. High-performance detection of Mycobacterium bovis in milk using digital LAMP. Food Chem. 327:126945.
   PubMed Web of Science ®Google Scholar
• Wang P, Chen B, Yuan R, Li C, Li Y. 2016. Characteristics of aquatic bacterial community and the influencing factors in an urban river. Sci Total Environ. 569-570:382–389.
   PubMed Web of Science ®Google Scholar
• Wang Y, Liu Y, Wang J, Luo T, Zhang R, Sun J, Zheng Q, Jiao N. 2019. Seasonal dynamics of bacterial communities in the surface seawater around subtropical Xiamen Island, China, as determined by 16S rRNA gene profiling. Mar Pollut Bull. 142:135–144.
   PubMed Web of Science ®Google Scholar
• Wolf-Baca M, Piekarska K. 2020. Biodiversity of organisms inhabiting the water supply network of Wroclaw. Detection of pathogenic organisms constituting a threat for drinking water recipients. Sci Total Environ. 715:136732.
   PubMed Web of Science ®Google Scholar
• Wu D, Su Y, Xi H, Chen X, Xie B. 2019. Urban and agriculturally influenced water contribute differently to the spread of antibiotic resistance genes in a mega-city river network. Water Res. 158:11–21.
   PubMed Web of Science ®Google Scholar
• Wu J, Hong Y, Guan F, Wang Y, Tan Y, Yue W, Wu M, Bin L, Wang J, Wen J. 2016. A rapid and high-throughput microplate spectrophotometric method for field measurement of nitrate in seawater and freshwater. Sci Rep. 6:20165.
   PubMed Web of Science ®Google Scholar
• Xie M, Wang W-X. 2020. Contrasting temporal dynamics of dissolved and colloidal trace metals in the Pearl River Estuary. Environ Pollut. 265(Pt B):114955.
   PubMed Web of Science ®Google Scholar
• Xue N, Wang L, Li W, Wang S, Pan X, Zhang D. 2020. Increased inheritance of structure and function of bacterial communities and pathogen propagation in plastisphere along a river with increasing antibiotics pollution gradient. Environ Pollut. 265(Pt A):114641.
   PubMed Web of Science ®Google Scholar
• Yamashita Y, Panton A, Mahaffey C, Jaffé R. 2011. Assessing the spatial and temporal variability of dissolved organic matter in Liverpool Bay using excitation–emission matrix fluorescence and parallel factor analysis. Ocean Dyn. 61(5):569–579.
   Web of Science ®Google Scholar
• Ye F, Huang X, Zhang D, Tian L, Zeng Y. 2012. Distribution of heavy metals in sediments of the Pearl River Estuary, Southern China: Implications for sources and historical changes. J Environ Sci . 24(4):579–588.
   Web of Science ®Google Scholar
• Yu J, Cleveland TE, Nierman WC, Bennett JW. 2005. Aspergillus flavus genomics: gateway to human and animal health, food safety, and crop resistance to diseases. Rev Iberoam Micol. 22(4):194–202.
   PubMedGoogle Scholar
• Zhang L, Zhou Y, Cheng Y, Lu W, Liang Y. 2021. Effect of different types of industrial wastewater on the bacterial community of urban rivers. J Freshwater Ecol. 36(1):31–48.
   Web of Science ®Google Scholar
• Zhang W, Lei M, Li Y, Wang P, Wang C, Gao Y, Wu H, Xu C, Niu L, Wang L, et al. 2019. Determination of vertical and horizontal assemblage drivers of bacterial community in a heavily polluted urban river. Water Res. 161:98–107.
   PubMed Web of Science ®Google Scholar