High prevalence and variable fitness of fluoroquinolone-resistant avian pathogenic Escherichia coli isolated from chickens in Korea

References

• Agunos, A., Leger, D. & Carson, C. (2012). Review of antimicrobial therapy of selected bacterial diseases in broiler chickens in Canada. The Canadian Veterinary Journal, 53, 1289–1300.
   PubMed Web of Science ®Google Scholar
• Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D.J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Research, 25, 3389–3402.
   PubMed Web of Science ®Google Scholar
• Bergeron, C.R., Prussing, C., Boerlin, P., Daignault, D., Dutil, L., Reid-Smith, R.J., Zhanel, G.G. & Manges, A.R. (2012). Chicken as reservoir for extraintestinal pathogenic Escherichia coli in humans, Canada. Emerging Infectious Diseases, 18, 415–421.
   PubMed Web of Science ®Google Scholar
• Bhatnagar, K. & Wong, A. (2019). The mutational landscape of quinolone resistance in Escherichia coli. PLoS One, 14, e0224650.
   PubMed Web of Science ®Google Scholar
• Chadfield, M.S., Brown, D.J., Aabo, S., Christensen, J.P. & Olsen, J.E. (2003). Comparison of intestinal invasion and macrophage response of Salmonella Gallinarum and other host-adapted Salmonella enterica serovars in the avian host. Veterinary Microbiology, 92, 49–64.
   PubMed Web of Science ®Google Scholar
• Cheng, A.C., Turnidge, J., Collignon, P., Looke, D., Barton, M. & Gottlieb, T. (2012). Control of fluoroquinolone resistance through successful regulation, Australia. Emerging Infectious Diseases, 18, 1453–1460.
   PubMed Web of Science ®Google Scholar
• Ciesielczuk, H., Hornsey, M., Choi, V., Woodford, N. & Wareham, D.W. (2013). Development and evaluation of a multiplex PCR for eight plasmid-mediated quinolone-resistance determinants. Journal of Medical Microbiology, 62, 1823–1827.
   PubMed Web of Science ®Google Scholar
• CLSI (Clinical and Laboratory Standards Institute). (2015). Performance standards for antimicrobial disk and dilution susceptibility tests for bacteria isolated from animals. 3rd ed. CLSI supplement VET01S. In. Wayne, PA: CLSI.
   Google Scholar
• CLSI (Clinical and Laboratory Standards Institute). (2016). Performance standards for antimicrobial susceptibility testing, 26th ed. Approved standard, CLSI publication M100-S26. In. Wayne, PA: CLSI.
   Google Scholar
• Coffey, B.M. & Anderson, G.G. (2014). Biofilm formation in the 96-well microtiter plate. Methods in Molecular Biology, 1149, 631–641.
   PubMedGoogle Scholar
• Cummins, M.L., Reid, C.J., Chowdhury, P.R., Bushell, R.N., Esbert, N., Tivendale, K.A., Noormohammadi, A.H., Islam, S., Marenda, M.S., Browning, G.F., Markham, P.F. & Djordjevic, S.P. (2019). Whole genome sequence analysis of Australian avian pathogenic Escherichia coli that carry the class 1 integrase gene. Microbial Genomics, 5, e000250.
   PubMed Web of Science ®Google Scholar
• Davies, R.D. & Wales, A. (2019). Antimicrobial resistance on farms: a review including biosecurity and the potential role of disinfectants in resistance selection. Comprehensive Reviews in Food Science and Food Safety, 18, 753–774.
   PubMed Web of Science ®Google Scholar
• Doumith, M., Day, M.J., Hope, R., Wain, J. & Woodford, N. (2012). Improved multiplex PCR strategy for rapid assignment of the four major Escherichia coli phylogenetic groups. Journal of Clinical Microbiology, 50, 3108–3110.
   PubMed Web of Science ®Google Scholar
• Dziva, F. & Stevens, M.P. (2008). Colibacillosis in poultry: unravelling the molecular basis of virulence of avian pathogenic Escherichia coli in their natural hosts. Avian Pathology, 37, 355–366.
   PubMed Web of Science ®Google Scholar
• Everett, M.J., Jin, Y.F., Ricci, V. & Piddock, L.J. (1996). Contributions of individual mechanisms to fluoroquinolone resistance in 36 Escherichia coli strains isolated from humans and animals. Antimicrobial Agents and Chemotherapy, 40, 2380–2386.
   PubMed Web of Science ®Google Scholar
• Ewers, C., Antao, E.M., Diehl, I., Philipp, H.C. & Wieler, L.H. (2009). Intestine and environment of the chicken as reservoirs for extraintestinal pathogenic Escherichia coli strains with zoonotic potential. Applied and Environmental Microbiology, 75, 184–192.
   PubMed Web of Science ®Google Scholar
• Ewing, W.H. (1986). Edwards and Ewing's identification of Enterobacteriaceae. New York, N.Y.: Elsevier Science Publishing Co. Inc.
   Google Scholar
• Griggs, D.J., Johnson, M.M., Frost, J.A., Humphrey, T., Jorgensen, F. & Piddock, L.J. (2005). Incidence and mechanism of ciprofloxacin resistance in Campylobacter spp. isolated from commercial poultry flocks in the United Kingdom before, during, and after fluoroquinolone treatment. Antimicrobial Agents and Chemotherapy, 49, 699–707.
   PubMed Web of Science ®Google Scholar
• Jeong, Y.W., Kim, T.E., Kim, J.H. & Kwon, H.J. (2012). Pathotyping avian pathogenic Escherichia coli strains in Korea. Journal of Veterinary Science, 13, 145–152.
   PubMed Web of Science ®Google Scholar
• Johnson, T.J., Wannemuehler, Y., Doetkott, C., Johnson, S.J., Rosenberger, S.C. & Nolan, L.K. (2008). Identification of minimal predictors of avian pathogenic Escherichia coli virulence for use as a rapid diagnostic tool. Journal of Clinical Microbiology, 46, 3987–3996.
   PubMed Web of Science ®Google Scholar
• Kim, T.E., Jeong, Y.W., Cho, S.H., Kim, S.J. & Kwon, H.J. (2007). Chronological study of antibiotic resistances and their relevant genes in Korean avian pathogenic Escherichia coli isolates. Journal of Clinical Microbiology, 45, 3309–3315.
   PubMed Web of Science ®Google Scholar
• Literak, I., Reitschmied, T., Bujnakova, D., Dolejska, M., Cizek, A., Bardon, J., Pokludova, L., Alexa, P., Halova, D. & Jamborova, I. (2013). Broilers as a source of quinolone-resistant and extraintestinal pathogenic Escherichia coli in the Czech Republic. Microbial Drug Resistance, 19, 57–63.
   PubMed Web of Science ®Google Scholar
• Luo, N., Pereira, S., Sahin, O., Lin, J., Huang, S., Michel, L. & Zhang, Q. (2005). Enhanced in vivo fitness of fluoroquinolone-resistant Campylobacter jejuni in the absence of antibiotic selection pressure. Proceedings of the National Academy of Sciences, 102, 541–546.
   PubMed Web of Science ®Google Scholar
• Lutful Kabir, S.M. (2010). Avian colibacillosis and salmonellosis: a closer look at epidemiology, pathogenesis, diagnosis, control and public health concerns. International Journal of Environmental Research and Public Health, 7, 89–114.
   PubMed Web of Science ®Google Scholar
• Marcusson, L.L., Frimodt-Moller, N. & Hughes, D. (2009). Interplay in the selection of fluoroquinolone resistance and bacterial fitness. PLoS Pathogens, 5, e1000541.
   PubMed Web of Science ®Google Scholar
• Matsui, Y., Hu, Y., Rubin, J., de Assis, R.S., Suh, J. & Riley, L.W. (2020). Multilocus sequence typing of Escherichia coli isolates from urinary tract infection patients and from fecal samples of healthy subjects in a college community. MicrobiologyOpen, 9, e1032.
   Web of Science ®Google Scholar
• Melnyk, A.H., Wong, A. & Kassen, R. (2015). The fitness costs of antibiotic resistance mutations. Evolutionary Applications, 8, 273–283.
   PubMed Web of Science ®Google Scholar
• Miskinyte, M. & Gordo, I. (2013). Increased survival of antibiotic-resistant Escherichia coli inside macrophages. Antimicrobial Agents and Chemotherapy, 57, 189–195.
   PubMed Web of Science ®Google Scholar
• Nesse, L.L., Osland, A.M., Mo, S.S., Sekse, C., Slettemeas, J.S., Bruvoll, A.E.E., Urdahl, A.M. & Vestby, L.K. (2020). Biofilm forming properties of quinolone resistant Escherichia coli from the broiler production chain and their dynamics in mixed biofilms. BMC Microbiology, 20, 46.
   PubMed Web of Science ®Google Scholar
• Nhung, N.T., Chansiripornchai, N. & Carrique-Mas, J.J. (2017). Antimicrobial resistance in bacterial poultry pathogens: a review. Frontiers in Veterinary Science, 4, 126.
   PubMed Web of Science ®Google Scholar
• Nishikawa, R., Murase, T. & Ozaki, H. (2019). Plasmid-mediated quinolone resistance in Escherichia coli isolates from commercial broiler chickens and selection of fluoroquinolone-resistant mutants. Poultry Science, 98, 5900–5907.
   PubMed Web of Science ®Google Scholar
• Oliveira, M., Dias, F.R. & Pomba, C. (2014). Biofilm and fluoroquinolone resistance of canine Escherichia coli uropathogenic isolates. BMC Research Notes, 7, 499.
   PubMedGoogle Scholar
• Olkkola, S., Nykasenoja, S., Raulo, S., Llarena, A.K., Kovanen, S., Kivisto, R., Myllyniemi, A.L. & Hanninen, M.L. (2016). Antimicrobial resistance and multilocus sequence types of Finnish Campylobacter jejuni isolates from multiple sources. Zoonoses and Public Health, 63, 10–19.
   PubMed Web of Science ®Google Scholar
• Redgrave, L.S., Sutton, S.B., Webber, M.A. & Piddock, L.J. (2014). Fluoroquinolone resistance: mechanisms, impact on bacteria, and role in evolutionary success. Trends in Microbiology, 22, 438–445.
   PubMed Web of Science ®Google Scholar
• Riley, L.W. (2014). Pandemic lineages of extraintestinal pathogenic Escherichia coli. Clinical Microbiology and Infection, 20, 380–390.
   PubMed Web of Science ®Google Scholar
• Rodriguez-Martinez, J.M., Machuca, J., Cano, M.E., Calvo, J., Martinez-Martinez, L. & Pascual, A. (2016). Plasmid-mediated quinolone resistance: two decades on. Drug Resistance Updates, 29, 13–29.
   PubMed Web of Science ®Google Scholar
• Sarowska, J., Futoma-Koloch, B., Jama-Kmiecik, A., Frej-Madrzak, M., Ksiazczyk, M., Bugla-Ploskonska, G. & Choroszy-Krol, I. (2019). Virulence factors, prevalence and potential transmission of extraintestinal pathogenic Escherichia coli isolated from different sources: recent reports. Gut Pathogens, 11, 10.
   PubMed Web of Science ®Google Scholar
• Vincent, C., Boerlin, P., Daignault, D., Dozois, C.M., Dutil, L., Galanakis, C., Reid-Smith R.J., Tellier, P.P., Tellis, P.A., Ziebell, K. & Manges, A.R. (2010). Food reservoir for Escherichia coli causing urinary tract infections. Emerging Infectious Diseases, 16, 88–95.
   PubMed Web of Science ®Google Scholar
• Wirth, T., Falush, D., Lan, R., Colles, F., Mensa, P., Wieler, L.H., Karch, H., Reeves, P.R., Maiden, M.C., Ochman, H. & Achtman, M. (2006). Sex and virulence in Escherichia coli: an evolutionary perspective. Molecular microbiology, 60(5), 1136–1151.
   PubMed Web of Science ®Google Scholar
• Zhuge, X., Sun, Y., Jiang, M., Wang, J., Tang, F., Xue, F., Ren, J., Zhu, W. & Dai, J. (2019). Acetate metabolic requirement of avian pathogenic Escherichia coli promotes its intracellular proliferation within macrophage. Veterinary Research, 50, 31.
   PubMed Web of Science ®Google Scholar