294
Views
8
CrossRef citations to date
0
Altmetric
ARTICLE

Genetic Structure of Striped Bass in the Southeastern United States and Effects from Stock Enhancement

, &
Pages 653-667 | Received 14 May 2013, Accepted 05 Mar 2014, Published online: 27 May 2014

REFERENCES

  • Ayllon, F., J.L. Martinez, and E. Garcia-Vazquez. 2006. Loss of regional population structure in Atlantic Salmon, Salmo salar L., following stocking. ICES Journal of Marine Science 63:1269–1273.
  • Axon, J., and D. Whitehurst. 1985. Striped Bass management in lakes with emphasis on management problems. Transactions of the American Fisheries Society 114:8–11.
  • Balloux, F., H. Brunner, N. Lugon-Moulin, J. Hausser, and J. Goudet. 2000. Microsatellites can be misleading: an empirical and simulation study. Evolution 54:1414–1422.
  • Blankenship, S.M., M.P. Small, and J.D. Bumgarner. 2009. Temporal stability of genetic variation within natural populations of summer steelhead receiving mitigation hatchery fish. Transactions of the American Fisheries Society 138:1052–1064.
  • Brown, J.J., A. Ehtisham, and D.O. Conover. 1998. Variation in larval growth rate among Striped Bass stocks from different latitudes. Transactions of the American Fisheries Society 127:598–610.
  • Bulak, J., J. Crane, D.H. Secor, and J. Dean. 1997. Recruitment dynamics of Striped Bass in the Santee–Cooper system, South Carolina. Transactions of the American Fisheries Society 126:133–143.
  • Bulak, J., C.S. Thomason, K. Han, and B. Ely. 2004. Genetic variation and management of Striped Bass populations in the coastal rivers of South Carolina. North American Journal of Fisheries Management 24:1322–1329.
  • Bulak, J., D. Wethey, and M. White. 1995. Evaluation of management options for a reproducing Striped Bass population in the Santee–Cooper system, South Carolina. North American Journal of Fisheries Management 15:84–94.
  • Chen, Y., S. Parmenter, and B. May. 2013. Genetic characterization and management of the endangered Mohave Tui Chub. Conservation Genetics 14:11–20
  • Ciborowski, K.L., S. Consuegra, C. Garcia de Leaniz, J. Wang, M.A. Beaumont, and W.C. Jordan. 2007. Stocking may increase mitochondrial DNA diversity but fails to halt the decline of endangered Atlantic Salmon populations. Conservation Genetics 8:1355–1367.
  • Couch, C.R., A.F. Garber, C.E. Rexroad III, J.M. Abrams, J.A. Stannard, M.E. Westerman, and C.V. Sullivan. 2006. Isolation and characterization of 149 novel microsatellite DNA markers for Striped Bass, Morone saxatilis, and cross-species amplification in White Bass, Morone chrysops, and their hybrid. Molecular Ecology Notes 6:667–669.
  • Coutant, C.C. 1985. Striped Bass, temperature, and dissolved oxygen: a speculative hypothesis for environmental risk. Transactions of the American Fisheries Society 114:31–61.
  • Crispo, E., P. Bentzen, D.N. Reznick, M.T. Kinnison, and A.P. Hendry. 2006. The relative influence of natural selection and geography on gene flow in guppies. Molecular Ecology 15:49–62.
  • Diaz, M., J. Macpherson, B. Ely, and J. Bulak. 1998. Striped Bass population subdivision within the Santee–Cooper system, South Carolina. Molecular Marine Biology and Biotechnology 7:191–196.
  • Diaz, M., D. Wethey, J. Bulak, and B. Ely. 2000. Effect of harvest and effective population size on genetic diversity in a Striped Bass population. Transactions of the American Fisheries Society 129:1367–1372.
  • Earl, D.A. and B.M. vonHoldt. 2012. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing Evanno method. Conservation Genetics Resources 4:359–361.
  • Eldridge, W.H., J.M. Myers, and K.A. Naish. 2009. Long-term changes in the fine-scale population structure of Coho Salmon populations (Oncorhynchus kisutch) subject to extensive supportive breeding. Heredity 103:299–309.
  • Eldridge, W.H., and K.A. Naish. 2007. Long-term effects of translocation and release numbers on fine-scale population structure among Coho Salmon (Oncorhynchus kisutch). Molecular Ecology 16:2407–2421.
  • Elo, K. 2004. Gene flow and conservation of genetic variation in anadromous Atlantic Salmon (Salmo salar). Hereditas 119:149–159.
  • Evanno, G., S. Regnaut, and J. Goudet. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation summary. Molecular Ecology 14:2611–2620.
  • Excoffier, L., and H.E. L. Lischer. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Molecular Ecology Resources 10:564–567.
  • Finnegan, A.K., and J.R. Stevens. 2008. Assessing the long‐term genetic impact of historical stocking events on contemporary populations of Atlantic Salmon, Salmo salar. Fisheries Management and Ecology 15:315–326
  • Fountain, J., T. Darden, W. Jenkins, and M. Denson. 2009. Three multiplexed microsatellite panels for Striped Bass. Southeastern Naturalist 8:671–676.
  • Frankham, R., J.D. Ballou, and D.A. Briscoe. 2009. Introduction to conservation genetics, 2nd edition. Cambridge University Press, New York.
  • Garza, J.C., and E.G. Williamson. 2001. Detection of reduction in population size using data from microsatellite loci. Molecular Ecology 10:305–318.
  • Goudet, J. 1995. FSTAT version 1.2: a computer program to calculate F-statistics. Journal of Heredity 86:485–486.
  • Grandjean, F., S. Verne, C. Cherbonnel, and A. Richard. 2009. Fine-scale genetic structure of Atlantic Salmon (Salmo salar) using microsatellite markers: effects of restocking and natural recolonization. Freshwater Biology 54:417–433.
  • Hansen, M.M., D. Bekkevold, L.F. Jensen, K.L. D. Mensberg, and E.E. Nielsen. 2006. Genetic restoration of a stocked Brown Trout Salmo trutta population using microsatellite DNA analysis of historical and contemporary samples. Journal of Applied Ecology 43:669–679.
  • Hansen, M.M., D.J. Fraser, K. Meier, and K.L. D. Mensberg. 2009. Sixty years of anthropogenic pressure: a spatio-temporal genetic analysis of Brown Trout populations subject to stocking and population declines. Molecular Ecology 18:2549–2562.
  • Hansen, M.M., E. Kenchington, and E.E. Nielsen. 2001. Assigning individual fish to populations using microsatellite DNA markers. Fish and Fisheries 2:93–112.
  • Hardy, O.J., N. Charbonnel, H. Freville, and M. Huertz. 2003. Microsatellite allele size: a simple test to assess their significance on genetic differentiation. Genetics 163:1467–1482.
  • Hardy, O.J. and X. Vekemans. 2002. SPAGeDi: a versatile computer program to analyse spatial genetic structure at the individual or population levels. Molecular Ecology Notes 2:618–620.
  • Hartl, D.L., and A.G. Clark. 2007. Principles of population genetics, . 4th edition. Sinauer, Sunderland, Massachusettes.
  • Jacobs, J.M., S. Lindell, W. Van Heukelem, E.M. Hallerman, and R.M. Harrell. 1999. Strain evaluation of Striped Bass (Morone saxatilis) under controlled conditions. Aquaculture 173:171–177.
  • Kalinowski, S.T., M.L. Taper, and T.C. Marshall. 2007. Revising how the computer program CERVUS accommodates genotyping error increases success in paternity assignment. Molecular Ecology 16:1099–1106.
  • Koljonen, M.L., H. Jansson, T. Paaver, O. Vasin, and J. Koskiniemi. 1999. Phylogeographic lineages and differentiation pattern of Atlantic Salmon (Salmo salar) in the Baltic Sea with management implications. Canadian Journal of Fisheries and Aquatic Sciences 56:1766–1780.
  • Laikre, L., M.K. Schwartz, R.S. Waples, N. Ryman, and the National Center for Ecological Analysis and Synthesis/National Evolutionary Synthesis Center Working Group on Genetic Monitoring. 2010. Compromising genetic diversity in the wild: unmonitored large-scale release of plants and animals. Trends in Ecology and Evolution 25:520–529.
  • Larsen, P.F., M.M. Hansen, E.E. Nielsen, L.F. Jensen, and V. Loeschcke. 2005. Stocking impact and temporal stability of genetic composition in a brackish Northern Pike population (Esox lucius L.), assessed using microsatellite DNA analysis of historical and contemporary samples. Heredity 95:136–143.
  • Larsson, L.C., L. Laikre, C. Andre, T.G. Dahlgren, and N. Ryman. 2010. Temporally stable genetic structure of heavily exploited Atlantic Herring (Clupea harengus) in Swedish waters. Heredity 104:40–51.
  • Liu, Z.J., and J.F. Cordes. 2004. DNA marker technologies and their applications in aquaculture genetics. Aquaculture 238:1–37.
  • Liu, J., and B. Ely. 2009. Sibship reconstruction demonstrates the extremely low effective population size of Striped Bass Morone saxatilis in the Santee–Cooper system, South Carolina, USA. Molecular Ecology 18:4112–4120.
  • Lynch, M., and M. O’Hely. 2001. Captive breeding and the genetic fitness of natural populations. Conservation Genetics 2:363–378.
  • Marie, A.D., L. Bernatchez, and D. Garant. 2010. Loss of genetic integrity correlates with stocking intensity in Brook Charr (Salvelinus fontinalis). Molecular Ecology 19:2025–2037.
  • Martinez, J.L., J. Dumas, E. Beall, and E. Garcia-Vazquez. 2001. Assessing introgression of foreign strains in wild Atlantic Salmon populations: variation in microsatellites assessed in historic scale collections. Freshwater Biology 46:835–844.
  • McGinnity, P., E. Jennings, E. deEyto, N. Allott, P. Samuelsson, G. Rogan, K. Whelan, and T. Cross. 2009. Impact of naturally spawning captive-bred Atlantic Salmon on wild populations: depressed recruitment and increased risk of climate-mediated extinction. Proceedings of the Royal Society B: Biological Sciences 276:3601–3610.
  • Morris, J.A. Jr., R.A. Rulifson, and L.H. Toburen. 2003. Life history strategies of Striped Bass, Morone saxatilis, populations inferred from otolith microchemistry. Fisheries Research 62:53–63.
  • Neff, B.D., and M.R. Gross. 2001. Microsatellite evolution in vertebrates: inference from AC dinucleotide repeats. Evolution 55:1717–1733.
  • Parker, P.G., A.A. Snow, M.D. Schug, G.C. Booton, and P.A. Fuerst. 1998. What molecules can tell us about populations: choosing and using a molecular marker. Ecology 79:361–382.
  • Patrick, W.S. 2002. Genetic structure of Striped Bass, Morone saxatilis, populations from the Roanoke, Tar, and Neuse rivers of North Carolina. . Master's thesis. East Carolina University, Greenville, North Carolina.
  • Patrick, W.S., O. Bin, K.A. Schwabe, P.W. Schuhmann. 2006. Hatchery programs, stock enhancement, and cost effectiveness: a case study of the Albemarle Sound/Roanoke River stocking program 1981–1996. Marine Policy 30:299–307.
  • Patrick, W.S., and M.L. Moser. 2001. Potential competition between hybrid Striped Bass (Morone saxatilis × M. Americana) and Striped Bass (M. saxatilis) in the Cape Fear River Estuary, North Carolina. Estuaries 24:425–429.
  • Perrier, C., R. Guyomard, J. Bagliniere, and G. Evanno. 2011. Determinants of hierarchical genetic structure in Atlantic Salmon populations: environmental factors vs. anthropogenic influences. Molecular Ecology 20:4231–4245.
  • Pritchard, J.K., M. Stephens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945–959.
  • Quinn, T.P., and T.R. Seamons. 2009. Tales from scales: old DNA yields insights into contemporary evolutionary processes affecting fishes. Molecular Ecology 18:2545–2546.
  • Raymond, M., and F. Rousset. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86:248–249.
  • Reinert, T.R., C.A. Jennings, T.A. Will, and J.E. Wallin. 2005. Decline and potential recovery of Striped Bass in a southeastern US estuary. Fisheries 30(3):18–25.
  • Reisenbichler, R.R., and S.P. Rubin. 1999. Genetic changes from artificial propagation of Pacific salmon affect the productivity and viability of supplemented populations. ICES Journal of Marine Science 56:459–466.
  • Rexroad, C., R. Vallejo, I. Coulibaly, C. Couch, A. Garber, M. Westerman, and C. Sullivan. 2006. Identification and characterization of microsatellites for Striped Bass from repeat-enriched libraries. Conservation Genetics 971–982.
  • Rice, W.R. 1989. Analyzing tables of statistical tests. Evolution 43:223–225.
  • Ryman, N., and L. Laikre. 1991. Effects of supportive breeding on the genetically effective population size. Conservation Biology 5:325–329.
  • Shaw, P.W., C. Turan, J.M. Wright, M. O’Connell, and G.R. Carvalho. 1999. Microsatellite DNA analysis of population structure in Atlantic Herring (Clupea harengus), with direct comparison to allozyme and mtDNA RFLP analyses. Heredity 83:490–499.
  • Slatkin, M. 1995. A measure of population subdivision based on microsatellite allele frequencies. Genetics 139:457–462.
  • Susnik, S., P. Berrebi, P. Dovc, M.M. Hansen, and H. Snoj. 2004. Genetic introgression between wild and stocked salmonids and the prospects for using molecular markers in population rehabilitation: the case of the Adriatic grayling (Thymallus thymallus L. 1785). Heredity 93:273–282.
  • Tringali, M.D., and T.M. Bert. 1998. Risk to genetic effective population size should be an important consideration in fish stock-enhancement programs. Bulletin of Marine Science 62:641–659.
  • Utter, F.M. 2000. Patterns of subspecific anthropogenic introgression in two salmonid genera. Reviews in Fish Biology and Fisheries 10:265–279.
  • Van Oosterhout, C., W.F. Hutchinson, D.P. M. Wills, and P. Shipley. 2004. Micro-checker: software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology Notes 4:535–538.
  • Waples, R.S., and C. Do. 2008. LDNE: a program for estimating effective population size from data on linkage disequilibrium. Molecular Ecology Resources 8:753–756.
  • Wirgin, I., D. Currie, N. Roy, L. Maceda, and J.R. Waldman. 2005. Introgression of nuclear DNA (nDNA) alleles of stocked Atlantic coast Striped Bass with the last remaining native Gulf of Mexico population. North American Journal of Fisheries Management 25:464–474.
  • Woodroffe, J.R. 2011. Historical ecology of Striped Bass stocking in the southeastern United States. . Master's thesis. East Carolina University, Greenville, North Carolina.
  • Woods, L.C. III. 2001. Domestication and strain evaluation of Striped Bass (Morone saxatilis). Aquaculture 202:343–350

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.