An evaluation of inter and intra population structure of Uttar Pradesh, inferred from 24 autosomal STRs

References

• Agrawal M, Mohapatra BK, Chauhan K, Dixit S, Kumawat RK, Sharma A, Dagar S, Srivastava A, Chaubey G, Shrivastava P. 2021. An evaluation of molecular characterization and population structure of Uttarakhand, India. Gene Reports. 23:101076.
   Google Scholar
• Balamurugan K, Kanthimathi S, Vijaya M, Suhasini G, Duncan G, Tracey M, Budowle B. 2010. Genetic variation of 15 autosomal microsatellite loci in a Tamil population from Tamil Nadu, Southern India. Leg Med. 12(6):320–323.
   PubMed Web of Science ®Google Scholar
• Banerjee J, Trivedi R, Kashyap VK. 2005. Polymorphism at 15 short tandem repeat AmpFℓSTR® IdentifilerTM loci in three aboriginal populations of India: an assessment in human identification. J Forensic Sci. 50(5):1–6.
   Web of Science ®Google Scholar
• Basu A, Sarkar-Roy N, Majumder PP. 2016. Genomic reconstruction of the history of extant populations of India reveals five distinct ancestral components and a complex structure. Proc Natl Acad Sci USA. 113(6):1594–1599.
   PubMed Web of Science ®Google Scholar
• Batham MS, Kushwaha KPS, Chauhan T, Kumawat RK, Shrivastava P. 2020. Autosomal STR allele frequencies in Kahars of Uttar Pradesh, India, drawn with PowerPlex® 21 multiplex system. Int J Legal Med. 134(2):517–519.
   PubMed Web of Science ®Google Scholar
• Butler JM. 2006. Genetics and genomics of core short tandem repeat loci used in human identity testing. J Forensic Sci. 51(2):253–265.
   PubMed Web of Science ®Google Scholar
• Census of India. 2011., Uttar Pradesh Profile Uttar Pradesh Profile 0–1. https://censusindia.gov.in/2011-prov-results/data_files/india/paper_contentsetc.pdf
   Google Scholar
• Dixit S, Shrivastava P, Kumawat RK, Kaitholia K, Dash HR, Sharma H, Choubey G. 2019. Forensic genetic analysis of population of Madhya Pradesh with PowerPlex Fusion 6CTM multiplex system. Int J Legal Med. 133(3):803–805.
   PubMed Web of Science ®Google Scholar
• Evanno G, Regnaut S, Goudet J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol. 14(8):2611–2620.
   PubMed Web of Science ®Google Scholar
• Excoffier L, Lischer HEL. 2010. Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol Ecol Resour. 10(3):564–567.
   PubMed Web of Science ®Google Scholar
• Gayden T, Mirabal S, Cadenas AM, Lacau H, Simms TM, Morlote D, Chennakrishnaiah S, Herrera RJ. 2009. Genetic insights into the origins of Tibeto-Burman populations in the Himalayas. J Hum Genet. 54(4):216–223.
   PubMed Web of Science ®Google Scholar
• Hammer Ø, Harper DAT, Ryan PD. 2001. PAST: paleontological statistics software package for education and data. Analysis Palaeontol Electronica. 4:1–9.
   Google Scholar
• Imam J, Reyaz R, Singh RS, Bapuly AK, Shrivastava P. 2018. Genomic portrait of population of Jharkhand, India, drawn with 15 autosomal STRs and 17 Y-STRs. Int J Legal Med. 132(1):139–140.
   PubMed Web of Science ®Google Scholar
• Kakkar S, Shrivastava P, Mandal SP, Preet K, Kumawat R, Chaubey G. 2020. The genomic ancestry of Jat Sikh population from Northwest India inferred from 15 autosomal STR markers using capillary electrophoresis. Ann Hum Biol. 47(5):483–489.
   PubMed Web of Science ®Google Scholar
• Kopf D, Varathan P. 2019. If Uttar Pradesh were a country. Quartz India. Retrieved 20 May 2019. https://qz.com/india/1094942/if-uttar-pradesh-were-a-country-where-would-it-rank-by-size-wealth-and-other-measures/
   Google Scholar
• Kraaijenbrink T, Van Der Gaag KJ, Zuniga SB, Xue Y, Carvalho-Silva DR, Tyler-Smith C, Jobling MA, Parkin EJ, Su B, Shi H, et al. 2014. A linguistically informed autosomal STR survey of human populations residing in the greater Himalayan region. PLoS One. 9(3):e91534.
   PubMedGoogle Scholar
• Kraaijenbrink T, van Driem GL, Tshering Of Gaselô K, de Knijff P. 2007. Allele frequency distribution for 21 autosomal STR loci in Bhutan. Forensic Sci Int. 170(1):68–72.
   PubMed Web of Science ®Google Scholar
• Kumawat RK, Shrivastava P, Shrivastava D, Mathur GK, Dash HR, Chaubey G. 2020a. Peopling of Rajasthan, India: evaluating the gene flow from east and west. Gene Reports. 22:100990.
   Google Scholar
• Kumawat RK, Shrivastava P, Shrivastava D, Mathur GK, Dixit S. 2020b. Genomic blueprint of population of Rajasthan based on autosomal STR markers. Ann Hum Biol. 47(1):70–75.
   PubMed Web of Science ®Google Scholar
• Kushwaha KPS, Chauhan T, Kumawat RK, Dixit S, Shrivastava P. 2021. Genetic variation of 20 autosomal STRs in Jats belonging to Delhi, India. Int J Legal Med. 135:771–773.
   PubMed Web of Science ®Google Scholar
• Liu J, Guo L, Qi R, Li S, Yin Yin J, Yang Zhang W, Sun Z, Tian X, Gao B. 2013. Allele frequencies of 19 autosomal STR loci in Manchu population of China with phylogenetic structure among worldwide populations. Gene. 529(2):282–287.
   PubMed Web of Science ®Google Scholar
• Mohapatra BK, Chauhan K, Shrivastava P, Dixit S, Kumawat RK, Sharma A, Dagar S, Chaubey G. 2020. A genomic exploration of 15 autosomal STR loci for establishment of a DNA profile database of the population of Himachal Pradesh. Leg Med. 46:101719.
   PubMedGoogle Scholar
• Noor S, Ali S, Eaaswarkhanth M, Haque I. 2009. Allele frequency distribution for 15 autosomal STR loci in Afridi Pathan population of Uttar Pradesh, India. Leg Med. 11(6):308–311.
   PubMedGoogle Scholar
• Ota M, Droma Y, Basnyat B, Katsuyama Y, Asamura H, Sakai H, Fukuhsima H. 2007. Allele frequencies for 15 STR loci in Tibetan populations from Nepal. Forensic Sci Int. 169(2–3):234–238.
   PubMed Web of Science ®Google Scholar
• Peakall ROD, Smouse PE. 2006. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Mol Ecol Notes. 6(1):288–295.
   Web of Science ®Google Scholar
• Perneger TV. 1998. What’s wrong with Bonferroni adjustments. BMJ. 316(7139):1236–1238.
   PubMed Web of Science ®Google Scholar
• Preet K, Malhotra S, Shrivastava P, Jain T, Rawat S, Varte LR, Singh S, Singh I, Sarkar S. 2016. Genetic Diversity in Gorkhas: an autosomal STR study. Sci Rep. 6:32494.
   PubMed Web of Science ®Google Scholar
• Sahoo S, Samal R, Behera S, Swain AK, Biswas S, Shrivastava P, Kumawat RK, Chaubey G, Dash HR. 2020. Genomic portrait of Odisha, India drawn by using 21 autosomal STR markers. Int J Legal Med. 134:1671–1673.
   PubMed Web of Science ®Google Scholar
• Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor (NY): Cold Spring Harbor Laboratory Press.
   Google Scholar
• Sharma G, Tamang R, Chaudhary R, Singh VK, Shah AM, Anugula S, Rani DS, Reddy AG, Eaaswarkhanth M, Chaubey G, et al. 2012. Genetic affinities of the central Indian tribal populations. PLoS One. 7(2):e32546.
   PubMedGoogle Scholar
• Shrivastava P, Jain T, Trivedi VB. 2017. Structure and genetic relationship of five populations from central India based on 15 autosomal STR loci. Ann Hum Biol. 44(1):74–86.
   PubMed Web of Science ®Google Scholar
• Shrivastava P, Jain T, Trivedi VB. 2015. Genetic polymorphism study at 15 autosomal locus in central Indian population. Springerplus. 4:566.
   PubMedGoogle Scholar
• Shrivastava P, Jain T, Trivedi VB. 2016. A genetic portrait of Oraon Indian tribe drawn with 15 autosomal and 17 Y chromosomal STR markers. Int J Legal Med. 130(5):1185–1186.
   PubMed Web of Science ®Google Scholar
• Singh SS, Chauhan T, Shrivastava P, Kumawat RK, Dixit S, Kushwaha KPS. 2020. Evaluation of genetic link of Tharu population with South and East Asian populations. Meta Gene. 25:100721.
   Google Scholar
• Sreekumar R, Thekkatavan A, Shrivastava P, Kumawat RK, Dixit S, Chaubey G. 2020. Allelic frequency database of 15 polymorphic autosomal STRs in the Malayalam-speaking population of Kerala, India. Int J Legal Med. 134(5):1679–1681.
   PubMed Web of Science ®Google Scholar
• Srivastava A, Kumawat R, Dixit S, Kaitholia K, Shrivastava D, Yadav VK, Nigam K, Sharma H, Trivedi VB, Chaubey G, et al. 2019. Genetic data for PowerPlex 21TM autosomal and PowerPlex 23 Y-STRTM loci from population of the state of Uttar Pradesh. India Int J Legal Med. 133(5):1381–1383.
   PubMed Web of Science ®Google Scholar
• Sultana GNN, Sharif MI, Asaduzzaman M, Chaubey G. 2015. Evaluating the genetic impact of South and Southeast Asia on the peopling of Bangladesh. Leg Med. 17(6):446–450.
   PubMedGoogle Scholar
• Tamang R, Thangaraj K. 2012. Genomic view on the peopling of India. Investig Genet. 3(1):20.
   PubMedGoogle Scholar
• Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. Mol Biol Evol. 30(12):2725–2729.
   PubMed Web of Science ®Google Scholar
• Tereba A. 1999. Tools for analysis of population statistics. Profiles DNA. 2:14–16.
   Google Scholar
• Tong D, Chen Y, Ou X, Chen W, Liu S, Zhang Y, Sun H. 2013. Polymorphism analysis and evaluation of 19 STR loci in the Han population of Southern China. Ann Hum Biol. 40(2):191–196.
   PubMed Web of Science ®Google Scholar
• Weir BS. 1990. Genetic data analysis: methods for discrete population genetic data. Sunderland (MA): Sinauer Associates, Inc. Publishers.
   Google Scholar