Characterization of microbial consortia that reductively dechlorinate 4-chlorophenol and transform phenol to benzoate enriched from estuarine sediment of Lake Shinji

References

• Barbara , R. , Genthner , S. and Price , W. A. II . 1989 . Anaerobic degradation of chloroaromatic compounds in aquatic sediments under a variety of enrichment conditions . Appl. Environ. Microbiol. , 55 : 1466 – 1471 .
   PubMed Web of Science ®Google Scholar
• Mohn , W. W. and Tiedje , J. M. 1992 . Microbial reductive dehalogenation . Microbiol. Rev. , 56 : 482 – 507 .
   PubMedGoogle Scholar
• Holliger , C. and Schraa , G. 1994 . Physiological meaning and potential for application of reductive dechlorination by anaerobic bacteria . FEMS Microbiol. Rev. , 15 : 297 – 305 .
   PubMed Web of Science ®Google Scholar
• Smidt , H. and de Vos , W. M. 2004 . Anaerobic microbial dehalogenation . Annu. Rev. Microbiol. , 58 : 43 – 73 .
   PubMed Web of Science ®Google Scholar
• Carmona , M. , Zamarro , M. T. , Blázquez , B. , D-Rodríguez , G. , Juárez , J. F. , Valderrama , J. A. , Barragán , M. J.L. , García , J. L. and Díaz , E. 2009 . Anaerobic catabolism of aromatic compounds: a genetic and genomic view . Microbiol. Mol. Biol. Rev. , 73 : 71 – 133 .
   PubMed Web of Science ®Google Scholar
• Boyd , A. S. , Shelton , D. R. , Berry , D. and Tiedje , J. M. 1983 . Anaerobic biodegradation of phenolic compounds in digested sludge . Appl. Environ. Microbiol. , 46 : 50 – 54 .
   PubMed Web of Science ®Google Scholar
• Genthner , B. R.S. , Price , W. A. II and Pritchard , P. H. 1989 . Characterization of anaerobic dechlorinating consortia derived from aquatic sediments . Appl. Environ. Microbiol. , 55 : 1466 – 1471 .
   PubMed Web of Science ®Google Scholar
• Basu , S. K. , Oleszkiewicz , J. A. and Sparling , R. 1996 . Dehalogenation of 2-chlorophenol (2-CP) in anaerobic batch cultures . Wat. Res. , 30 : 315 – 322 .
   Web of Science ®Google Scholar
• Becker , G. J. , Stahl , D. A. and Rittmann , B. E. 1999 . Reductive dehalogenation and conversion of 2-chlorophenol to 3-chlorobenzoate in a methanogenic sediment community: implication for predicting the environmental fate of chlorinated pollutants . Appl. Environ. Microbiol. , 67 : 5705 – 5714 .
   Web of Science ®Google Scholar
• Sanford , R. A. and Tiedje , J. M. 1997 . Chlorophenol dechlorination and subsequent degradation in denitrifying microcosms fed low concentrations of nitrate . Biodegradation , 7 : 425 – 434 .
   Web of Science ®Google Scholar
• Häggblom , M. M. 1998 . Reductive dechlorination of halogenated phenols by a sulfate-reducing consortium . FEMS Microbiol. Ecol. , 26 : 35 – 41 .
   Web of Science ®Google Scholar
• Kohring , G.-W. , Zhang , X. and Wiegel , J. 1989 . Anaerobic dechlorination of 2,4-dichlorophenol in freshwater sediments in the presence of sulfate . Appl. Environ. Microbiol. , 55 : 2735 – 2737 .
   PubMed Web of Science ®Google Scholar
• Liu , S.-M. , Kuo , C.-E. and Hsu , T.-B. 1996 . Reductive dechlorination of chlorophenols and pentachlorophenol in anoxic estuarine sediments . Chemosphere , 32 : 1287 – 1300 .
   Web of Science ®Google Scholar
• Itoh , K. , Mihara , Y. , Tanimoto , N. , Shimada , T. and Suyama , K. 2010 . Reductive dechlorination of chlorophenols in estuarine sediments of Lake Shinji and Lake Nakaumi . J. Environ. Sci. Health, Part B, , 45 : 399 – 407 .
   PubMed Web of Science ®Google Scholar
• Shelton , D. R. and Tiedje , J. M. 1984 . Isolation and partial characterization of bacteria in an anaerobic consortium that mineralizes 3-chlorobenzoic acid . Appl. Environ. Microbiol. , 48 : 840 – 848 .
   PubMed Web of Science ®Google Scholar
• Sun , B. , Cole , J. R. , Sanford , R. A. and Tiedje , J. M. 2000 . Isolation and characterization of Desulfovibrio dechloracetivorans sp . nov., a marine dechlorinating bacterium growing by coupling the oxidation of acetate to the reductive dechlorination of 2-chlorophenol. Appl. Environ. Microbiol. , 66 : 2408 – 2413 .
   Google Scholar
• Sanford , R. A. , Cole , J. R. and Tiedje , J. M. 2002 . Characterization and description of Anaeromyxobacter dehalogenans gen . nov., sp. nov., an aryl-halorespiring facultative anaerobic myxobacterium. Appl. Environ. Microbiol. , 68 : 893 – 900 .
   PubMed Web of Science ®Google Scholar
• Gerritse , J. , Renard , V. , Gomes , T.M.P. , Lawson , P. A. , Collons , M. D. and Gottschal , J. C. 1996 . Desulfitobacterium sp. strain PCE1, an anaerobic bacterium that can grow by reductive dechlorination of tetrachloroethene or ortho-chlorinated phenols. . Arch. Microbiol. , 165 : 132 – 140 .
   PubMed Web of Science ®Google Scholar
• Bouchard , B. , Beaudet , R. , Villemur , R. , McSween , G. , Lepine , F. and Bisaillon , J.-G. 1996 . Isolation and characterization of Desulfitobacterium frappieri sp. nov., an anaerobic bacterium which reductively dechlorinates pentachlorophenol to 3-chlorophenol. . Int. J. Syst. Bacteriol. , 46 : 1010 – 1015 .
   PubMedGoogle Scholar
• Breitenstein , A. , Saano , A. , Salkinoja-Salone , M. , Andreesen , J. R. and Lechner , U. 2001 . Analysis of a 2,4,6-trichlorophenol-dehalogenating enrichment culture and isolation of the dehalogenating member Desulfitobacterium frappieri strain TCP-A . Arch. Microbiol. , 175 : 133 – 142 .
   PubMed Web of Science ®Google Scholar
• Cole , J. R. , Cascarelli , A. L. , Mohn , W. W. and Tiedje , J. M. 1994 . Isolation and characterization of a novel bacterium growing via reductive dehalogenation of 2-chlorophenol . Appl. Environ. Microbiol. , 60 : 3536 – 3542 .
   PubMed Web of Science ®Google Scholar
• Utkin , I. , Dalton , D. D. and Wiegwl , J. 1995 . Specificity of reductive dehalogenation of substituted ortho-chlorophenols by Desulfitobacterium dehalogenans JW/IU-DC1 . Appl. Environ. Microbiol. , 64 : 346 – 351 .
   Google Scholar
• Madsen , T. and Licht , D. 1992 . Isolation and characterization of an anaerobic chlorophenol-transforming bacterium . Appl. Environ. Microbiol. , 58 : 2874 – 2878 .
   PubMed Web of Science ®Google Scholar
• Fantroussi , S. E. , Naveau , H. and Agathos , S. N. 1998 . Anaerobic dechlorinaing bacteria . Biotechnol. Prog. , 14 : 167 – 188 .
   PubMed Web of Science ®Google Scholar
• Juteau , P. , Côté , V. , Duckett , M.-F. , Beaudet , R. , Lépine , F. , Villemur , R. and Bisaillon , J.-G. 2005 . Cryptanaerobacter phenolicus gen., nov., sp. nov., an anaerobe that transforms phenol into benzoate via 4-hydroxybenzoate . Int J Syst Evol Microbiol. , 55 : 245 – 250 .
   PubMed Web of Science ®Google Scholar
• Qiu , Y.-L. , Hanada , S. , Ohashi , A. , Harada , H. , Kamagata , Y. and Sekiguchi , Y. 2008 . Syntrophorhabdus aromaticivorans gen., nov., sp. nov., the first cultured anaerobe capable of degrading phenol to acetate in obligate syntrophic associations with a hydrogenotrophic methanogen . Appl. Environ. Microbiol. , 74 : 2051 – 2058 .
   PubMed Web of Science ®Google Scholar
• Yan , T. , LaPara , T. M. and Novak , P. J. 2006 . The reductive dechlorination of 2,3,4,5-tetrachlorobiphenyl in three different sediment cultures: evidence for the involvement of phylogenetically similar Dehalococcoides-like bacterial populations . FEMS Microbiol. Ecol. , 55 : 248 – 261 .
   PubMed Web of Science ®Google Scholar
• Yoshida , N. , Yoshida , Y. , Handa , Y. , Kim , H. K. , Ichihara , S. and Katayama , A. 2007 . Polyphasic characterization of a PCP-to-phenol dechlorinating microbial community enriched from paddy soil . Sci. Total Environ. , 381 : 233 – 242 .
   PubMed Web of Science ®Google Scholar
• Rahm , B. G. , Chauhan , S. , Holmes , V. F. , Macbeth , T. W. and Sorenson , K. S. Jr. 2006 . Alvarez-Cohen, L.; Molecular characterization of microbial populations at two sites with differing reductive dechlorination abilities . Biodegradation , 17 : 523 – 534 .
   PubMed Web of Science ®Google Scholar
• Fantroussi , S. E. , Ntibahezwa , E. , Thomas , S. , Naveau , H. and Agathos , S. N. 1998 . Effect of Specific Inhibitors on the Anaerobic Reductive Dechlorination of 2,4,6-Trichlorophenol by a Stable Methanogenic Consortium . Anaerobe. , 4 : 197 – 203 .
   PubMed Web of Science ®Google Scholar
• Lane , D. J. , Pace , B. , Olsen , G. J. , Stahl , D. A. , Sogin , M. L. and Pace , N. R. 1986 . Rapid determination of 16S ribosomal RNA sequence for phylogenetic analyses . Proc. Natl. Acad. Sci. USA. , 82 : 6955 – 6959 .
   Google Scholar
• Huong , N. L. , Itoh , K. and Suyama , K. 2008 . 2,4-dichlorophenoxyacetic acid (2,4-D)- and 2,4,5-trichlorophenoxyacetic acid (2,4,5-T)-degrading bacterial community in soil-water suspension during the enrichment process . Microbes Environ. , 23 : 142 – 148 .
   Google Scholar
• Roest , K. , Heilig , H. G. , Smidt , H. , de Vos , W. M. , Stams , A. J. and Akkermans , A. D. 2005 . Community analysis of a full-scale anaerobic bioreactor treating paper mill wastewater . Syst. Appl. Microbiol. , 28 : 175 – 185 .
   PubMed Web of Science ®Google Scholar
• Backhed , F. , Ding , H. , Wang , T. , Hooper , L. V. , Koh , G. Y. , Nagy , A. , Semenkovich , C. F. and Gordon , J. I. 2004 . The gut microbiota as an environmental factor that regulates fat storage . Proc. Natl. Acad. Sci. USA. , 101 : 15718 – 15723 .
   PubMed Web of Science ®Google Scholar
• Riviere , D. , Desvignes , V. , Pelletier , E. , Chaussonnerie , S. , Guermazi , S. , Weissenbach , J. , Li , T. , Camacho , P. and Sghir , A. 2009 . Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge . ISME J. , 3 : 700 – 714 .
   PubMed Web of Science ®Google Scholar
• Lowe , M. , Madsen , E. L. , Schindler , K. , Smith , C. , Emrich , S. , Robb , F. and Halden , R. U. 2002 . Geochemistry and microbial diversity of a trichloroethene-contaminated Superfund site undergoing intrinsic in situ reductive dechlorination . FEMS Microbiol. Ecol. , 40 : 123 – 134 .
   PubMed Web of Science ®Google Scholar
• Wild , A. , Hermann , R. and Leisinger , T. 1996 . Isolation of an anaerobic bacterium which reductively dechlorinates tetrachloroethene and trichloroethene . Biodegradation , 7 : 507 – 511 .
   PubMed Web of Science ®Google Scholar
• Sun , B. , Griffin , B. M. , Ayala del-Rio , H. L. , Hashsham , S. A. and Tiedje , J. M. 2002 . Microbial dehalorespiration with 1,1,1-trichloroethane . Science , 298 : 1023 – 1025 .
   PubMedGoogle Scholar
• Holliger , C. , Hahn , D. , Harmsen , H. , Ludwig , W. , Schumacher , W. , Tindall , B. , Vazquez , F. , Weiss , N. and Zehnder , A. J. 1998 . Dehalobacter restrictus gen . nov. and sp. nov., a strictly anaerobic bacterium that reductively dechlorinates tetra- and trichloroethene in an anaerobic respiration. Arch. Microbiol. , 169 : 313 – 321 .
   Google Scholar
• Grostern , A. and Edwards , E. A. 2006 . A 1,1,1-trichloroethane-degrading anaerobic mixed microbial culture enhances biotransformation of mixtures of chlorinated ethenes and ethanes . Appl. Environ. Microbiol. , 72 : 7849 – 7856 .
   PubMed Web of Science ®Google Scholar
• Grostern , A. and Edwards , E. A. 2006 . Growth of Dehalobacter and Dehalococcoides spp . during degradation of chlorinated ethanes. Appl. Environ. Microbiol. , 72 : 428 – 436 .
   PubMed Web of Science ®Google Scholar
• van Doesburg , W. , van Eekert , M. H. , Middeldorp , P. J. , Balk , M. , Schraa , G. and Stams , A. J. 2005 . Reductive dechlorination of beta-hexachlorocyclohexane (beta-HCH) by a Dehalobacter species in coculture with a Sedimentibacter sp . FEMS Microbiol. Ecol. , 54 : 87 – 95 .
   PubMed Web of Science ®Google Scholar
• Hansel , C. M. , Fendorf , S. , Jardine , P. M. and Francis , C. A. 2008 . Changes in bacterial and archaeal community structure and functional diversity along a geochemically variable soil profile . Appl. Environ. Microbiol. , 74 : 1620 – 1633 .
   PubMed Web of Science ®Google Scholar
• Knoll , G. and Winter , J. 1989 . Degradation of phenol via carboxylation to benzoate by a defined, obligate syntrophic consortium of anaerobic bacteria . Appl. Microbiol. Biotechnol. , 30 : 318 – 324 .
   Google Scholar
• Karlsson , A. , Ejlertsson , J. and Svensson , B. H. 2000 . CO2-dependent fermentation of phenol to acetate, butyrate and benzoate by an anaerobic, pasteurised culture . Arch. Microbiol. , 173 : 398 – 402 .
   Google Scholar