Landscape Prediction and Mapping of Game Fish Biomass, an Ecosystem Service of Michigan Rivers

REFERENCES

• Argent, D. G., and P. A. Flebbe. 1999. Fine sediment effects on Brook Trout eggs in laboratory streams. Fisheries Research 39:253–262.
   Web of Science ®Google Scholar
• Askey, P. J., L. K. Hogberg, J. R. Post, L. J. Jackson, T. Rhodes, and M. S. Thompson. 2007. Spatial patterns in fish biomass and relative trophic level abundance in a wastewater enriched river. Ecology of Freshwater Fish 16:343–353.
   Web of Science ®Google Scholar
• Boyd, J., and S. Banzhaf. 2007. What are ecosystem services? The need for standardized environmental accounting units. Ecological Economics 63:616–626.
   Web of Science ®Google Scholar
• Brenden, T., and coauthors. 2006. A GIS framework for collecting, managing, and analyzing multiscale landscape variables across large regions for river conservation and management. Pages 49–74 in R. M. Hughes, L. Wang, and P. W. Seelbach, editors. Landscape influences on stream habitats and biological assemblages. American Fisheries Society, Symposium 48, Bethesda, Maryland.
   Google Scholar
• Brewer, S. K. 2013. Channel unit use by Smallmouth Bass: do land-use constraints or quantity of habitat matter? North American Journal of Fisheries Management 33:351–358.
   Web of Science ®Google Scholar
• Brewer, S. K., and C. F. Rabeni. 2011. Interactions between natural-occurring landscape conditions and land use influencing the abundance of riverine Smallmouth Bass, Micropterus dolomieu. Canadian Journal of Fisheries and Aquatic Sciences 68:1922–1933.
   Web of Science ®Google Scholar
• Brewer, S. K., C. F. Rabeni, S. P. Sowa, and G. Annis. 2007. Natural landscape and stream segment attributes influencing the distribution and relative abundance of riverine Smallmouth Bass in Missouri. North American Journal of Fisheries Management 27:326–341.
   Web of Science ®Google Scholar
• Carpenter, S. R., N. F. Caraco, D. L. Correll, R. W. Howarth, A. N. Sharpley, and V. H. Smith. 1998. Nonpoint pollution of surface waters with phosphorus and nitrogen. Ecological Applications 8:559–568.
   Web of Science ®Google Scholar
• Chan, K. M. A., M. R. Shaw, D. R. Cameron, E. C. Underwood, and G. C. Daily. 2006. Conservation planning for ecosystem services. PloS (Public Library of Science) Biology [online serial] 4(11):2138–2152.
   Web of Science ®Google Scholar
• Coble, D. W. 1975. Smallmouth Bass. Pages 21–33 in H. Clepper, editor. Black bass biology and management. Sport Fishing Institute, Washington, D.C.
   Google Scholar
• Cooper, G. P., and J. R. Ryckman. 1981. Population estimates by mark-and-recapture. Appendix in J. W. Merna, J. C. Schneider, G. R. Alexander, W. D. Alward, and R. L. Eshenroder, editors. Manual of fisheries survey methods. Michigan Department of Natural Resources, Fisheries Management Report 9, Ann Arbor.
   Google Scholar
• Creque, S. M., E. S. Rutherford, and T. G. Zorn. 2005. Use of GIS-derived landscape-scale habitat features to explain spatial patterns of fish density in Michigan rivers. North American Journal of Fisheries Management 25:1411–1425.
   Web of Science ®Google Scholar
• Curry, R. A., and W. S. MacNeill. 2004. Population-level responses to sediment during early life in Brook Trout. Journal of the North American Benthological Society 23:140–150.
   Web of Science ®Google Scholar
• Davies, S. P., and S. K. Jackson. 2006. The biological condition gradient: a descriptive model for interpreting change in aquatic ecosystems. Ecological Applications 16:1251–1266.
   PubMed Web of Science ®Google Scholar
• de Groot, R. S., R. Alkemade, L. Braat, L. Hein, and L. Willemen. 2010. Challenges in integrating the concept of ecosystem services and values in landscape planning, management and decision making. Ecological Complexity 7:260–272.
   Web of Science ®Google Scholar
• deBruyn, A. M. H., D. J. Marcogliese, and J. B. Rasmussen. 2003. The role of sewage in a large river food web. Canadian Journal of Fisheries and Aquatic Sciences 60:1332–1344.
   Web of Science ®Google Scholar
• Diana, J. S. 2004. Biology and ecology of fishes, 2nd edition. Cooper Publishing Group, Traverse City, Michigan.
   Google Scholar
• Dodds, W. K., and B. J. F. Biggs. 2002. Water velocity attenuation by stream periphyton and macrophytes in relatino to growth form and architecture. Journal of the North American Benthological Society 21:2–15.
   Web of Science ®Google Scholar
• Dodds, W. K., and E. B. Welch. 2000. Establishing nutrient criteria in streams. Journal of the North American Benthological Society 19:186–196.
   Web of Science ®Google Scholar
• Egoh, B., B. Reyers, M. Rouget, D. M. Richardson, D. C. Le Maitre, and A. S. van Jaarsveld. 2008. Mapping ecosystem services for planning and management. Agriculture Ecosystems and Environment 127:135–140.
   Web of Science ®Google Scholar
• Elith, J., J. R. Leathwick, and T. Hastie. 2008. A working guide to boosted regression trees. Journal of Animal Ecology 77:802–813.
   PubMed Web of Science ®Google Scholar
• Fausch, K. D., C. L. Hawkes, and M. G. Parsons. 1988. Models that predict standing crop of stream fish from habitat variables: 1950-85. U.S. Forest Service General Technical Report PNW-GTR-213.
   Google Scholar
• Fausch, K. D., and R. J. White. 1981. Competition between Brook Trout (Salvelinus fontinalis) and Brown Trout (Salmo trutta) for positions in a Michigan stream. Canadian Journal of Fisheries and Aquatic Sciences 38:1220–1227.
   Web of Science ®Google Scholar
• Friedman, J. H. 2001. Greedy function approximation: a gradient boosting machine. Annals of Statistics 29:1189–1232.
   Web of Science ®Google Scholar
• Friedman, J. H., and J. J. Meulman. 2003. Multiple additive regression trees with application in epidemiology. Statistics in Medicine 22:1365–1381.
   PubMed Web of Science ®Google Scholar
• Frissell, C. A., W. J. Liss, C. E. Warren, and M. D. Hurley. 1986. A hierarchical framework for stream habitat classification: viewing streams in a watershed context. Environmental Management 10:199–214.
   Web of Science ®Google Scholar
• Gido, K. B., J. A. Falke, R. M. Oakes, and K. J. Hase. 2006. Fish-habitat relations across spatial scales in prairie streams. Pages 265–285 in R. M. Hughes, L. Wang, and P. W. Seelbach, editors. Landscape influences on stream habitats and biological assemblages. American Fisheries Society, Symposium 48, Bethesda, Maryland.
   Google Scholar
• Gimona, A., and D. van der Horst. 2007. Mapping hotspots of multiple landscape functions: a case study on farmland afforestation in Scotland. Landscape Ecology 22:1255–1264.
   Web of Science ®Google Scholar
• GLSC (Great Lakes Science Center). 2006. The Great Lakes aquatic GAP project. U.S. Geological Survey, Ann Arbor, Michigan.
   Google Scholar
• Hart, D. D., and C. T. Robinson. 1990. Resource limitation in a stream community: phosphorus enrichment effects on periphyton and grazers. Ecology 71:1494–1502.
   Web of Science ®Google Scholar
• Heal, G. M., E. B. Barbier, K. J. Boyle, A. P. Covich, S. P. Gloss, C. H. Hershner, J. P. Hoehn, C. P. Pringle, S. Polasky, and K. Segerson. 2005. Valuing ecosystem services: toward better environmental decision-making. National Academies Press, Washington, D.C.
   Google Scholar
• Hokanson, K. E. F. 1977. Temperature requirements of some percids and adaptations to seasonal temperature cycle. Journal of the Fisheries Research Board of Canada 34:1524–1550.
   Web of Science ®Google Scholar
• Horrall, R. M. 1981. Behavioral stock-isolating mechanisms in Great Lakes fishes with special reference to homing and site imprinting. Canadian Journal of Fisheries and Aquatic Sciences 38:1481–1496.
   Web of Science ®Google Scholar
• Hoyer, M. V., and D. E. Canfield Jr. 1991. A phosphorus-fish standing crop relationship for streams? Lake and Reservoir Management 7:25–32.
   Google Scholar
• Johnson, B. L., D. L. Smith, and F. R. Carline. 1988. Habitat preferences, survival, growth, foods, and harvests of Walleye and Walleye × Sauger hybrids. North American Journal of Fisheries Management 8:292–304.
   Google Scholar
• Johnston, N. T., C. J. Perrin, P. A. Slaney, and B. R. Ward. 1990. Increased juvenile salmonid growth by whole-river fertilization. Canadian Journal of Fisheries and Aquatic Sciences 47:862–872.
   Web of Science ®Google Scholar
• Jones, D. R., J. W. Kiceniuk, and O. S. Bamford. 1974. Evaluation of swimming performance of several fish species from Mackenzie River. Journal of the Fisheries Research Board of Canada 31:1641–1647.
   Web of Science ®Google Scholar
• Kienast, F., J. Bolliger, M. Potschin, R. S. de Groot, P. H. Verburg, I. Heller, D. Wascher, and R. Haines-Young. 2009. Assessing landscape functions with broad-scale environmental data: insights gained from a prototype development for Europe. Environmental Management 44:1099–1120.
   PubMed Web of Science ®Google Scholar
• Kleiman, R. 1995. Modeling water quality in Michigan rivers from landscape variables. Master's thesis. University of Michigan, Ann Arbor.
   Google Scholar
• Kotchen, M., M. Moore, F. Lupi, and E. Rutherford. 2006. Environmental constraints on hydropower: an ex-post benefit-cost analysis of dam relicensing in Michigan. Land Economics 82:384–403.
   Google Scholar
• Lambert, D. 1992. Zero-inflated poisson regression, with an application to defects in manufacturing. Technometrics 34:1–14.
   Web of Science ®Google Scholar
• Lyons, J., L. Wang, and T. D. Simonson. 1996. Development and validation of an index of biotic integrity for coldwater streams in Wisconsin. North American Journal of Fisheries Management 16:241–256.
   Google Scholar
• McKenna, J. E. Jr., and J. H. Johnson. 2011. Landscape models of Brook Trout abundance and distribution in lotic habitat with field validation. North American Journal of Fisheries Management 31:742–756.
   Web of Science ®Google Scholar
• McKenna, J. E. Jr., R. P. McDonald, C. Castiglione, S. S. Morrison, K. P. Kowalski, and D. R. Passino-Reader. 2006. A broadscale fish–habitat model development process: Genesee basin, New York. Pages 533–554 in R. M. Hughes, L. Wang, and P. W. Seelbach, editors. Landscape influences on stream habitats and biological assemblages. American Fisheries Society, Symposium 48, Bethesda, Maryland.
   Google Scholar
• McKenna, J. E. Jr., M. T. Slattery, and K. M. Clifford. 2013. Broad-scale patterns of Brook Trout responses to introduced Brown Trout in New York. North American Journal of Fisheries Management 33:1221–1235.
   Web of Science ®Google Scholar
• McRae, B. J., and J. S. Diana. 2005. Factors influencing density of age-0 Brown Trout and Brook Trout in the Au Sable River, Michigan. Transactions of the American Fisheries Society 134:132–140.
   Web of Science ®Google Scholar
• MDNR (Michigan Department of Natural Resources). 2010. Michigan trout lakes and streams 2008. MDNR, Institute for Fisheries Research, Ann Arbor.
   Google Scholar
• Melstrom, R. T., and F. Lupi. 2013. Valuing recreational fishing in the Great Lakes. North American Journal of Fisheries Management 33:1184–1193.
   Google Scholar
• Melstrom, R. T., F. Lupi, P. C. Esselman, and R. J. Stevenson. 2015. Valuing recreational fishing quality at rivers and streams. Water Resources Research 51:140–150.
   Web of Science ®Google Scholar
• Merron, G. S. 1982. Growth rate of Brown Trout (Salmo trutta) in areas of the Au Sable River, Michigan, before and after domestic sewage diversion. Michigan Department of Natural Resources, Fisheries Research Report 1900, Ann Arbor.
   Google Scholar
• Meyer, B. C., and R. Grabaum. 2008. MULBO: model framework for multicriteria landscape assessment and optimisation, a support system for spatial land use decisions. Landscape Research 33:155–179.
   Web of Science ®Google Scholar
• Millennium Ecosystem Assessment. 2005. Ecosystems and human well-being: synthesis. Island Press, Washington, D.C.
   Google Scholar
• Miltner, R. J., and E. T. Rankin. 1998. Primary nutrients and the biotic integrity of rivers and streams. Freshwater Biology 40:145–158.
   Web of Science ®Google Scholar
• Naidoo, R., and T. H. Ricketts. 2006. Mapping the economic costs and benefits of conservation. PloS (Public Library of Science) Biology [online serial] 4(11):2153–2164.
   Web of Science ®Google Scholar
• Nelson, E., G. Mendoza, J. Regetz, S. Polasky, H. Tallis, D. R. Cameron, K. M. A. Chan, G. C. Daily, J. Goldstein, P. M. Kareiva, E. Lonsdorf, R. Naidoo, T. H. Ricketts, and M. R. Shaw. 2009. Modeling multiple ecosystem services, biodiversity conservation, commodity production, and tradeoffs at landscape scales. Frontiers in Ecology and the Environment 7:4–11.
   Web of Science ®Google Scholar
• Olcott, P. G. 1992. Groundwater atlas of the United States: Iowa, Michigan, Minnesota, Wisconsin. U.S. Geological Survey, Reston, Virginia.
   Google Scholar
• Page, L. M., and B. M. Burr. 1991. A field guide to freshwater fishes: North America north of Mexico. Houghton Mifflin, New York.
   Google Scholar
• Peterson, B. J., L Deegan, J. Helfrich, J. E. Hobbie, M. Hullar, B. Moller, T. E. Ford, A. Hershey, A. Hiltner, G. Kipphut, M. A. Lock, D. M. Fiebig, V. McKinley, M. C. Miller, J. R. Vestal, R. Ventullo, and G. Volk. 1993. Biological responses of a tundra river to fertilization. Ecology 74:653–672.
   Web of Science ®Google Scholar
• Peterson, J. T., and T. J. Kwak. 1999. Modeling the effects of land use and climate change on riverine Smallmouth Bass. Ecological Applications 9:1391–1404.
   Web of Science ®Google Scholar
• Plessis, H., and M. Veelen. 1991. Water quality: salinization and eutrophication time series trends in South Africa. South African Journal of Science 87:11–16.
   Web of Science ®Google Scholar
• Poff, N. L. 1997. Landscape filters and species traits: towards mechanistic understanding and prediction in stream ecology. Journal of the North American Benthological Society 16:391–409.
   Web of Science ®Google Scholar
• Pritt, J. J., M. R. DuFour, C. M. Mayer, P. M. Kocovsky, J. T. Tyson, E. J. Weimer, C. S. Vandergoot. 2013. Including independent estimates and uncertainty to quantify total abundance of fish migrating in a large river system: Walleye (Sander vitreus) in the Maumee River, Ohio. Canadian Journal of Fisheries and Aquatic Sciences 70:803–814.
   Web of Science ®Google Scholar
• R Development Core Team. 2013. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna.
   Google Scholar
• Rahel, F. J., and W. A. Hubert. 1991. Fish assemblages and habitat gradients in a RockyMountain–Great Plains stream: biotic zonation and additive patterns of community change. Transactions of the American Fisheries Society 120:319–332.
   Web of Science ®Google Scholar
• Randall, R. G., J. R. M. Kelso, and C. K. Minns. 1995. Fish production in fresh waters: are rivers more productive than lakes? Canadian Journal of Fisheries and Aquatic Sciences 52:631–643.
   Web of Science ®Google Scholar
• Seelbach, P. W., and M. J. Wiley. 1997. Overview of the Michigan rivers inventory (MRI) project. Michigan Department of Natural Resources, Fisheries Technical Report 97-3, Ann Arbor.
   Google Scholar
• Seppelt, R., C. F. Dormann, F. V. Eppink, S. Lautenbach, and S. Schmidt. 2011. A quantitative review of ecosystem service studies: approaches, shortcomings and the road ahead. Journal of Applied Ecology 48:630–636.
   Web of Science ®Google Scholar
• Slaney, P. A., B. R. Ward, and J. C. Wightman. 2003. Experimental nutrient addition to the Keogh River and application to the Salmon River in coastal British Columbia. Pages 111–126 in J. G. Stockner, editor. Nutrients in salmonid ecosystems: sustaining production and biodiversity. American Fisheries Society, Symposium 34, Bethesda, Maryland.
   Google Scholar
• Slavik, K., B. J. Peterson, L. A. Deegan, W. B. Bowden, A. E. Hershey, and J. E. Hobbie. 2004. Long-term responses of the Kuparuk River ecosystem to phosphorus fertilization. Ecology 85:939–954.
   Web of Science ®Google Scholar
• Smith, R. A., R. B. Alexander, and G. E. Schwarz. 2003. Natural background concentrations of nutrients in streams and rivers of the conterminous United States. Environmental Science and Technology 37:3039–3047.
   PubMed Web of Science ®Google Scholar
• Smith, V. H., G. D. Tilman, and J. C. Nekola. 1999. Eutrophication: impacts of excess nutrient inputs on freshwater, marine, and terrestrial ecosystems. Environmental Pollution 100:179–196.
   PubMed Web of Science ®Google Scholar
• Snieszko, S. F. 1974. Effects of environmental stress on outbreaks of infectious diseases of fishes. Journal of Fish Biology 6:197–208.
   Web of Science ®Google Scholar
• Southwick Associates. 2007. Sportfishing in America: an economic engine and conservation powerhouse. American Sportfishing Association, Alexandria, Virginia.
   Google Scholar
• Sowa, S. P., and C. F. Rabeni. 1995. Regional evaluation of the relation of habitat to distribution and abundance of Smallmouth Bass in Missouri streams. Transactions of the American Fisheries Society 124:240–251.
   Web of Science ®Google Scholar
• Stanfield, L. W., S. F. Gibson, and J. A. Borwick. 2006. Using a landscape approach to identify the distribution and density patterns of salmonids in Lake Ontario tributaries. Pages 601–621 in R. M. Hughes, L. Wang, and P. W. Seelbach, editors. Landscape influences on stream habitats and biological assemblages. American Fisheries Society, Symposium 48, Bethesda, Maryland.
   Google Scholar
• Steen, P. J., T. G. Zorn, P. W. Seelbach, and J. S. Schaeffer. 2008. Classification tree models for predicting distributions of Michigan stream fish from landscape variables. Transactions of the American Fisheries Society 137:976–996.
   Web of Science ®Google Scholar
• Stevenson, R. J., B. H. Hill, A. T. Herlihy, L. L. Yuan, and S. B. Norton. 2008. Algae-P relationships, thresholds, and frequency distributions guide nutrient criterion development. Journal of the North American Benthological Society 27:783–799.
   Web of Science ®Google Scholar
• Stoneman, C. L., and M. L. Jones. 2000. The influence of habitat features on the biomass and distribution of three species of southern Ontario stream salmonines. Transactions of the American Fisheries Society 129:639–657.
   Web of Science ®Google Scholar
• Stranko, S. A., R. H. Hilderbrand, R. P. Morgan II, M. W. Staley, A. J. Becker, A. Roseberry-Lincoln, E. S. Perry, and P. T. Jacobson. 2008. Brook Trout declines with land cover and temperature changes in Maryland. North American Journal of Fisheries Management 28:1223–1232.
   Web of Science ®Google Scholar
• Stuber, R. J., G. Gebhart, and O. E. Maughan. 1982a. Habitat suitability index models: Bluegill. U.S. Fish and Wildlife Service FWS/OBS-82/10.8.
   Google Scholar
• Stuber, R. J., G. Gebhart, and O. E. Maughan. 1982b. Habitat suitability index models: Largemouth Bass. U.S. Fish and Wildlife Service FWS/OBS-82/10.16.
   Google Scholar
• Tallis, H., and S. Polasky. 2009. Mapping and valuing ecosystem services as an approach for conservation and natural resource management. Annals of the New York Academy of Sciences 1162:265–283.
   Google Scholar
• Theil, H. 1961. Economic forecasts and policy. North-Holland, Amsterdam.
   Google Scholar
• Troy, A., and M. A. Wilson. 2006. Mapping ecosystem services: practical challenges and opportunities in linking GIS and value transfer. Ecological Economics 60:435–449.
   Web of Science ®Google Scholar
• USEPA (U.S. Environmental Protection Agency). 1996. National nutrient assessment workshop proceedings. USEPA, Office of Water, Washington, D.C.
   Google Scholar
• USEPA (U.S. Environmental Protection Agency). 2000. Nutrient criteria technical guidance manual: rivers and streams. USEPA, Office of Water, Washington, D.C.
   Google Scholar
• USEPA (U.S. Environmental Protection Agency) and USGS (U.S. Geological Survey). 2005. National Hydrography Dataset Plus (NHDPlus) version 1.0. USEPA, Washington, D.C. Available: http://www.horizon-systems.com/nhdplus/. (February 2015).
   Google Scholar
• Vannote, R. L., G. W. Minshall, K. W. Cummins, J. R. Sedell, and C. E. Cushing. 1980. River continuum concept. Canadian Journal of Fisheries and Aquatic Sciences 37:130–137.
   Web of Science ®Google Scholar
• Waite, I. R., and K. D. Carpenter. 2000. Associations among fish assemblage structure and environmental variables in Willamette basin streams, Oregon. Transactions of the American Fisheries Society 129:754–770.
   Web of Science ®Google Scholar
• Wehrly, K. E., M. J. Wiley, and P. W. Seelbach. 2003. Classifying regional variation in thermal regime based on stream fish community patterns. Transactions of the American Fisheries Society 132:18–38.
   Web of Science ®Google Scholar
• Welch, E. B., J. M. Quinn, and C. W. Hickey. 1992. Periphyton biomass related to point-source nutrient enrichment in seven New Zealand streams. Water Resources 26:669–675.
   Google Scholar
• Wenger, S. J., and M. C. Freeman. 2008. Estimating species occurrence, abundance, and detection probability using zero-inflated distributions. Ecology 89:2953–2959.
   PubMed Web of Science ®Google Scholar
• Wiley, M. J., S. L. Kohler, and P. W. Seelbach. 1997. Reconciling landscape and local views of aquatic communities: lessons from Michigan trout streams. Freshwater Biology 37:133–148.
   Web of Science ®Google Scholar
• Wiley, M. J., L. L. Osborne, and R. W. Larimore. 1990. Longitudinal structure of an agricultural prairie river system and its relationship to current stream ecosystem theory. Canadian Journal of Fisheries and Aquatic Sciences 47:373–384.
   Web of Science ®Google Scholar
• Zippin, C. 1958. The removal method of population estimation. Journal of Wildlife Management 22:82–90.
   Google Scholar
• Zorn, T., P. W. Seelbach, and M. J. Wiley. 1998. Patterns in the distributions of stream fishes in Michigan's Lower Peninsula. Michigan Department of Natural Resources, Fisheries Research Report 2035, Ann Arbor.
   Google Scholar
• Zorn, T., and M. J. Wiley. 2004. Untangling relationships between river habitat and fishes in Michigan's Lower Peninsula with covariance structure analysis. Michigan Department of Natural Resources, Fisheries Research Report 2073, Ann Arbor.
   Google Scholar
• Zorn, T. G., P. W. Seelbach, and M. J. Wiley. 2002. Distributions of stream fishes and their relationship to stream size and hydrology in Michigan's Lower Peninsula. Transactions of the American Fisheries Society 131:70–85.
   Web of Science ®Google Scholar
• Zorn, T. G., P. W. Seelbach, and M. J. Wiley. 2004. Utility of species-specific, multiple linear regression models for prediction of fish assemblages in rivers of Michigan's Lower Peninsula. Michigan Department of Natural Resources, Fisheries Division, Research Report 2072, Lansing.
   Google Scholar
• Zorn, T. G., P. W. Seelbach, and M. J. Wiley. 2009. Relationships between habitat and fish density in Michigan streams. Michigan Department of Natural Resources, Fisheries Research Report 2091, Ann Arbor.
   Google Scholar
• Zorn, T. G., and M. J. Wiley. 2006. Influence of landscape characteristics on local habitat and fish biomass in streams of Michigan's Lower Peninsula. Pages 375–393 in R. M. Hughes, L. Wang, and P. W. Seelbach, editors. Landscap influences on stream habitats and biological assemblages. American Fisheries Society, Symposium 48, Bethesda, Maryland.
   Google Scholar