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Research Paper

Evaluating mtDNA patterns of genetic isolation using a re-sampling procedure: A case study on Italian populations

ORCID Icon, , , , &
Pages 140-148 | Received 13 Apr 2015, Accepted 15 Mar 2016, Published online: 15 May 2016

References

  • Arcos-Burgos M, Muenke M. 2002. Genetics of population isolates. Clin Genet 61:233–247.
  • Babalini C, Martinez-Labarga C, Tolk HV, Kivisild T, Giampaolo R, Tarsi T, Contini I, et al. 2005. The population history of the Croatian linguistic minority of Molise (Southern Italy): a maternal view. Eur J Hum Genet 13:902–912.
  • Beja-Pereira A, Caramelli D, Lalueza-Fox C, Vernesi C, Ferrand N, Casoli A, Goyache F, et al. 2006. The origin of European cattle: evidence from modern and ancient DNA. Proc Natl Acad Sci USA 103:8113–8118.
  • Boattini A, Griso C, Pettener D. 2011. Are ethnic minorities synonymous for genetic isolates? Comparing Walser and Romance populations in the Upper Lys Valley (Western Alps). J Anthropol Sci 89:161–173.
  • Bosch E, Calafell F, González-Neira A, Flaiz C, Mateu E, Scheil HG, Huckenbeck W, et al. 2006. Paternal and maternal lineages in the Balkans show a homogeneous landscape over linguistic barriers, except for the isolated Aromuns. Ann Hum Genet 70:459–487.
  • Brandstätter A, Egyed B, Zimmermann B, Duftner N, Padar Z, Parson W. 2007. Migration rates and genetic structure of two Hungarian ethnic groups in Transylvania, Romania. Ann Hum Genet 71:791–803.
  • Brisighelli F, Álvarez-Iglesias V, Fondevila M, Blanco-Verea A, Carracedo A, Pascali VL, Capelli C, Salas A. 2012. Uniparental markers of contemporary Italian population reveals details on its pre-Roman heritage. PLoS One 7:e50794.
  • Calò CM, Corrias L, Vona G, Bachis V, Robledo R. 2012. Sampling strategies in a linguistic isolate: results from mtDNA analysis. Am J Hum Biol 24:192–194.
  • Capocasa M, Anagnostou P, Bachis V, Battaggia C, Bertoncini S, Biondi G, Boattini A, et al. 2014. Linguistic, geographic and genetic isolation: a collaborative study of Italian populations. J Anthropol Sci 92:201–231.
  • Capocasa M, Battaggia C, Anagnostou P, Montinaro F, Boschi I, Ferri G, Alu M, et al. 2013. Detecting genetic isolation in human populations: a study of European language minorities. PLoS One 8:e56371.
  • Charlesworth D, Wright SI. 2001. Breeding systems and genome evolution. Curr Opin Genet Dev 11:685–690.
  • Cilli E, Delaini P, Costazza B, Giacomello L, Panaino A, Gruppioni G. 2011. Ethno-anthropological and genetic study of the Yaghnobis; an isolated community in Central Asia. A preliminary study. J Anthropol Sci 89:189–194.
  • Coia V, Boschi I, Trombetta F, Cavulli F, Montinaro F, Destro Bisol G, Grimaldi S, Pedrotti A. 2012. Evidence of high genetic variation among linguistically diverse populations on a micro-geographic scale: a case study of the Italian Alps. J Hum Genet 57:254–260.
  • Coia V, Capocasa M, Anagnostou P, Pascali V, Scarnicci F, Boschi I, Battaggia C, et al. 2013. Demographic histories, isolation and social factors as determinants of the genetic structure of Alpine linguistic groups. PLoS One 8:e81704.
  • Congiu A, Anagnostou P, Milia N, Capocasa M, Montinaro F, Destro Bisol G. 2012. Online databases for mtDNA and Y chromosome polymorphisms in human populations. J Anthropol Sci 90:201–215.
  • Depaulis F, Mousset S, Veuille M. 2005. Detecting selective sweeps with haplotype tests. In: Nurminsky D, editor. Selective sweep. Georgetown: Landes Bioscience. p 34.
  • Destro Bisol G, Anagnostou P, Batini C, Battaggia C, Bertoncini S, Bottini A, Caciagli L, et al. 2008. Italian isolates today: geographic and linguistic factors shaping human biodiversity. J Anthropol Sci 86:179–188.
  • Esko T, Mezzavilla M, Nelis M, Borel C, Debniak T, Jakkula E, Julia A, et al. 2013. Genetic characterization of northeastern Italian population isolates in the context of broader European genetic diversity. Eur J Hum Genet 21:659–665.
  • Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour 10:564–567.
  • Falchi A, Giovannoni L, Calò CM, Piras SI, Moral P, Paoli G, Vona G, Varesi L. 2006. Genetic history of some western Mediterranean human isolates through mtDNA HVRI polymorphisms. J Hum Genet 51:9–14.
  • Fernandes AT, Velosa R, Jesus J, Carracedo A, Brehm A. 2003. Genetic differentiation of the Cabo Verde archipelago population analysed by STR polymorphisms. Ann Hum Genet 67:34034–34037.
  • Fu YX. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking and backgroud selection. Genetics 147:915–925.
  • ISTAT 2011. Bilancio Demografico [Internet]. Rome: Istituto Nazionale di Statistica; [cited 2011]. Available from: http://demo.istat.it.
  • Kalinowski ST. 2005. Do polymorphic loci require large sample sizes to estimate genetic distances? Heredity 94:33–36.
  • Laland KN, Odling-Smee J, Myles S. 2010. How culture shaped the human genome: bringing genetics and the human sciences together. Nat Rev Genet 11:137–148.
  • Lauc T, Rudan P, Rudan I, Campbell H. 2003. Effect of inbreeding and endogamy on occlusal traits in human isolates. J Orthod 30:301–308.
  • Messina F, Finocchio A, Rolfo MF, De Angelis F, Rapone C, Coletta M, Martínez-Labarga C, et al. 2015. Traces of forgotten historical events in mountain communities in Central Italy: a genetic insight. Am J Hum Biol 27:508–519.
  • Messina F, Scorrano G, Labarga CM, Rolfo MF, Rickards O. 2010. Mitochondrial DNA variation in an isolated area of Central Italy. Ann Hum Biol 37:385–402.
  • Montinaro F, Boschi I, Trombetta F, Merigioli S, Anagnostou P, Battaggia C, Capocasa M, et al. 2012. Using forensic microsatellites to decipher the genetic structure of linguistic and geographic isolates: a survey in the eastern Italian Alps. Forensic Sci Int Genet 6:827–833.
  • Neel J. 1992. Minority populations as genetic isolates: the interpretation of inbreeding results. In: Bittles AH, Roberts DF, editors. Minority populations: genetics demography and health. London: The MacMillan Press. p 1.
  • Nei M. 1987. Molecular evolutionary genetics. New York: Columbia University Press.
  • Peltonen L, Palotie A, Lange K. 2000. Use of population isolates for mapping complex traits. Nat Rev Genet 1:182–190.
  • Pichler I, Mueller JC, Stefanov SA. De Grandi A, Beu Volpato C, Pinggera GK, Mayr A, et al. 2006. Genetic structure in contemporary South Tyrolean isolated populations revealed by analysis of Y-chromosome, mtDNA and Alu polymorphisms. Hum Biol 78:441–464.
  • Ramírez-Soriano A, Ramos-Onsins SE, Rozas J, Calafell F, Navarro A. 2008. Statistical power analysis of neutrality tests under demographic expansions, contractions and bottlenecks with recombination. Genetics 179:555–567.
  • Ramos-Onsins SE, Rozas J. 2002. Statistical properties of new neutrality tests against population growth. Mol Biol Evol 19:2092–2100.
  • Reynolds J, Weir BS, Cockerham CC 1983. Estimation of the coancestry coefficient: basis for a short-term genetic distance. Genetics 105:767–779.
  • Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW. 2002. Genetic structure of human populations. Science 298:2381–2385.
  • Schierup MH, Charlesworth D, Vekemans X. 2000. The effect of hitch-hiking on genes linked to a balanced polymorphism in a subdivided population. Genet Res 76:63–73.
  • Thomas MG, Barnes I, Weale ME, Jones AL, Forster P, Bradman N, Pramstaller P. 2008. New genetic evidence support isolation and drift in the Ladin communities of the South Tyrolean Alps but not an ancient origin in the Middle East. Eur J Hum Genet 16:124–134.
  • Tishkoff SA, Kidd KK. 2004. Implications of biogeography of human populations for 'race' and medicine. Nat Genet 36:S21–S27.
  • Tolk HV, Pericić M, Barać L, Klarić IM, Janićijević B, Rudan I, Parik J, et al. 2001. MtDNA haplogroups in the populations of Croatian Adriatic Islands. Coll Anthropol 24:267–280.
  • Toso F. 2008. Le minoranze linguistiche in Italia. Bologna: Il Mulino.
  • Toso F. 2014. The study of language islands: an interdisciplinary approach. J Anthropol Sci 92:I–IV.
  • van Oven M, Hämmerle JM, van Schoor M, Kushnick G, Pennekamp P, Zega I, Lao O, Brown L, et al. 2011. Unexpected island effects at an extreme: reduced Y chromosome and mitochondrial DNA diversity in Nias. Mol Biol Evol 28:1349–1361.
  • Varilo T, Peltonen L. 2004. Isolates and their potential use in complex gene mapping efforts. Curr Opin Genet Dev 14:316–323.
  • Veeramah KR, Tönjes A, Kovacs P, Gross A, Wegmann D, Geary P, Gasperikova D, et al. 2011. Genetic variation in the Sorbs of eastern Germany in the context of broader European genetic diversity. Eur J Hum Genet 19:995–1001.
  • Verginelli F, Donati F, Coia V, Boschi I, Palmirotta R, Battista P, Mariani Costantini R, Destro-Bisol G 2003. Variation of the hypervariable region-1 of mitochondrial DNA in central-eastern Italy. J Forensic Sci 48:443–444.

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