The Influence of Size at Release on Performance of Imnaha River Chinook Salmon Hatchery Smolts

References

• Anderson, R.O., and R. M. Neumann. 1996. Length, weight, and associated structural indices. Pages 447–482 in B. R. Murphy and D. W. Willis, editors. Fisheries techniques, 2nd edition. American Fisheries Society, Bethesda, Maryland.
   Google Scholar
• Banks, J. L. 1994. Raceway density and water flow as factors affecting spring Chinook Salmon (Oncorhynchus tshawytscha) during rearing and after release. Aquaculture 119:201–217.
   Web of Science ®Google Scholar
• Barnes, M. E., M. M. Wipf, N. R. Domenici, W. M. Kummer, and R. P. Hanten. 2013. Decreased hatchery rearing density improves poststocking harvest and return to spawning of landlocked fall Chinook Salmon. North American Journal of Aquaculture 75:244–250.
   Web of Science ®Google Scholar
• Beacham, T. D., and C. B. Murray. 1993. Fecundity and egg size variation in North American Pacific salmon (Oncorhynchus). Journal of Fish Biology 42:485–508.
   Web of Science ®Google Scholar
• Beckman, B. R., W. W. Dickhoff, W. S. Zaugg, C. Sharpe, S. Hirtzel, R. Schrock, D. A. Larsen, R. D. Ewing, A. Palmisano, C. B. Schreck, and C. V. W. Mahnken. 1999. Growth, smoltification, and smolt-to-adult return of spring Chinook Salmon from hatcheries on the Deschutes River, Oregon. Transactions of the American Fisheries Society 128:1125–1150.
   Web of Science ®Google Scholar
• Beckman, B. R., D. A. Larsen, B. Lee-Pawlak, and W. W. Dickhoff. 1998. Relation of fish size and growth rate to migration of spring Chinook Salmon smolts. North American Journal of Fisheries Management 18:537–546.
   Google Scholar
• Bilton, H. T. 1984. Returns of Chinook Salmon in relation to juvenile size at release. Canadian Technical Report of Fisheries and Aquatic Sciences 1245.
   Google Scholar
• Brannon, E. L., D. F. Amend, M. A. Cronin, J. E. Lannan, S. LaPatra, W. J. McNeil, R. E. Noble, C. E. Smith, A. J. Talbot, G. A. Wedemeyer, and H. Westers. 2004. The Controversy about salmon hatcheries. Fisheries 29(9):12–31.
   Web of Science ®Google Scholar
• Buchanan, R. A., J. R. Skalski, and S. G. Smith. 2006. Estimating the effects of smolt transportation from different vantage points and management perspectives. North American Journal of Fisheries Management 26:460–472.
   Web of Science ®Google Scholar
• Budy, P., G. P. Thiede, N. Bouwes, C. E. Petrosky, and H. Schaller. 2002. Evidence linking delayed mortality of Snake River salmon to their earlier hydrosystem experience. North American Journal of Fisheries Management 22:35–51.
   Web of Science ®Google Scholar
• Carlson, S. M., T. P. Quinn, and A. P. Hendry. 2011. Eco-evolutionary dynamics in Pacific salmon. Heredity 106:438–447.
   PubMed Web of Science ®Google Scholar
• Carlson, S. M., and T. R. Seamons. 2008. A review of quantitative genetic components of fitness in salmonids: implications for adaptation to future change. Evolutionary Applications 1:222–238.
   PubMed Web of Science ®Google Scholar
• Carmichael, R. W., and R. T. Messmer. 1995. Status of supplementing Chinook Salmon natural production in the Imnaha River basin. Pages 285–291 in H. L. Schramm Jr. and R. G. Piper, editors. Uses and effects of cultured fishes in aquatic ecosystems. American Fisheries Society, Symposium 15, Bethesda, Maryland.
   Google Scholar
• Carmichael, R. W., R. T. Messmer, and M. W. Flesher. 1990. Oregon’s lower Snake River compensation plan program—a status review. Pages 13–51 in Snake River hatchery review, 1990 workshop summary. U.S. Fish and Wildlife Service, Boise, Idaho.
   Google Scholar
• Chilcote, M. W., M. R. Falcy, and K. W. Goodson. 2011. Reduced recruitment performance in natural populations of anadromous salmonids associated with hatchery-reared fish. Canadian Journal of Fisheries and Aquatic Sciences 68:511–522.
   Web of Science ®Google Scholar
• Claiborne, A. M., J. P. Fisher, S. A. Hayes, and R. L. Emmett. 2011. Size at release, size-selective mortality, and age of maturity of Willamette River hatchery yearling Chinook Salmon. Transactions of the American Fisheries Society 140:1135–1144.
   Web of Science ®Google Scholar
• Cormack, R. M. 1964. Estimates of survival from the sighting of marked animals. Biometrika 51:429–428.
   Web of Science ®Google Scholar
• Eddy, D., T. L. Hoffnagle, and R. W. Carmichael. 2014. Characteristics of natural and hatchery Imnaha River Chinook Salmon females spawned in captivity, 1983–2007 brood years. Oregon Department of Fish and Wildlife, Northeast–Central Oregon Fish Research and Monitoring, La Grande.
   Google Scholar
• Ewing, R. D., and S. K. Ewing. 1995. Review of the effects of rearing density on survival to adulthood for Pacific salmon. Progressive Fish-Culturist 57:1–25.
   Web of Science ®Google Scholar
• Fox, J. 2008. Applied regression analysis and generalized linear models, 2nd edition. Sage Publications, Thousand Oaks, California.
   Google Scholar
• Flagg, T. A., B. A. Berejikian, J. E. Colt, W. W. Dickhoff, L. W. Harrell, D. J. Maynard, C. E. Nash, M. W. Strom, R. N. Iwamoto, and C. V. W. Mahnken. 2000. Ecological and behavioral impacts of artificial production strategies on the abundance of wild salmon populations. NOAA Technical Memorandum NMFS-NWFSC-41.
   Google Scholar
• Flagg, T. A., and C. E. Nash, editors. 1999. A conceptual framework for conservation hatchery strategies for Pacific salmonids. NOAA Technical Memorandum NMFS-NWFSC-38.
   Google Scholar
• Fryer, J. L., and C. N. Lannan. 1993. The history and current status of Renibacterium salmoninarum, the causative agent of bacterial kidney disease in Pacific salmon. Fisheries Research 17:15–33.
   Web of Science ®Google Scholar
• Hatch, J., W. Young, I. Wilson, C. Camacho, and M. Pagano. 2014. Emigration of juvenile natural and hatchery Chinook Salmon (Nacó’x in Nez Perce) and steelhead (Héeyey in Nez Perce) from the Imnaha River, Oregon, 2010 (October 1, 2009, to August 31, 2010). Report to the Bonneville Power Administration, Project 1997-015-01, Portland, Oregon and the U.S. Fish and Wildlife Service, Lower Snake River Compensation Plan, Cooperative Agreement 14110-A-J013, Joseph, Oregon.
   Google Scholar
• Hankin, D. G., J. Fitzgibbons, and Y. Chen. 2009. Unnatural random mating policies select for younger age at maturity in hatchery Chinook Salmon (Oncorhynchus tshawytscha) populations. Canadian Journal of Fisheries and Aquatic Sciences 66:1505–1521.
   Web of Science ®Google Scholar
• Hankin, D. G., J. W. Nicholas, and T. W. Downey. 1993. Evidence for inheritance of age of maturity in Chinook Salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences 50:347–358.
   Web of Science ®Google Scholar
• Jolly, G. M. 1965. Explicit estimates from mark–recapture data with both death and immigration—stochastic model. Biometrika 52:225–247.
   PubMed Web of Science ®Google Scholar
• Kinnison, M. T., T. P. Quinn, and M. J. Unwin. 2011. Correlated contemporary evolution of life history traits in New Zealand Chinook Salmon, Oncorhynchus tshawytscha. Heredity 106:448–459.
   PubMed Web of Science ®Google Scholar
• Koenings, J. P., H. J. Geiger, and J. J. Hasbrouck. 1993. Smolt-to-adult survival patterns of Sockeye Salmon (Oncorhynchus nerka): effects of smolt length and geographic latitude when entering the sea. Canadian Journal of Fisheries and Aquatic Sciences 50:600–611.
   Web of Science ®Google Scholar
• Lichatowich, J. 1999. Salmon without rivers: a history of the Pacific salmon crisis. Island Press, Covelo, California.
   Google Scholar
• Martin, R. M., and A. Wertheimer. 1989. Adult production of Chinook Salmon reared at different densities and released as two smolt sizes. Progressive Fish-Culturist 51:194–200.
   Web of Science ®Google Scholar
• McMichael, G. A., J. R. Skalski, and K. A. Deters. 2011. Survival of juvenile Chinook Salmon during barge transport. North American Journal of Fisheries Management 31:1187–1196.
   Web of Science ®Google Scholar
• Monzyk, F. R., B. C. Jonasson, T. L. Hoffnagle, P. J. Keniry, R. W. Carmichael, and P. J. Cleary. 2009. Migration characteristics of hatchery and natural spring Chinook Salmon smolts from the Grande Ronde River basin, Oregon, to Lower Granite Dam on the Snake River. Transactions of the American Fisheries Society 138:1093–1108.
   Web of Science ®Google Scholar
• Morley, R. B., A. Y. Fedorenko, H. T. Bilton, and S. J. Lehmann. 1996. The effects of time and size at release on returns at maturity of Chinook Salmon from Quinsam River Hatchery, British Columbia, 1982 and 1983 releases. Canadian Technical Report of Fisheries and Aquatic Sciences 2105.
   Google Scholar
• Pinheiro, J., D. Bates, S. DebRoy, D. Sarkar, and R Development Core Team. 2015. nlme: linear and non-linear mixed-effects models (R package version 3.10-120). Available: http://CRAN.R-project.org/package=nlme. (February 2016).
   Google Scholar
• R Development Core Team. 2015. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna.
   Google Scholar
• Royston, P. 1982. An extension of Shapiro and Wilk’s W-test for normality to large samples. Applied Statistics 31:115–124.
   Web of Science ®Google Scholar
• Ruckelshaus, M. H., P. Levin, J. B. Johnson, and P. M. Kareiva. 2002. The Pacific salmon wars: what science brings to the challenge of recovering species. Annual Review of Ecology and Systematics 33:665–706.
   Google Scholar
• Sandell, T. A., D. J. Teel, J. Fisher, B. Beckman, and K. C. Jacobson. 2015. Infections by Renibacterium salmoninarum and Nanophyetus salmincola Chapin are associated with reduced growth of juvenile Chinook Salmon, Oncorhynchus tshawytscha (Walbaum), in the northeast Pacific Ocean. Journal of Fish Diseases 38:365–378.
   PubMed Web of Science ®Google Scholar
• Seber, G. A. F. 1965. A note on the multiple recapture census. Biometrika 52:249–259.
   PubMed Web of Science ®Google Scholar
• Scheuerell, M. D. 2005. Influence of juvenile size on the age at maturity of individually marked wild Chinook Salmon. Transactions of the American Fisheries Society 134:999–1004.
   Web of Science ®Google Scholar
• Scheuerell, M. D., and J. G. Williams. 2005. Forecasting climate-induced changes in the survival of Snake River spring/summer Chinook Salmon (Oncorhynchus tshawytscha). Fisheries Oceanography 14:448–457.
   Web of Science ®Google Scholar
• Spangenberg, D., D. A. Larsen, R. Gerstenberger, C. Brun, and B. R. Beckman. 2014. The effects of variation in rearing conditions on growth, smolt development, and minijack rate in yearling Chinook Salmon: a hatchery scale experiment. Transactions of the American Fisheries Society 143:1220–1230.
   Web of Science ®Google Scholar
• Sykes, G. E., C. J. Johnson, and J. M. Shrimpton. 2009. Temperature and flow effects on migration timing of Chinook Salmon smolts. Transactions of the American Fisheries Society 138:1252–1265.
   Web of Science ®Google Scholar
• Tattam, I. A., J. R. Ruzycki, J. L. McCormick, and R. W. Carmichael. 2015. Length and condition of wild Chinook Salmon smolts influence age at maturity. Transactions of the American Fisheries Society 144:1237–1248.
   Web of Science ®Google Scholar
• Tipping, J. M. 2011. Effect of juvenile length on Chinook Salmon survivals at four hatcheries in Washington State. North American Journal of Aquaculture 73:164–167.
   Web of Science ®Google Scholar
• Trushenski, J., L. Blankenship, J. Bowker, T. Flagg, J. Hesse, K. Leber, K. Lorenzen, D. MacKinlay, D. Maynard, C. Moffitt, V. Mudrak, K. Scribner, S. Stuewe, J. Sweka, G. Whelan, and C. Young-Dubovsky. 2014. AFS completes assessment, issues new guidance regarding hatchery operation and the use of hatchery-origin fish. Fisheries 39:537–547.
   Web of Science ®Google Scholar
• Warton, D. I., and F. K. C. Hui. 2010. The arcsine is asinine: the analysis of proportions in ecology. Ecology 92:3–10.
   Web of Science ®Google Scholar
• Williams, J. G., S. G. Smith, and W. D. Muir. 2001. Survival estimates for downstream migrant yearling juvenile salmonids through the Snake and Columbia rivers hydropower system, 1966–1980 and 1993–1999. North American Journal of Fisheries Management 21:310–317.
   Web of Science ®Google Scholar
• Zabel, R. W. 2002. Using “travel time” data to characterize the behavior of migrating animals. American Naturalist 159:372–387.
   PubMed Web of Science ®Google Scholar
• Zabel, R. W., and S. Achord. 2004. Relating size of juveniles to survival within and among populations of Chinook Salmon. Ecology 85:795–806.
   Web of Science ®Google Scholar