Biodiversity of indigenous tussock grassland sites in Otago, Canterbury and the central North Island of New Zealand III. Soil microorganisms

References

• Anderson , JPE and Domsch , KH . 1975 . Measurement of bacterial and fungal contributions to respiration of selected agricultural and forest soils . Canadian Journal of Microbiology , 21 : 314 – 322 .
   PubMed Web of Science ®Google Scholar
• Barratt , BIP , Ferguson , CM , Logan , RAS , Barton , D , Bell , NL , Sarathchandra , SU and Townsend , RJ . 2005 . Biodiversity of indigenous tussock grassland sites in Otago, Canterbury and the central North Island of New Zealand I. The macro‐invertebrate fauna . Journal of the Royal Society of New Zealand , 35 : 287 – 301 . (this issue)
   Web of Science ®Google Scholar
• Barron , GL . 1968 . The genera of Hyphomycetes from soil , Baltimore : Williams and Wilkins .
   Google Scholar
• Bell , NL , Davis , LT , Sarathchandra , SU , Barratt , BIP , Ferguson , CM and Townsend , RJ . 2005 . Biodiversity of indigenous tussock grassland sites in Otago, Canterbury and the central North Island of New Zealand. II. Nematodes . Journal of the Royal Society of New Zealand , 35 : 303 – 319 . (this issue)
   Web of Science ®Google Scholar
• Biolog 2000. http://www.biolog.com/pdf/eco_microplate_sell_sheet.pdf (http://www.biolog.com/pdf/eco_microplate_sell_sheet.pdf)
   Google Scholar
• Bolton , H , Frederickson , JK and Elliott , LF . 1992 . “ Microbial ecology of the rhizosphere ” . In Soil microbial ecology , Edited by: Metting , FB . 27 – 36 . New York : Marcel Dekker .
   Google Scholar
• Bowen , GD and Rovira , AD . 1991 . “ The rhizosphere—hidden half of the hidden half ” . In Plant roots—the hidden half , Edited by: Waisal , Y and Kafkafi , U . 641 – 649 . New York : Academic Press .
   Google Scholar
• Brookes , PC , Landman , A , Pruden , G and Jenkinson , DS . 1985 . Chloroform fumigation and the release of soil nitrogen: a rapid direct extraction method to measure microbial biomass nitrogen in soil . Soil Biology and Biochemistry , 17 : 837 – 842 .
   Web of Science ®Google Scholar
• Berg , P and Rosswall , T . 1985 . Ammonium oxidiser numbers, potential and actual oxidation rates in two Swedish arable soils . Biology and Fertility of Soils , 1 : 131 – 140 .
   Web of Science ®Google Scholar
• Burgess , LW and Summerell , BA . 1992 . Mycogeography of Fusarium: survey of Fusarium species from subtropical and semi arid grassland soils from Queensland, Australia . Mycological Research , 96 : 480 – 484 .
   Google Scholar
• Burgess , LW , Summerell , B A , Bullock , S , Gott , KP and Blackhouse , D . 1994 . Laboratory manual for Fusarium research , Sydney : University of Sydney .
   Google Scholar
• Carmichael , JW , Kendrick , WB , Connors , IL and Sigeler , L . 1980 . Genera of Hyphomycetes , Edmonton, , Canada : The University of Alberta Press .
   Google Scholar
• Colwell , RR , Clayton , RA , Ortiz‐Conde , BA , Jacobs , B and Russek‐Cohen , E . 1995 . “ The microbial species concept and biodiversity ” . In Microbial diversity and ecosystem function , Edited by: Allsop , D , Colwell , RR and Hawksworh , DL . 3 – 15 . Wallingford, , UK : CAB International .
   Google Scholar
• De Leij , FAAM , Whipps , JM and Lynch , JM . 1993 . The use of colony development for the characterisation of bacterial communities in soil and roots . Microbial Ecology , 27 : 81 – 97 .
   Web of Science ®Google Scholar
• Domsch , KH , Gams , W and Andereson , TH . 1980 . Compendium of soil fungi , London : Academic Press .
   Google Scholar
• Ellis , MB . 1971 . Dematiaceous Hyphomycetes , London : Commonwealth Mycological Institute .
   Google Scholar
• Felske , A , Wolternik , A , Van Lis , R , De Vos , WM and Akkermans , ADL . 2000 . Response of a soil bacterial community to grassland succession as monitored by 16S rRNA levels of the predominant ribotypes . Applied and Environmental Microbiology , 66 : 3998 – 4003 .
   PubMed Web of Science ®Google Scholar
• Gams , W . 1971 . Cephalosporium‐artige Schimmelpilze (Hyphomycetes) , Stuttgart, , Germany : Gustav Fischer Verlag .
   Google Scholar
• Ghani , A , Dexter , M and Perrott , KW . 2003 . Hot‐water extractable carbon in soils: a sensitive measurement for determining impacts of fertilisation, grazing and cultivation . Soil Biology and Biochemistry , 35 : 1231 – 1243 .
   Web of Science ®Google Scholar
• Garland , JL . 1996 . Patterns of potential C source utilization by rhizosphere communities . Soil Biology and Biochemistry , 28 : 223 – 230 .
   Web of Science ®Google Scholar
• Grayston , SJ , Griffith , GS , Mawdsley , JL , Campbell , CD and Bardgett , RD . 2001 . Accounting for variability in soil microbial communities of temperate upland grassland ecosystems . Soil Biology and Biochemistry , 33 : 533 – 551 .
   Web of Science ®Google Scholar
• Grayston , SJ , Wang , S , Campbell , CD and Edwards , AC . 1998 . Selective influence of plant species on microbial diversity in the rhizosphere . Soil Biology and Biochemistry , 30 : 369 – 378 .
   Web of Science ®Google Scholar
• Harch , BD , Correll , RL , Meech , W , Kirkby , CA and Pankhurst , CE . 1997 . Using the Gini coefficient with BIO‐LOG substrate utilisation data to provide an alternative quantitative measure for comparing bacterial soil communities . Journal of Microbiological Methods , 30 : 91 – 101 .
   Web of Science ®Google Scholar
• Hooper , DU , Bignell , DE , Brown , VK , Brussaard , L , Dangerfield , JM , Wall , DH , Wardle , DA , Coleman , DC , Giller , KE , Lavelle , P , Putten , WHVD , De Ruiter , PC , Rusek , J , Silver , WL , Tiedje , JM and Wolters , V . 2000 . Interactions between aboveground and belowground biodiversity in terrestrial ecosystems: patterns, mechanisms, and feedbacks . BioScience , 50 : 1049 – 1061 .
   Web of Science ®Google Scholar
• Jackson , RM . 1965a . Studies of fungi in pasture soils II. Fungi associated with plant debris and fungal hyphae in soil . New Zealand Journal of Agricultural Research , 8 : 865 – 877 .
   Google Scholar
• Jackson , RM . 1965b . Studies of fungi in pasture soils II. Physiological studies on some fungal isolates from the root surface and from organic debris . New Zealand Journal of Agricultural Research , 8 : 878 – 888 .
   Google Scholar
• Kent , AD and Triplett , EW . 2002 . Microbial communities and their interactions in soil and rhizosphere ecosystems . Annual Review of Microbiology , 56 : 211 – 236 .
   PubMed Web of Science ®Google Scholar
• King , EO , Ward , MK and Raney , DE . 1954 . Two simple media for the demonstration of pyocyanin and fluo‐rescein . Journal of Laboratory and Clinical Medicine , 44 : 301 – 307 .
   PubMed Web of Science ®Google Scholar
• King , GM . 2003 . Contributions of atmospheric CO and hydrogen uptake to microbial dynamics on recent Hawaiian volcanic deposits . Applied and Environmental Microbiology , 69 : 4067 – 4075 .
   PubMed Web of Science ®Google Scholar
• Latour , X , Corberand , T , Laguerre , G , Allard , F and Lemanceau , P . 1996 . The composition of fluorescent pseudomonad populations associated with roots is influenced by plant and soil type . Applied and Environmental Microbiology , 62 : 2449 – 2456 .
   PubMed Web of Science ®Google Scholar
• Lemanceau , P , Corberand , T , Gardan , L , Latour , X , Laguerre , G , Boeufgras , J and Alabouvette , C . 1995 . Effect of two plant species, flax (Linum usitatissinum L.) and tomato (Lycopersicon esculentum Mill.), on the diversity of soilborne populations of fluorescent pseudomonads . Applied and Environmental Microbiology , 61 : 1004 – 1012 .
   PubMed Web of Science ®Google Scholar
• Lockhead , AG and Chase , FE . 1943 . Qualitative studies of soil microorganisms. V. Nutritional requirements of the predominant bacterial flora . Soil Science , 55 : 185 – 195 .
   Google Scholar
• Lynch , JM and Whipps , JM . 1990 . Substrate flow in the rhizosphere . Plant and Soil , 129 : 1 – 10 .
   Web of Science ®Google Scholar
• Maria , GL and Sridhar , KR . 2002 . Richness and diversity of filamentous fungi on woody litter of mangroves along the west coast of India . Current Science , 83 : 1573 – 1580 .
   Web of Science ®Google Scholar
• Mark , AF . 1993 . “ Indigenous grasslands of New Zealand ” . In Ecosystems of the world 8B ‐ natural grasslands—Eastern Hemisphere resume , Edited by: Coupland , RT . Amsterdam : Elsevier .
   Google Scholar
• Martin , JK . 1971 . 14C‐labelled material leached from the rhizosphere of plants supplied with 14CO2 . Australian Journal of Biological Sciences , 24 : 1131 – 1142 .
   Google Scholar
• McCaig , AE , Glover , LA and Prosser , JI . 1999 . Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures . Applied and Environmental Microbiology , 65 : 1721 – 1730 .
   PubMed Web of Science ®Google Scholar
• Morrison , TM , Ross , DJ and Thornton , RH . 1959 . Plant pathogenicity studies with non‐sporing fungi from tussock‐grassland soils . New Zealand Journal of Agricultural Research , 2 : 870 – 873 .
   Google Scholar
• Muller , AK , Westergaard , K , Christensen , S and Sorensen , SJ . 2001 . The effect of long‐term mercury pollution on the soil microbial community . FEMS Microbiology Ecology , 36 : 11 – 19 .
   PubMed Web of Science ®Google Scholar
• O'Callaghan , M , Jackson , TA and Mahanty , HK . 1992 . Selection, development and testing of phage resistant strains of Serratia entomophila for grass grub control . Biocontrol Science and Technology , 2 : 297 – 305 .
   Web of Science ®Google Scholar
• O'Flaherty , SM , Hirsch , PR and Kerry , BR . 2003 . The influence of the root‐knot nematode Meloidogyne incognita, the nematicide aldicarb and the nematophagous fungus Pochonia chlamydosporia on heterotrophic bacteria in soil and the rhizosphere . European Journal of Soil Science , 54 : 759 – 766 .
   Google Scholar
• Pitt , JI . 1979 . The genus Penicillium and its telemorphic states Eupenicillium and Talaromyces , London : Academic Press .
   Google Scholar
• Radl , V , Pritsch , K , Munch , JC and Schloter , M . 2005 . Structural and functional diversity of microbial com munities from a lake sediment contaminated with trenbolone, an endocrine‐disrupting chemical . Environmental Pollution , 137 : 345 – 353 .
   PubMed Web of Science ®Google Scholar
• Rosenzweig , ML . 1995 . Species diversity in space and time , New York, , USA : Cambridge University Press .
   Google Scholar
• Ross , DJ . 1958 . Biological studies of some tussock grassland soils VI. Nitrifying activities . New Zealand Journal of Agricultural Research , 1 : 968 – 973 .
   Google Scholar
• Ross , DJ . 1960 . Biological studies of some tussock grassland soils XVII. Nitrifying activities of two cultivated soils . New Zealand Journal of Agricultural Research , 3 : 230 – 236 .
   Google Scholar
• Ross , DJ , Orchard , VA and Rhoades , DA . 1984 . Temporary fluctuations in biochemical properties of soil under pasture: 1. Respiratory activity and microbial biomass . Australian Journal of Soil Research , 22 : 303 – 317 .
   Web of Science ®Google Scholar
• Ross , DJ , Tate , KR , Cairns , A and Pansier , EA . 1980 . Microbial biomass estimations in soils from tussock grasslands by three biochemical procedures . Soil Biology and Biochemistry , 12 : 375 – 383 .
   Web of Science ®Google Scholar
• Sands , DC and Rovira , AD . 1970 . Isolation of fluorescent pseudomonads with a selective medium . Applied Microbiology , 20 : 513 – 514 .
   PubMedGoogle Scholar
• Sarathchandra , SU . 1979 . A simplified method for estimating ammonium oxidising bacteria . Plant and Soil , 52 : 305 – 309 .
   Web of Science ®Google Scholar
• Sarathchandra , SU , Burch , G and Cox , NR . 1997 . Growth patterns of bacterial communities in the rhizoplane and rhizosphere of white clover (Trifolium repens L.) and perennial ryegrass (Lolium perenne L.) in long‐term pasture . Applied Soil Ecology , 6 : 293 – 299 .
   Web of Science ®Google Scholar
• Sarathchandra , SU , Ghani , A , Yeates , GW , Burch , G and Cox , NR . 2001 . Effect of nitrogen and phosphate fertilisers on microbial and nematode diversity in pasture soils . Soil Biology and Biochemistry , 33 : 953 – 964 .
   Web of Science ®Google Scholar
• Sarathchandra , SU , Perrott , KW , Boase , MR and Waller , JE . 1988 . Seasonal changes and the effects of fertiliser on some chemical, biochemical and microbiological characteristics of high‐producing pastoral soil . Biology and Fertility of Soils , 6 : 328 – 335 .
   Web of Science ®Google Scholar
• Sarathchandra , SU , Perrott , KW and Upsdell , MP . 1984 . Microbiological and biochemical characteristics of a range of New Zealand soils under established pasture . Soil Biology and Biochemistry , 16 : 177 – 183 .
   Web of Science ®Google Scholar
• Sato , A and Seto , M . 2000 . Fungal or bacterial biomass in a volcanic soil with various land uses and soil treatments . Soil Microorganisms , 54 : 23 – 30 .
   Google Scholar
• Skipp , RA . Fungal root pathogens in pasture soils, and effects of fungicides . Proceedings of the 39th New Zealand Weed and Pest Control Conference . pp. 60 – 64 .
   Google Scholar
• Starr , MP , Grimont , PA , Grimont , F and Starr , PB . 1976 . Caprylate‐thallous agar medium for selectively isolating Serratia and its utility in the clinical laboratory . Journal of Clinical Microbiology , 4 : 270 – 276 .
   PubMed Web of Science ®Google Scholar
• Stevenson , IL and Rouatt , JW . 1953 . Qualitative studies of soil microorganisms XI. Further observations on the nutritional classification of bacteria . Canadian Journal of Botany , 31 : 438 – 447 .
   Google Scholar
• Stout , JD . 1958 . Biological studies of some tussock grassland soils IV. Bacteria . New Zealand Journal of Agricultural Research , 1 : 943 – 957 .
   Google Scholar
• Stout , JD . 1960 . Biological studies of some tussock grassland soils XV. Bacteria of two cultivated soils . New Zealand Journal of Agricultural Research , 3 : 214 – 223 .
   Google Scholar
• Teather , RM and Wood , PJ . 1982 . Use of congo red‐polysaccharide interactions in enumeration and charac terisation of cellulolytic bacteria from the bovine rumen . Applied and Environmental Microbiology , 43 : 777 – 780 .
   PubMed Web of Science ®Google Scholar
• Thornton , RH . 1958 . Biological studies of some tussock grassland soils II. Fungi . New Zealand Journal of Agricultural Research , 1 : 922 – 938 .
   Google Scholar
• Thornton , RH . 1960 . Biological studies of some tussock grassland soils XII. Fungi of two cultivated soils . New Zealand Journal of Agricultural Research , 3 : 203 – 206 .
   Google Scholar
• Tilman , D and Pacala , S . 1993 . “ The maintenance of species richness in plant communities ” . In Species diversity in ecological communities. Historical and geographical perspectives , Edited by: Ricklefs , RE and Schluter , D . Chicago, Illinois, , USA : University of Chicago Press .
   Google Scholar
• Topp , E . 2003 . Bacteria in agricultural soils. Diversity, role and future perspectives . Canadian Journal of Soil Science , 83 : 303 – 309 .
   Google Scholar
• Van Bruggen , AHC . 1995 . Plant disease severity in high‐input compared to reduced‐input and organic farming systems . Plant Disease , 79 : 976 – 984 .
   Web of Science ®Google Scholar
• Vance , ED , Brookes , PC and Jenkinson , DS . 1987 . An extraction method for measuring soil microbial biomass C . Soil Biology and Biochemistry , 19 : 703 – 707 .
   Web of Science ®Google Scholar
• Visser , S and Parkinson , D . 1992 . Soil biological criteria as indicators of soil quality: soil microorganisms . American Journal of Alternative Agriculture , 7 : 33 – 37 .
   Google Scholar
• Waipara , NW . 1997 . A study of the taxonomy and pathogenicity of microfungi in the roots of Waikato pas ture plants , 375 Canterbury, , New Zealand : University of Canterbury . Unpublished PhD thesis
   Google Scholar
• Waipara , NW and di Menna , ME . Utilisation of population patterns and pathogenicity of soilborne root‐colonising Fusarium and Cylindrocarpon species as bioindicators of soil health in agriculturally disturbed soils . 7th International Mycological Congress Abstracts . pp. 185
   Google Scholar
• Wardle , DA . 1992 . A comparative assessment or factors which influence microbial biomass carbon and nitrogen levels in soil . Biological Reviews , 67 : 321 – 358 .
   Web of Science ®Google Scholar
• Wardle , DA and Ghani , A . 1995 . Why is the strength of relationships between pairs of methods for estimating soil microbial biomass often so variable? . Soil Biology and Biochemistry , 27 : 821 – 828 .
   Web of Science ®Google Scholar
• Wardle , D , Bardgett , R , Klironomos , JN and Setala , H . 2004 . Ecological linkages between above ground and belowground biota . Science , 304 : 1629 – 1633 .
   PubMed Web of Science ®Google Scholar
• Wardle , DA , Yeates , GW , Williamson , W and Bonner , KI . 2003 . The response of a three trophic level soil food web to the identity and diversity of plant species and functional groups . Oikos , 102 : 45 – 56 .
   Web of Science ®Google Scholar
• Whipps , JM . 1990 . “ Carbon economy ” . In The rhizosphere Edited by: Lynch , JM . 59 – 97 . Essex
   Google Scholar
• Woledge , J , Davidson , K and Dennis , WD . 1992 . Growth and photosynthesis oftall and short cultivars of white clover with tall and short grasses . Grass and Forage Science , 47 : 230 – 238 .
   Google Scholar
• Zak , JC and Visser , S . 1996 . An appraisal of soil fungal biodiversity: the crossroads between taxonomic and functional biodiversity . Biodiversity and Conservation , 5 : 169 – 183 .
   Web of Science ®Google Scholar
• Zak , JC , Willig , MR , Moorhead , DL and Wildman , HG . 1994 . Functional diversity of microbial communities: a quantitative approach . Soil Biology and Biochemistry , 26 : 1101 – 1108 .
   Web of Science ®Google Scholar
• AgResearch Ltd, Ruakura Research Centre, Private Bag 3123, Hamilton, New Zealand. [email protected]
   Google Scholar
• Landcare Research, Private Bag 92 170, Auckland, New Zealand.
   Google Scholar
• AgResearch Ltd, Lincoln, P.O. Box 60, Lincoln, New Zealand.
   Google Scholar
• AgResearch Ltd, Invermay Research Centre, Private Bag 50 034, Mosgiel, New Zealand.
   Google Scholar